BAC Information

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BAC

Clone NameB6Ng01-046A08
Chromosome2 (Build37)
Map Location 165,825,585 - 165,971,609
singlet/doubletdoublet
Overlap geneNcoa3, Sulf2
Upstream geneNcoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780
Downstream geneLOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046A08.bB6Ng01-046A08.g
ACCDH871307DH871308
length6811,076
definitionDH871307|Mus musculus domesticus DNA, BAC clone: B6Ng01-046A08, 5' end.DH871308|Mus musculus domesticus DNA, BAC clone: B6Ng01-046A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,970,438 - 165,971,609)(165,825,585 - 165,826,694)
sequence
gaattctcttgtttgttattggaattctcttatttcctctctcctcatta
aaatgtcagcctagtgtggtggggccttggtcttctcagagcttggccca
gccctgcaggtaccccggaaagaggcctgcagattggctgctgaaaggaa
cggagtctgtccttgctggaaggtgactgactgctcagaccctggaagtc
caaacctgtttgtcgctggcagagaacaagcttaaagtggaactggttag
attcacacattcccacagtagctggcagaggaggggtcatcaccctgatg
tcccggcagggacagcaggcctcaggaacacggggcgcttgggccatgtg
ggaagtgaaaagttcacctttgagacaggtgatgtgcctcatctcctccc
tggcctcccaacatctaagcgcatcacaggatgggctctgagcactgcct
gggttccgggggacccaggatgatttagggctggagtagaatcctgctcc
gtgtattaggggctcatgtctgcagacctgggagtacagagccctgtcta
gaaaacaaaagaaattgtaaggcctccaaattgactacccagggcctgtg
tttggcttttatgttcttcacccatgtgttattttgaaccttttgggggg
aaaatcaattaatagaatgttgggggtgggg
gaattccactgcactaaacttcaggggactgatattttgttgtaatagag
taaggatttatcagatgttattggtccttttcagttctgcaagtaacttg
ggaagttgctgttcattttaccagtttgacaagctgttactccccaagct
tccatttaatgcttttggacaaaggggaaaaaaaaaaaaaaaaaagtcca
tggtctgctggggagaaaattaaccacctgtgtttgagtctcttcactgg
gagagctcagcagtgtggtaagatttgactgagtgtcccacatttaaaac
gtgatcagaggaaatgagactccaggtcggcaggccattgctggtaatct
gttctgttctcggaaactttaagatgcgtaaatgcctttcattctggtgt
aaaatgtctaagaagggacgccttggccttttcatagtttgagacacttg
gtagttcccccttttaaaatgtgatggtgatatttcagtgtttaatgttg
acaattttgatataaatttgaatattccccccccccccagaaactggttt
aatatatccatgagaaaaaaaaaatctatcctgtgcttagaaatattttt
tccctcctgttatgtacatttttactggctttttaccaagctatttgtag
ctcatcatacccaaggctggcgactttctttcagtttgcttagaattttg
gttggtgcagtaagacatttttgaggccattcttttcagtagatggtcca
tgaaggagggaaatctgaaagagggaatttcaaagcaacccaagcagcgt
ttgaaagtcctctggtcttgagaataatgactggcgggcaggcaggaagc
ctgcagctgtgtgtggtattgttcctccatctctggcatctgagagcttc
atacatagaggagaaagcccggggagggagagaaggcatcacttagaaat
cgaactctctgctcactgaatcagactaatatttattagacatgttctca
aatctgtcaactgacatttttataatggagtactgctatttggaagagcg
cagatcctcctcagttcaaaaactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165970438_165971609
seq2: B6Ng01-046A08.b_44_724 (reverse)

seq1  CCCCACTGCCCCCACACCCAGAGTGCTGGGATTACAGGTGTGTGCTACCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GACAGGTGTAAGATTTCAGTATCACTACAGGCATGTGTGTAGTGTGTTGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTGAAAGCGTGTCATCGCAGGGTGCTGACATCTGTGTGGGCCTTGTGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTGGAGAAATGGGCCTGATACAAGGCCACTGCTCCCCCTGGGCCTGATAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGCCACTGCTCCCCACCCCCACTCTGGCTTTGTTTTCTGCAGAGGCCG  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCTACCGTGGGAAAACTAACCAGGCAGGGCAAGAACAGAGGTGGCCGG  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACTCAGGCGCAGCCCTTGGCTAAGTCAAGAGGCACTCAGGTGGCCTGTCA  350
                                                        
