BAC Information

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BAC

Clone NameB6Ng01-044I06
Chromosome2 (Build37)
Map Location 78,117,061 - 78,118,205
singlet/doubletsinglet
Overlap geneOTTMUSG00000016703
Upstream geneLOC623706, LOC667906, Zfp533, BC003993, LOC667920
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I06.bB6Ng01-044I06.g
ACCDH870246DH870247
length1,1901,244
definitionDH870246|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I06, 5' end.DH870247|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattagaccttagctgggggattcttcttctcctttataagatg
tttatcttctggggtcactgcatgatgtccacttggtatcttggcaagtt
tgacaagaacgaaggaggatttcctcaaaagcctgctacactgaggccca
taggtcaaaggctgagctcacatactttgtcttttccacatgattacatg
tatattttagtgtggtctcttcagcgtggctgtaagtgtctcacaaggag
acttggaactagaataggccaaagcagaagctgccatctttgtaaaagta
agaaagaggatggaataccatctctttcactgtacagatgggtcaagata
gtgataggctagtctaggttcaaagggatggtaagtatattttatgtgtt
gattaaaaaatattcaaaacttatttaaatataatatgtactttttgtat
acatgtaatattataatgtatatattacaatatatacattatatatgtac
aatgtacatataatgcatatataatataatttgtataaataaattaagta
gattaaatagattatagttcactggtatgcaaaaccaagagtcttctaca
caaatacatattggaaacactaaaattattaatatatatataaaacagtc
aattaacaatatgtatagagttattgcttcttcatgcagtaccattgaca
gaatactaccaattgataagtcaaacttaaacaggtttgtttcctacaaa
catttgatgtacagatcaggtaattagcctatgccttgtcctttagcctt
tatgtgaattgtgctcattaactttctgcttaataggcatgtcctgagct
tttaacaaatcctagcctatacctttgttggttgctgtgaatgcgcatac
caggcacgaggtgcaatgtaccgttggcttgacggcacatcagagacgca
tcctgcctctcttacttctgttgagcttatctgtgttggcacctgcctga
tggcaaatgcggtgacatgtaagacacctgctggcattgatttggcgttg
cagtcagaggagccagagagattacttttcagcattttgtgccagggctg
ttgatctatcggatcctcaccagggagctcatacaagatgcagttgttta
ggcaggcatctggagctgttctgcctgaagagtattatgt
gaattctctgagtgtctatggcatgttacaagaaggcatacttatgccta
ggtgaaatggaaggagccacatactggcacatggcatggtcctgatcaga
tattcaatatgggaaagagagcatgtttgtgttcttttcccaggatgctg
aaggagcatgctagctgccagggtgtgacatgctgatgctaagacaaaga
atgatactgactgtgagctttcagagtgccaacggtgactgggaagctgt
ttttgacccacctttgcttgcctatatcccagattggtcaagctgccttg
cttcaagcttttagaccttgtgggacagagaacatggagactgccttcaa
aaacttgatcaaaaagagaagttatgatgactcttctcttttgtttgatg
tgaccatttattctgcctcaatcatagactggtctataaatcaatccaat
atttggaaataacagtcttcatttggaaggctgggtctggacagttttag
agacatttgaaagttagctacagttctctatgatgatgtattagcaatag
ataaaaattgggacagattctagatttcaaacaaatgttcatgcatgtgt
taaggctccaaatctgttattgattggtcatgttaaaattactttttctt
ccatagcatttaatgttgtatttaagttgtattgattgtactctttccaa
ttgtgttaaggcattgaaacctgtcatgtctgttatggtggtctatcaac
cagctttgttttattgcctgtgagtattacaggaccttagtattatgaaa
gaagcttgcagggactgggagaagagacttcaggaactcttcaataatta
tgtggagcacctggaatggaattctgtgctaccttctccccttccttgac
ccagtccttggcttacgaattctactatcgctaggacttttctttttaat
agaattatggccttcacttggggaccatagatgcaattaaggcccaacct
ttgcagattcattacatcatctggcatgtcagatctgggaaaatggtttg
atgaacttcttacaaatggcccttaaaataccaactcaacttggaccttc
agcttacagtgcgaaggactggttgccagtgatgggcactggagagagga
tccgcctagattgataggcaccttagacaggactccctagtgatggatcc
ctatatagggtaaactacactcgcatgatgatgagtcctgtcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78117061_78118205
seq2: B6Ng01-044I06.b_97_1235

seq1  TTATCTTCTGGGGTCACTGCATGATGTCCACTTGGTATCTTGGCAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCTGGGGTCACTGCATGATGTCCACTTGGTATCTTGGCAAGTTT  50

seq1  GACAAGAACGAAGGAGGATTTCCTCAAAAGCCTGCTACACTGAGGCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAACGAAGGAGGATTTCCTCAAAAGCCTGCTACACTGAGGCCCAT  100

