BAC Information

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BAC

Clone NameB6Ng01-046B17
Chromosome5 (Build37)2 (Build37)
Map Location 95,904,361 - 95,905,451142,776,722 - 142,777,220
singlet/doubletsingletsinglet
Overlap geneD5Ertd577e
Upstream geneLOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169
Downstream geneLOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046B17.bB6Ng01-046B17.g
ACCDH871371DH871372
length1,086895
definitionDH871371|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B17, 5' end.DH871372|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,904,361 - 95,905,451)(142,776,722 - 142,777,220)
sequence
gaattcccctaccctggagcatctagccttcacaggatcgagggcctctc
ccccaactgatgcccaacaaagccatctactgacacatgtgcagctaaag
caatgggtccatacatgtggatactttggttggtggttcagtctctggga
gctcttgggttctggttggatgatattgttgctcttcctatggagctgca
aaccctttcagcacctccagttcttttactaacatctccattggggaccc
cttactctgaactttgtttattgccttgtttgttccttgacctaaaactg
actttatcctttgcatgtatttagactggtataaaagcagactaaagaaa
agtgaatctacttcagccttagcactggatagagtcatggaataatgttg
tctaatcgtcattcacaaccttgagaccctgttgcctgactgagctagct
ttgtcatactttacacaattatttttccattctggaataaagaggctcgc
ttcatgctttgccaatctttaactgtagtagcactcagaaagctgaggca
ggatggcttcatccattttgcagggaattctgtggtgtaactccagtagt
aaatctttgcttggcattcatattttaggttataaaccactgtacaatct
agaaaaatgggggcatgcctgtgttcccagaacatgtgagtctgaataga
ggctcagaaatccaatggcatctttgctttaatagatagtgtgaggcaag
cctgctctgtactaaaatgttttcaaaacaagttaaaacgtatgtcaggg
aggggcatgccatcaatgattctaaaaagttggagcagatttgagaaaga
atcactggacatggagagatgatcagggtttactgggcagagagaaaatc
tctaggattagagattttcagaatacctgatattgcaaacacataaattc
aatgcccaacaagtgtgttgtgtcttggaactacctttagcttcagtgtt
tctgggatctctccctttcctagctaataaggagtattgctaccatgcag
gaaacaacacacacacatgccaatcacacactcaca
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagcccaccttcttgaactctttatatatatatattggatattag
tcccctatctgatttaggataggtaaagatcctttgccaatctgttgatg
gtctttttgtcttgttgatggtgtcttttgccttgcagaagctttgcaac
tttatgcgttcccgtttattgattctcgatcttatggcacaagccgttgc
tgttttttccggaacatttcccctgtgcccatatctttgaggcttttccc
tactttctactctataagtttcagtgtctctggttttatgtggagttcct
taatccacttagatttgaccttagtacaggagataggaatggatcaattc
acattcttctccatgataaccgccagttgtgccagcaccatttgttgaaa
atgctgtcttttttccactggatgcttttagctcccttgtcaaagatcaa
gtgaccataggtgtgtgggatcaggtgacagcagatgctggcaagaatat
ggagaaagaggaacactcctccattgttgttgtgttttcaagcttgtaaa
accactctggaaatcagtctggcagttcctcagaaaactggatatagtac
taccagaggatcctgcaatacctctcctgggcatatatccagaagatgtc
ccaaccggtaagaagaacacatgcttcactatgtttcatagcagccttgt
ttataatagccagaagctggaaagaacccagatgtccctcaacagaggat
ggatacagaaaatgtggtacgtttacacaatggagtactactcagctatt
aaaagaatgaatttatgaattcctaggcaatggatggacctggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95904361_95905451
seq2: B6Ng01-046B17.b_44_1129

seq1  GAATTCCCCTACCCTGGAGCATCTAGCCTTCACAGGATCGAGGGCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTACCCTGGAGCATCTAGCCTTCACAGGATCGAGGGCCTCTC  50

seq1  CCCCAACTGATGCCCAACAAAGCCATCTACTGACACATGTGCAGCTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTGATGCCCAACAAAGCCATCTACTGACACATGTGCAGCTAAAG  100

seq1  CAATGGGTCCATACATGTGGATACTTTGGTTGGTGGTTCAGTCTCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGTCCATACATGTGGATACTTTGGTTGGTGGTTCAGTCTCTGGGA  150

seq1  GCTCTTGGGTTCTGGTTGGATGATATTGTTGCTCTTCCTATGGAGCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGGTTCTGGTTGGATGATATTGTTGCTCTTCCTATGGAGCTGCA  200

seq1  AACCCTTTCAGCACCTCCAGTTCTTTTACTAACATCTCCATTGGGGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTCAGCACCTCCAGTTCTTTTACTAACATCTCCATTGGGGACCC  250

seq1  CTTACTCTGAACTTTGTTTATTGCCTTGTTTGTTCCTTGACCTAAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTGAACTTTGTTTATTGCCTTGTTTGTTCCTTGACCTAAAACTG  300

seq1  ACTTTATCCTTTGCATGTATTTAGACTGGTATAAAAGCAGACTAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATCCTTTGCATGTATTTAGACTGGTATAAAAGCAGACTAAAGAAA  350

seq1  AGTGAATCTACTTCAGCCTTAGCACTGGATAGAGTCATGGAATAATGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATCTACTTCAGCCTTAGCACTGGATAGAGTCATGGAATAATGTTG  400