seq2  --------------------------------------------------  0

seq1  GGGCACACACTGTCTCTAACTGAAACTCTAACTTTTGAAATATGCATGTA  400
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCTAGCACTTGGGAGGCTGACGGAAAGGCAGGAGGATTGAGAGTTCCA  450
                                                        
seq2  --------------------------------------------------  0

seq1  GGTCAGCCTGCGCTACATAGCAAGACCCTGTTGGGGGGGACACCCCA-CC  499
                                                ||||| ||
seq2  ------------------------------------------CCCCACCC  8

seq1  CCAACATTCTATTAATTGATTTTCCCCCCAAAAGGTTCAAAATAACACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATTCTATTAATTGATTTTCCCCCCAAAAGGTTCAAAATAACACAT  58

seq1  GGGTGAAGAACATAAAAGCCAAACACAGGCCCTGGGTAGTCAATTTGGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAGAACATAAAAGCCAAACACAGGCCCTGGGTAGTCAATTTGGAG  108

seq1  GCCTTACAATTTCTTTTGTTTTCTAGACAGGGCTCTGTACTCCCAGGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACAATTTCTTTTGTTTTCTAGACAGGGCTCTGTACTCCCAGGTCT  158

seq1  GCAGACATGAGCCCCTAATACACGGAGCAGGATTCTACTCCAGCCCTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATGAGCCCCTAATACACGGAGCAGGATTCTACTCCAGCCCTAAA  208

seq1  TCATCCTGGGTCCCCCGGAACCCAGGCAGTGCTCAGAGCCCATCCTGTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGGGTCCCCCGGAACCCAGGCAGTGCTCAGAGCCCATCCTGTGA  258

seq1  TGCGCTTAGATGTTGGGAGGCCAGGGAGGAGATGAGGCACATCACCTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTTAGATGTTGGGAGGCCAGGGAGGAGATGAGGCACATCACCTGTC  308

seq1  TCAAAGGTGAACTTTTCACTTCCCACATGGCCCAAGCGCCCCGTGTTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTGAACTTTTCACTTCCCACATGGCCCAAGCGCCCCGTGTTCCT  358

seq1  GAGGCCTGCTGTCCCTGCCGGGACATCAGGGTGATGACCCCTCCTCTGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTGCTGTCCCTGCCGGGACATCAGGGTGATGACCCCTCCTCTGCC  408

seq1  AGCTACTGTGGGAATGTGTGAATCTAACCAGTTCCACTTTAAGCTTGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTGTGGGAATGTGTGAATCTAACCAGTTCCACTTTAAGCTTGTTC  458

seq1  TCTGCCAGCGACAAACAGGTTTGGACTTCCAGGGTCTGAGCAGTCAGTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGCGACAAACAGGTTTGGACTTCCAGGGTCTGAGCAGTCAGTCA  508

seq1  CCTTCCAGCAAGGACAGACTCCGTTCCTTTCAGCAGCCAATCTGCAGGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGCAAGGACAGACTCCGTTCCTTTCAGCAGCCAATCTGCAGGCC  558

seq1  TCTTTCCGGGGTACCTGCAGGGCTGGGCCAAGCTCTGAGAAGACCAAGGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCGGGGTACCTGCAGGGCTGGGCCAAGCTCTGAGAAGACCAAGGC  608

seq1  CCCACCACACTAGGCTGACATTTTAATGAGGAGAGAGGAAATAAGAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACACTAGGCTGACATTTTAATGAGGAGAGAGGAAATAAGAGAAT  658

seq1  TCCAATAACAAACAAGAGAATTC  1172
      |||||||||||||||||||||||
seq2  TCCAATAACAAACAAGAGAATTC  681

seq1: chr2_165825585_165826694
seq2: B6Ng01-046A08.g_65_1140

seq1  GAATTCCACTGCACTAAACTTCAGGGGACTGATATTTTGTTGTAATAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCACTAAACTTCAGGGGACTGATATTTTGTTGTAATAGAG  50

seq1  TAAGGATTTATCAGATGTTATTGGTCCTTTTCAGTTCTGCAAGTAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATTTATCAGATGTTATTGGTCCTTTTCAGTTCTGCAAGTAACTTG  100

seq1  GGAAGTTGCTGTTCATTTTACCAGTTTGACAAGCTGTTACTCCCCAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGCTGTTCATTTTACCAGTTTGACAAGCTGTTACTCCCCAAGCT  150

seq1  TCCATTTAATGCTTTTGGACAAAGGGGAAAAAAAAAAAAAAAAAAGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTAATGCTTTTGGACAAAGGGGAAAAAAAAAAAAAAAAAAGTCCA  200