seq1  AGGTCAAAGGCTGAGCTCACATACTTTGTCTTTTCCACATGATTACATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAGGCTGAGCTCACATACTTTGTCTTTTCCACATGATTACATGT  150

seq1  ATATTTTAGTGTGGTCTCTTCAGCGTGGCTGTAAGTGTCTCACAAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGTGTGGTCTCTTCAGCGTGGCTGTAAGTGTCTCACAAGGAGA  200

seq1  CTTGGAACTAGAATAGGCCAAAGCAGAAGCTGCCATCTTTGTAAAAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACTAGAATAGGCCAAAGCAGAAGCTGCCATCTTTGTAAAAGTAA  250

seq1  GAAAGAGGATGGAATACCATCTCTTTCACTGTACAGATGGGTCAAGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGATGGAATACCATCTCTTTCACTGTACAGATGGGTCAAGATAG  300

seq1  TGATAGGCTAGTCTAGGTTCAAAGGGATGGTAAGTATATTTTATGTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCTAGTCTAGGTTCAAAGGGATGGTAAGTATATTTTATGTGTTG  350

seq1  ATTAAAAAATATTCAAAACTTATTTAAATATAATATGTACTTTTTGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAATATTCAAAACTTATTTAAATATAATATGTACTTTTTGTATA  400

seq1  CATGTAATATTATAATGTATATATTACAATATATACATTATATATGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATATTATAATGTATATATTACAATATATACATTATATATGTACA  450

seq1  ATGTACATATAATGCATATATAATATAATTTGTATAAATAAATTAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATATAATGCATATATAATATAATTTGTATAAATAAATTAAGTAG  500

seq1  ATTAAATAGATTATAGTTCACTGGTATGCAAAACCAAGAGTCTTCTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAGATTATAGTTCACTGGTATGCAAAACCAAGAGTCTTCTACAC  550

seq1  AAATACATATTGGAAACACTAAAATTATTAATATATATATAAAACAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATATTGGAAACACTAAAATTATTAATATATATATAAAACAGTCA  600

seq1  ATTAACAATATGTATAGAGTTATTGCTTCTTCATGCAGTACCATTGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAATATGTATAGAGTTATTGCTTCTTCATGCAGTACCATTGACAG  650

seq1  AATACTACCAATTGATAAGTCAAACTTAAACAGGTTTGTTTCCTACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTACCAATTGATAAGTCAAACTTAAACAGGTTTGTTTCCTACAAAC  700

seq1  ATTTGATGTACAGATCAGGTAATTAGCCTATGCCTTGTCCTTTAGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGTACAGATCAGGTAATTAGCCTATGCCTTGTCCTTTAGCCTTT  750

seq1  ATGTGAATTGTGCTCATTAACTTTCTGCTTAATAGGCATGTCCTGAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATTGTGCTCATTAACTTTCTGCTTAATAGGCATGTCCTGAGCTT  800

seq1  TTAACAAATCCTAGCCTATACCTTTGTTGGTTGCTGTGAATGCGCATACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAATCCTAGCCTATACCTTTGTTGGTTGCTGTGAATGCGCATACC  850

seq1  AGGCACGAGGTGCAATGTACCGTTGGCTTGACGGCACATCAAGAGACGCA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGCACGAGGTGCAATGTACCGTTGGCTTGACGGCACATC-AGAGACGCA  899

seq1  TCCTGCCTCTCTTACTTCTGTTGAGCTTATCTGTGTTGGCA-CTGCCTGA  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCTGCCTCTCTTACTTCTGTTGAGCTTATCTGTGTTGGCACCTGCCTGA  949

seq1  TGGCAAATGCGGTGACATGTAAAGACACCTGCTGGCATTGATTTGGCGTT  999
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGCAAATGCGGTGACATGT-AAGACACCTGCTGGCATTGATTTGGCGTT  998

seq1  GCAGTCAGAGGAGACAAAGAGAGATTACTTTTCAGCATTTTGTGCCAGGG  1049
      ||||||||||||| |  |||||||||||||||||||||||||||||||||
seq2  GCAGTCAGAGGAGCC--AGAGAGATTACTTTTCAGCATTTTGTGCCAGGG  1046

seq1  CTGTTGATCTAATCGGATCTACAC--AGGAGCTCATACAAAGATGCAAGT  1097
      |||||||||| ||||||||  |||   ||||||||||| ||||||| |||
seq2  CTGTTGATCT-ATCGGATCCTCACCAGGGAGCTCATAC-AAGATGC-AGT  1093

seq1  TGTTTTAGGCAGGCATCTGGAGCTG-TCTGGCTGGAAGAGTTATTATGT  1145
      || |||||||||||||||||||||| |||| || |||||| ||||||||
seq2  TG-TTTAGGCAGGCATCTGGAGCTGTTCTGCCT-GAAGAG-TATTATGT  1139