seq1  TCTAATCGTCATTCACAACCTTGAGACCCTGTTGCCTGACTGAGCTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCGTCATTCACAACCTTGAGACCCTGTTGCCTGACTGAGCTAGCT  450

seq1  TTGTCATACTTTACACAATTATTTTTCCATTCTGGAATAAAGAGGCTCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATACTTTACACAATTATTTTTCCATTCTGGAATAAAGAGGCTCGC  500

seq1  TTCATGCTTTGCCAATCTTTAACTGTAGTAGCACTCAGAAAGCTGAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTTTGCCAATCTTTAACTGTAGTAGCACTCAGAAAGCTGAGGCA  550

seq1  GGATGGCTTCATCCATTTTGCAGGGAATTCTGTGGTGTAACTCCAGTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCTTCATCCATTTTGCAGGGAATTCTGTGGTGTAACTCCAGTAGT  600

seq1  AAATCTTTGCTTGGCATTCATATTTTAGGTTATAAACCACTGTACAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTGCTTGGCATTCATATTTTAGGTTATAAACCACTGTACAATCT  650

seq1  AGAAAAATGGGGGCATGCCTGTGTTCCCAGAACATGTGAGTCTGAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGGGGGCATGCCTGTGTTCCCAGAACATGTGAGTCTGAATAGA  700

seq1  GGCTCAGAAATCCAATGGCATCTTTGCTTTAATAGATAGTGTGAGGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAAATCCAATGGCATCTTTGCTTTAATAGATAGTGTGAGGCAAG  750

seq1  CCTGCTCTGTACTAAAATGTTTTCAAAACAAGTTAAAAGGTATGTCAGGG  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTGCTCTGTACTAAAATGTTTTCAAAACAAGTTAAAACGTATGTCAGGG  800

seq1  AGGGGCATGCCATCAATGATTCTAAAAAGTTGGAGCAGATTTGAGAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGGGCATGCCATCAATGATTCTAAAAAGTTGGAGCAGATTTGAG-AAAG  849

seq1  AATCACTGGACATGGAGAGATGATCAGGGTTTACTGGGCAGAGAGAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGGACATGGAGAGATGATCAGGGTTTACTGGGCAGAGAGAAAAT  899

seq1  CTCTAGGATTAGGAGATTTTCAGAATACCTGATATTTGCAAAACACATAA  950
      ||||||||||| |||||||||||||||||||||| |||| ||||||||||
seq2  CTCTAGGATTA-GAGATTTTCAGAATACCTGATA-TTGC-AAACACATAA  946

seq1  ATTCAATGCCCAACAAGTGTGGTTGTGTCTTGGAACTACCTTTAGCTTCA  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTCAATGCCCAACAAGTGT-GTTGTGTCTTGGAACTACCTTTAGCTTCA  995

seq1  GTGTTTCTGGGATCCTCTTCCCTTTCCTAGGCTTAATAAGTAGTA-TGCT  1049
      ||||||||||||| ||| ||||||||||||   ||||||| |||| ||||
seq2  GTGTTTCTGGGAT-CTC-TCCCTTTCCTAG--CTAATAAGGAGTATTGCT  1041

seq1  ACCATGCA-GAAACACACACACACACATGC---ACACACACACACA  1091
      |||||||| |||||| ||||||||||||||    ||||||| ||||
seq2  ACCATGCAGGAAACA-ACACACACACATGCCAATCACACACTCACA  1086

seq1: chr2_142776722_142777220
seq2: B6Ng01-046B17.g_84_584 (reverse)

seq1  CCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCC  50
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  CCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAAGCATCC  50

seq1  AGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTG  100
      || |||| |||||||||||||||||||| ||||||||||||||||||  |
seq2  AGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGG  100

seq1  TTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAA  150
      |||||||| ||||||||| |||| ||||||| | ||||||| ||||||||
seq2  TTATCATGGAGAAGAATGTGAATTGATCCATTCCTATCTCC-TGTACTAA  149

seq1  GGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGA  200
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  GGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGA  199

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGG  250
      ||||||||||| ||||||| |||||||||||  |||||||||||||||||
seq2  AACTTATAGAGTAGAAAGTAGGGAAAAGCCTCAAAGATATGGGCACAGGG  249

seq1  GACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAAT  300
      || |  |||| ||| | |||||||| |||||||||  |||||||||||||
seq2  GAAATGTTCCGGAA-AAAACAGCAACGGCTTGTGCCATAAGATCGAGAAT  298

seq1  TGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACA  350
        | ||| |||| |  || ||  | ||||| |||||||||||||||||||
seq2  CAATAAACGGGAACGCATAAAGTTGCAAAGCTTCTGCAAGGCAAAAGACA  348

seq1  CCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACC  400
      || |||| ||||||||||||||| ||||||||||| ||||||||||||||
seq2  CCATCAACAAGACAAAAAGACCATCAACAGATTGGCAAAGGATCTTTACC  398

seq1  TATCCTAAATCAGATAGGGGACTAATATCCA----ACATATATAAAGAAC  446
      |||||||||||||||||||||||||||||||    | |||||||||||  
seq2  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATATATAAAGAGT  448

seq1  TCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGC  496
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGGTGGGCTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGC  498

seq1  TCA  499
      |||
seq2  TCA  501