seq1  TGGTCTGCTGGGGAGAAAATTAACCACCTGTGTTTGAGTCTCTTCACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCTGGGGAGAAAATTAACCACCTGTGTTTGAGTCTCTTCACTGG  250

seq1  GAGAGCTCAGCAGTGTGGTAAGATTTGACTGAGTGTCCCACATTTAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTCAGCAGTGTGGTAAGATTTGACTGAGTGTCCCACATTTAAAAC  300

seq1  GTGATCAGAGGAAATGAGACTCCAGGTCGGCAGGCCATTGCTGGTAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGAGGAAATGAGACTCCAGGTCGGCAGGCCATTGCTGGTAATCT  350

seq1  GTTCTGTTCTCGGAAACTTTAAGATGCGTAAATGCCTTTCATTCTGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTCTCGGAAACTTTAAGATGCGTAAATGCCTTTCATTCTGGTGT  400

seq1  AAAATGTCTAAGAAGGGACGCCTTGGCCTTTTCATAGTTTGAGACACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTAAGAAGGGACGCCTTGGCCTTTTCATAGTTTGAGACACTTG  450

seq1  GTAGTTCCCCCTTTTAAAATGTGATGGTGATATTTCAGTGTTTAATGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCCCCCTTTTAAAATGTGATGGTGATATTTCAGTGTTTAATGTTG  500

seq1  ACAATTTTGATATAAATTTGAATATTCCCCCCCCCCCCAGAAACTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTGATATAAATTTGAATATTCCCCCCCCCCCCAGAAACTGGTTT  550

seq1  AATATATCCATGAGAAAAAAAAAATCTATCCTGTGCTTAGAAATATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCCATGAGAAAAAAAAAATCTATCCTGTGCTTAGAAATATTTTT  600

seq1  TCCCTCCTGTTATGTACATTTTTACTGGCTTTTTACCAAGCTATTTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTGTTATGTACATTTTTACTGGCTTTTTACCAAGCTATTTGTAG  650

seq1  CTCATCATACCCAAGGCTGGCGACTTTCTTTCAGTTTGCTTAGAATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCATACCCAAGGCTGGCGACTTTCTTTCAGTTTGCTTAGAATTTTG  700

seq1  GTTGGTGCAGTAAGACATTTTTGAGGCCATTCTTTTCAGTAGATGGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGCAGTAAGACATTTTTGAGGCCATTCTTTTCAGTAGATGGTCCA  750

seq1  TGAAGGAGGGAAATCTGAAAGAGGGAATTTCAAAGCAACCCAAGCAGCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGGGAAATCTGAAAGAGGGAATTTCAAAGCAACCCAAGCAGCGT  800

seq1  TTGAAAGTCCTCTGGTCTTGAGAATAATGACTGGCGGGCAGGCAGGAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTCCTCTGGTCTTGAGAATAATGACTGGCGGGCAGGCAGGAAGC  850

seq1  CTGCAGCTGTGTTGTGGTATTGTTCCTCCATCTCTGGCATCTGAGAGCTT  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGTG-TGTGGTATTGTTCCTCCATCTCTGGCATCTGAGAGCTT  899

seq1  CAATACAATAGAGGAGAAAGCCCGGGGAGGGAGAGAAAGGCATCACTTAG  950
      | |||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  C-ATAC-ATAGAGGAGAAAGCCCGGGGAGGGAGAG-AAGGCATCACTTAG  946

seq1  GAAAATCGAACTCTCTGCTCAACTGAAATCCAAGACTAAATTATTTTATT  1000
        |||||||||||||||||| |||| ||||  |||||||  || ||||||
seq2  --AAATCGAACTCTCTGCTC-ACTG-AATC--AGACTAA--TA-TTTATT  987

seq1  TAAGAACAATTGTTTCTCATAATCTGTTCCAAACTGACATTTTTTATAAT  1050
        || |||  || |||||| |||||||    |||||||| ||||||||||
seq2  --AG-ACA--TG-TTCTCA-AATCTGT---CAACTGACA-TTTTTATAAT  1026

seq1  GGAAGTTAACTGCTATTTGGAAGAGCCGCAGGATCCCTTCCTCAGTTTCA  1100
      || |||  ||||||||||||||||| |||| |||||  ||||||| ||||
seq2  GG-AGT--ACTGCTATTTGGAAGAG-CGCA-GATCC--TCCTCAG-TTCA  1068

seq1  AAACAACTGA  1110
      ||  ||||||
seq2  AA--AACTGA  1076