BAC Information

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BAC

Clone NameB6Ng01-045P02
Chromosome2 (Build37)
Map Location 83,950,544 - 84,093,230
singlet/doubletdoublet
Overlap geneLOC383725
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
Downstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045P02.bB6Ng01-045P02.g
ACCDH871250DH871251
length1,178783
definitionDH871250|Mus musculus domesticus DNA, BAC clone: B6Ng01-045P02, 5' end.DH871251|Mus musculus domesticus DNA, BAC clone: B6Ng01-045P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,950,544 - 83,951,725)(84,092,453 - 84,093,230)
sequence
gaattcctggagttcagaggcagtttgccaagcagagcaatttagcgaga
accgggaggagccagtttgaatcagtcagcttgggtaggagtttgagcca
gaacagctgacttgaaccaccaggcagagctcagaatgaactagaaagga
tgagcttattcaacagtaagcctctgagatgacaattacatctggtgaat
aaaagatacatttaaaggagccttgtgacaattacctaattttcctgttc
cttcttttgacataaattgaaaagtcaatataacagtgactcagtggttc
cttctccataaccatctatattaacagtgatttttctttcatttttgata
ggtgatgtaattaacatagtccatttaaaactgttttcatatatttcact
ttaataagtgcctaccaaggtgtatgatatactgttggagccccaatttg
aaggaagacagtgcattttcagagatcgtctatctgaaaaccagatcaga
gaaactggtagaaatggaacaaatatgatacattacatgctcaactaaat
gtcttgataagtaatgaaattacaaataagtttgtggggccagaaagcca
tgtgactgggggaaccagtccagaacaagactgacgttgagacatattca
aacaccacaaatctcatcctgacactggcagaagtttaatacttctttct
atttggtatctgcatatcctagtgcacatagcctgtatgatccccacctc
tgccacgtttaaagtagccagttatagcctggtggctaaatttcagcttt
aacttctttctgtgtaaggatatgtctagcaagcaccgaattcttcttca
tgcaaatgaaacattcctagcaaagaaatatggtccagcaatcttgaata
tgattggtaaatggtttaaagatatgattgattgtagatcaaaataatca
caaagactcccaatgatcaccccatatgtatgccctcctagtctatatgg
tagtcttgggcggcgccggactgggcagcagtacgacgctgcaacaggat
cttctgcacacgtttattggggagaagcttgattgtagagggcgagagac
tttgagtcagaactggtggctgctttataggctaggagaggccgtgtgtc
tcacaccggattggttaggcactaagcc
gaattctgaccatttgggaatctgagatctgaatatgctgttagaggtgc
tgatattgcagaaaggtgggtctggttggaggaagatagtcacatggact
catgtcctgggggcggtaactttctagacccctcctgctgctggtctctt
ctgtctcaagtctactgtggtgtgtacagctaaactcacaggcaaaataa
gtccttaagttgtttatgtcaggtacccttccacagagatgagaacacta
accacgtgttaatgagatacaagttagaatatgcacatctcaaatattgc
aatcttccaaacagcatccacttaatacaaaaataaatacatggatgttt
gaatgagtggacagattaataatgaaagagaaattttggggacatatttg
ttcttgatttcaaagccagtgaaagaaagacagaggtaataaataaacct
gatactaaaagttagtaaaaataaactgagtaagttgcattgtaaaactg
gggctgaactgttggaaaatgtgggttactgcatgaatattcagaaacaa
ctgaacatatttcaggtccccttaggcagtattattttgtctttcactaa
taattttatgacatctgagatcttcactgacactttgttttatttacttt
ttattttttatttgaagaggccagattatccctggttatagtgacttttt
cagccagaagatttttgtttcttcgataccagtaaaaaggggtgagatcc
acatttcctcctttgggaagaattaaggtcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83950544_83951725
seq2: B6Ng01-045P02.b_45_1222

seq1  GAATTCCTGGAGTTCAGAGGCAGTTTGCCAAGCAGAGCAATTTAGCGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAGTTCAGAGGCAGTTTGCCAAGCAGAGCAATTTAGCGAGA  50

seq1  ACCGGGAGGAGCCAGTTTGAATCAGTCAGCTTGGGTAGGAGTTTGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGAGGAGCCAGTTTGAATCAGTCAGCTTGGGTAGGAGTTTGAGCCA  100

seq1  GAACAGCTGACTTGAACCACCAGGCAGAGCTCAGAATGAACTAGAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCTGACTTGAACCACCAGGCAGAGCTCAGAATGAACTAGAAAGGA  150

