BAC Information

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BAC

Clone NameB6Ng01-044H17
Chromosome2 (Build37)
Map Location 39,538,214 - 39,539,024
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044H17.bB6Ng01-044H17.g
ACCDH870220DH870221
length4881,022
definitionDH870220|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H17, 5' end.DH870221|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccagtgactgccccaattggggcataaaca
accaccaaacccagacactaggcagatgccaacaagagactgctgacagg
agcctgctatagctgtctcctgcgaggctctgccagtgcctggcaaatac
agaagtggatgatcacagtcatccattgtacagagcacaaggtccccagt
gtaggagccagagaaatacccagggagctgaaggagtttgaagccccata
aaaggaacgttaatatgaactaaccagtaaccccagagctccttggaact
ataccactaatcaaagaaaacacatgttggaacttgtggctctaactata
tatgtagaagaggatggcctagttggtcattgatgggaagagaggccgtt
ggtcctgtgcaggctttatgccccagtgtgagtgaatgccaggaccagga
atcggagtgggtgggttggggaacagggggagtgggga
gaattcccatcttagcctctttgaataatggatttataatcagcatgtgt
agcaaataaatccatttgtccacatgtttattttggccataattttaatc
acagcaataagaaaggaaacaaaaacaactattaataggagcttgactct
cagatatatactcatctttcagctattgtgacaattaaaatagaattgtt
tttcttctttcaggtttcaataatttctgatgtaggtaaaccatttcgag
tgctgtgtgtctttctgaatggcccatattttaatatctaccagaaaaat
tttgggttaagaaagagaacatggaatgcttgtcctttggggtcaagata
gcatcacttggtatattttctagttccatcaatttgtcagcaaaatttca
ttttttttactagaatgtattcagtccattgtaggtatgtgcttcatttt
attatgcattagtcagttgtaggacattacttgtttccattttctagcaa
ttgtgaatagagcaataatgagtatggctgagaaattatctgtagagtag
gatgtcaagtaatttgggcatatgccaaggagtggcatagctgggtcata
tggtagagttatatgcagctttataaagattcaccccaatgatttctata
acggctactagtctgcaacctcatggatcttgaatgaattttccctgttg
tggatgggtctggtgctgtttgtattttgatgctagttctgctctccttt
gaggggctgtggacaaggagtgagtcacacattctcaggtgacttctttg
tgaaccaatcccctaattaataaagggagccaatcactgggcgagtagaa
gggacttcccagttggatggaggcagagaggaagcatgagagagttagtt
ccttttgaagggggatagagtgaggacagatgtaattactagtttctccc
agtttcatggcagatccatcaggactcaccactggaggatttagtttaac
aagctttacaagattaggattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_39538214_39539024
seq2: B6Ng01-044H17.g_66_878

seq1  GAATTCCCATCTTAGCCTCTTTGAATAATGGATTTATAATCAGCATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCTTAGCCTCTTTGAATAATGGATTTATAATCAGCATGTGT  50

seq1  AGCAAATAAATCCATTTGTCCACATGTTTATTTTGGCCATAATTTTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATAAATCCATTTGTCCACATGTTTATTTTGGCCATAATTTTAATC  100

seq1  ACAGCAATAAGAAAGGAAACAAAAACAACTATTAATAGGAGCTTGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATAAGAAAGGAAACAAAAACAACTATTAATAGGAGCTTGACTCT  150

seq1  CAGATATATACTCATCTTTCAGCTATTGTGACAATTAAAATAGAATTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATACTCATCTTTCAGCTATTGTGACAATTAAAATAGAATTGTT  200

seq1  TTTCTTCTTTCAGGTTTCAATAATTTCTGATGTAGGTAAACCATTTCGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTTCAGGTTTCAATAATTTCTGATGTAGGTAAACCATTTCGAG  250

seq1  TGCTGTGTGTCTTTCTGAATGGCCCATATTTTAATATCTACCAGAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGTCTTTCTGAATGGCCCATATTTTAATATCTACCAGAAAAAT  300

seq1  TTTGGGTTAAGAAAGAGAACATGGAATGCTTGTCCTTTGGGGTCAAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTAAGAAAGAGAACATGGAATGCTTGTCCTTTGGGGTCAAGATA  350

seq1  GCATCACTTGGTATATTTTCTAGTTCCATCAATTTGTCAGCAAAATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACTTGGTATATTTTCTAGTTCCATCAATTTGTCAGCAAAATTTCA  400

seq1  TTTTTTTTACTAGAATGTATTCAGTCCATTGTAGGTATGTGCTTCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTACTAGAATGTATTCAGTCCATTGTAGGTATGTGCTTCATTTT  450

seq1  ATTATGCATTAGTCAGTTGTAGGACATTACTTGTTTCCATTTTCTAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCATTAGTCAGTTGTAGGACATTACTTGTTTCCATTTTCTAGCAA  500

seq1  TTGTGAATAGAGCAATAATGAGTATGGCTGAGAAATTATCTGTAGAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATAGAGCAATAATGAGTATGGCTGAGAAATTATCTGTAGAGTAG  550

seq1  GATGTCAAGTAATTTGGGCATATGCCAAGGAGTGGCATAGCTGGGTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAAGTAATTTGGGCATATGCCAAGGAGTGGCATAGCTGGGTCATA  600

seq1  TGGTAGAGTTATATGCAGCTTTATAAAGATTCACCCCAATGATTTCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAGTTATATGCAGCTTTATAAAGATTCACCCCAATGATTTCTATA  650

seq1  ACGGCTACTAGTCTGCAACCTCATGGATCTTGAATGAA-TTTCCCTGTTG  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACGGCTACTAGTCTGCAACCTCATGGATCTTGAATGAATTTTCCCTGTTG  700

seq1  TGGATGGGTCTGGTGCTGTTTGTATTTTGATGCTAGTTCTGCTCTCCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGTCTGGTGCTGTTTGTATTTTGATGCTAGTTCTGCTCTCCTTT  750

seq1  GAGGGGCTGTGGACAAGGAGTGAGTCACACATTCTCAGGTGACTTC-TTG  798
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGGGGCTGTGGACAAGGAGTGAGTCACACATTCTCAGGTGACTTCTTTG  800

seq1  TGAACCAATCCCC  811
      |||||||||||||
seq2  TGAACCAATCCCC  813