seq1  TGAGCTTATTCAACAGTAAGCCTCTGAGATGACAATTACATCTGGTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTATTCAACAGTAAGCCTCTGAGATGACAATTACATCTGGTGAAT  200

seq1  AAAAGATACATTTAAAGGAGCCTTGTGACAATTACCTAATTTTCCTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATACATTTAAAGGAGCCTTGTGACAATTACCTAATTTTCCTGTTC  250

seq1  CTTCTTTTGACATAAATTGAAAAGTCAATATAACAGTGACTCAGTGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTGACATAAATTGAAAAGTCAATATAACAGTGACTCAGTGGTTC  300

seq1  CTTCTCCATAACCATCTATATTAACAGTGATTTTTCTTTCATTTTTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCATAACCATCTATATTAACAGTGATTTTTCTTTCATTTTTGATA  350

seq1  GGTGATGTAATTAACATAGTCCATTTAAAACTGTTTTCATATATTTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTAATTAACATAGTCCATTTAAAACTGTTTTCATATATTTCACT  400

seq1  TTAATAAGTGCCTACCAAGGTGTATGATATACTGTTGGAGCCCCAATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGTGCCTACCAAGGTGTATGATATACTGTTGGAGCCCCAATTTG  450

seq1  AAGGAAGACAGTGCATTTTCAGAGATCGTCTATCTGAAAACCAGATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGACAGTGCATTTTCAGAGATCGTCTATCTGAAAACCAGATCAGA  500

seq1  GAAACTGGTAGAAATGGAACAAATATGATACATTACATGCTCAACTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGTAGAAATGGAACAAATATGATACATTACATGCTCAACTAAAT  550

seq1  GTCTTGATAAGTAATGAAATTACAAATAAGTTTGTGGGGCCAGAAAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGATAAGTAATGAAATTACAAATAAGTTTGTGGGGCCAGAAAGCCA  600

seq1  TGTGACTGGGGGAACCAGTCCAGAACAAGACTGACGTTGAGACATATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGGGGGAACCAGTCCAGAACAAGACTGACGTTGAGACATATTCA  650

seq1  AACACCACAAATCTCATCCTGACACTGGCAGAAGTTTAATACTTCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACAAATCTCATCCTGACACTGGCAGAAGTTTAATACTTCTTTCT  700

seq1  ATTTGGTATCTGCATATCCTAGTGCACATAGCCTGTATGATCCCCACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTATCTGCATATCCTAGTGCACATAGCCTGTATGATCCCCACCTC  750

seq1  TGCCACGTTTAAAGTAGCCAGTTATAGCCTGGTGGCTAAATTTCAGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACGTTTAAAGTAGCCAGTTATAGCCTGGTGGCTAAATTTCAGCTTT  800

seq1  AACTTCTTTCTGTGTAAGGATATGTCTAGCAAGCACCGAATTCTTCTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTTCTGTGTAAGGATATGTCTAGCAAGCACCGAATTCTTCTTCA  850

seq1  TGCAAATGAAACATTCCTAGCAAAGAAATATGGTCCAGCAATCTTGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGAAACATTCCTAGCAAAGAAATATGGTCCAGCAATCTTGAATA  900

seq1  TGATTGGTAAATGGTTTAAAGAATAATGATTGATTGTAGATCAAAATAAT  950
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  TGATTGGTAAATGGTTTAAAGA--TATGATTGATTGTAGATCAAAATAAT  948

seq1  CACAAAGAACCCCCAATGATCACCCCATAATGTTATGCCCTCCTAGTCTA  1000
      ||||||| || ||||||||||||||||| ||| |||||||||||||||||
seq2  CACAAAG-ACTCCCAATGATCACCCCAT-ATG-TATGCCCTCCTAGTCTA  995

seq1  TATGGTAGTCTTGCGC-GCGCCGGACTGGCCAGCAGTAACGACGCTGCAA  1049
      ||||||||||||| || |||||||||||| ||||||| ||||||||||||
seq2  TATGGTAGTCTTGGGCGGCGCCGGACTGGGCAGCAGT-ACGACGCTGCAA  1044

seq1  CAGGATCCTTCTGCACACGTTTATT-GGGAG-AGCTTGATTGTAGAGGCG  1097
      |||||| |||||||||||||||||| ||||| ||||||||||||||||  
seq2  CAGGAT-CTTCTGCACACGTTTATTGGGGAGAAGCTTGATTGTAGAGGGC  1093

seq1  AAGAGACTTTGAGCCCAGAACTGGT-GCTGCTTTTATAGGCCTAGGAGAG  1146
       ||||||||||||  |||||||||| ||||| |||||||| |||||||||
seq2  GAGAGACTTTGAG-TCAGAACTGGTGGCTGC-TTTATAGG-CTAGGAGAG  1140

seq1  GC---GTGTCTCACACCCGGATTGGTTATGCACTAAGCC  1182
      ||   |||||||||| |||||||||||| ||||||||||
seq2  GCCGTGTGTCTCACA-CCGGATTGGTTAGGCACTAAGCC  1178

seq1: chr2_84092453_84093230
seq2: B6Ng01-045P02.g_68_850 (reverse)

seq1  GAGGAACTTAATTCTT-CCAAAGGAGGAAATGTGGATCTCA-CTCTTTTT  48
      ||||| |||||||||| |||||||||||||||||||||||| | ||||||
seq2  GAGGACCTTAATTCTTCCCAAAGGAGGAAATGTGGATCTCACCCCTTTTT  50

seq1  ACTGGTATCGAAGAA--CAAAATC-TCTGGCCTGAAACAGTCACTATAAC  95
      |||||||||||||||   |||||| ||||| |||||| ||||||||||||
seq2  ACTGGTATCGAAGAAACAAAAATCTTCTGG-CTGAAAAAGTCACTATAAC  99

seq1  CAGGGAT-ATCTGGCCTCTTCAAATAAAAAATAAAAAGTAAATAAAACAA  144
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATAATCTGGCCTCTTCAAATAAAAAATAAAAAGTAAATAAAACAA  149

seq1  AGTGTCAGTGAAGATCTCAGATGTCATAAAATTATTAGTGAAAGACAAAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGTGAAGATCTCAGATGTCATAAAATTATTAGTGAAAGACAAAA  199

seq1  TAATACTGCCTAAGGGGACCTGAAATATGTTCAGTTGTTTCTGAATATTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTGCCTAAGGGGACCTGAAATATGTTCAGTTGTTTCTGAATATTC  249

seq1  ATGCAGTAACCCACATTTTCCAACAGTTCAGCCCCAGTTTTACAATGCAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTAACCCACATTTTCCAACAGTTCAGCCCCAGTTTTACAATGCAA  299

seq1  CTTACTCAGTTTATTTTTACTAACTTTTAGTATCAGGTTTATTTATTACC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCAGTTTATTTTTACTAACTTTTAGTATCAGGTTTATTTATTACC  349

seq1  TCTGTCTTTCTTTCACTGGCTTTGAAATCAAGAACAAATATGTCCCCAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTCTTTCACTGGCTTTGAAATCAAGAACAAATATGTCCCCAAA  399

seq1  ATTTCTCTTTCATTATTAATCTGTCCACTCATTCAAACATCCATGTATTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTTCATTATTAATCTGTCCACTCATTCAAACATCCATGTATTT  449

seq1  ATTTTTGTATTAAGTGGATGCTGTTTGGAAGATTGCAATATTTGAGATGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTATTAAGTGGATGCTGTTTGGAAGATTGCAATATTTGAGATGT  499

seq1  GCATATTCTAACTTGTATCTCATTAACACGTGGTTAGTGTTCTCATCTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTCTAACTTGTATCTCATTAACACGTGGTTAGTGTTCTCATCTCT  549

seq1  GTGGAAGGGTACCTGACATAAACAACTTAAGGACTTATTTTGCCTGTGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGGTACCTGACATAAACAACTTAAGGACTTATTTTGCCTGTGAG  599

seq1  TTTAGCTGTACACACCACAGTAGACTTGAGACAGAAGAGACCAGCAGCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGTACACACCACAGTAGACTTGAGACAGAAGAGACCAGCAGCAG  649

seq1  GAGGGGTCTAGAAAGTTACCGCCCCCAGGACATGAGTCCATGTGACTATC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTCTAGAAAGTTACCGCCCCCAGGACATGAGTCCATGTGACTATC  699

seq1  TTCCTCCAACCAGACCCACCTTTCTGCAATATCAGCACCTCTAACAGCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAACCAGACCCACCTTTCTGCAATATCAGCACCTCTAACAGCAT  749

seq1  ATTCAGATCTCAGATTCCCAAATGGTCAGAATTC  778
      ||||||||||||||||||||||||||||||||||
seq2  ATTCAGATCTCAGATTCCCAAATGGTCAGAATTC  783