BAC Information

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BAC

Clone NameB6Ng01-046C17
Chromosome2 (Build37)
Map Location 90,073,386 - 90,074,038
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506
Downstream geneOlfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046C17.bB6Ng01-046C17.g
ACCDH871412DH871413
length1,2241,050
definitionDH871412|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C17, 5' end.DH871413|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggaccatacctaaacatgataaaagcaacctacagcaaacca
gtagccagcatcaaagtaaatggtgaaaagctggaaacaatcccactaaa
atcagggactggacaaggcttcacactttctccctatctattcaacatag
tacttgaagtcctagccagagcaatttgacaccaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgatgaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaactag
ggaaacaacacccttctcaatagtcaccaataatataaaataccttagcg
tgactctaactaaggaagcgaaagatctgtatgataagaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccgtg
ctcatagattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aatgaattagaaagatcaatctgcaaattcatctgaaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaatctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgttataaaaactgta
tggtactggtatagtgacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaaggtgc
taaatcatccagtgagaagacagcatttcacaaatgtgctggcatactgg
tggtatcatgtagcagatgtgaatgatcattctatcttcttgtactaagg
tcaaatctagtggatcaggactcacataaacagagacctgaaacttatag
aagagaagtgggaaagtcctcagaattcgtatgggaatctgaatagacgc
aatgcttggtcgtaatcgcaatgtgcaatgaaccttaactgctaggtctg
taggcaaacccgcctaagataatggcatacattggaagctactgcttata
aatgggacacaattccatgtatga
gaattcttatgtttgcctttcgccatctggtattctctggagctagttgt
tatagttgtctgtggttagggcgtgttcctcaggtgattattagcctcta
tcagcagacttgggagactagctctctccttattttcagtggtcagagta
ctctctgcaggcaagctctcctcttgcagggaaggtgcctagatatctag
tgtttgaacctgcctcctggcagaagttgtgttccactcaccagaggtct
taggatcccgtggcggatcctgtgtgggtccttgtgggtgtccggagact
ccccgggccaggaaccgaggtgctgcagtgggccggaagggacttgagcc
ccggattaggccgggttatctgcttccttaataaatgcagtctcaggtcc
cgcatgattggattggagcaggcgctgtgttccactcaccagaggtctta
agatcccatggaaaatcctgtgtgggtccttgcggctgtccggagactcc
ctgggccagggaccccggtgctgcagtgggccggaagggacttgagcctc
agatcaggccgggtgatctgcttccttcccaggtgcatctttcagggcat
tttccagagaaggtaaattgaggggggaagcccactttggttgtgggtag
ttcagctccataggctggcgtgtgagcagagtaaaaaatgcaaaaaagaa
gccagccaagcactggaatttcatgatttcacctttgtgtctaccaagaa
gtgaagaaccgcctctgccacatgtttctgctgccttgattttctactca
aggtcatggagtcaagaaccataaatggacctttctcaatctatggactc
agatagcatttcctttctagttgtttctgtattcatctgtcatggtgatg
tgagaagcactacatgaaatccttgttctaataacaggtcacttctgtga
ctaccctgaacatgtggctttagccttttgctagttgcaggaggaacttg
agaagttgaggatgtagtcaagagcattggtgttgtaccaagctctaggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90073386_90074038
seq2: B6Ng01-046C17.g_486_1116

seq1  AGGCGCTGTGTTCCACTCACCAGAGGTCTTAAGATCCCATGGAAAATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCTGTGTTCCACTCACCAGAGGTCTTAAGATCCCATGGAAAATCCT  50

seq1  GTGTGGGTCCTTGCGGCTGTCCGGAGACTCCCTGGGCCAGGGACCCCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTCCTTGCGGCTGTCCGGAGACTCCCTGGGCCAGGGACCCCGGT  100

seq1  GCTGCAGTGGGCCGTAAGGGACTTGAGCCTCAGATCAGGCCGGGTGATCT  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTGCAGTGGGCCGGAAGGGACTTGAGCCTCAGATCAGGCCGGGTGATCT  150

seq1  GCTTCCTTCCCAGGTGCATCTTTCAGGGCA-TTTCCAGAGAAGGTAAATT  199
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTTCCTTCCCAGGTGCATCTTTCAGGGCATTTTCCAGAGAAGGTAAATT  200

seq1  GAGGGGGGAAGCCCACTTTGGTTGTGGGTAGTTCAGCTCCATAGGCTGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGGAAGCCCACTTTGGTTGTGGGTAGTTCAGCTCCATAGGCTGGC  250

seq1  GTGTGAGCAGAGTAAAAAATGCAAAAAAGAAGCCAGCCAAGCACTGGAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGCAGAGTAAAAAATGCAAAAAAGAAGCCAGCCAAGCACTGGAAT  300

seq1  TTCATGATTTCACCTTTGTGTCTACCAAGAAGTGAAGAACCGCCTCTGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATTTCACCTTTGTGTCTACCAAGAAGTGAAGAACCGCCTCTGCC  350

seq1  ACATGTTTCTGCTGCCTTGATTTTCTACTCAAGGTCATGGAGTCAAGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTCTGCTGCCTTGATTTTCTACTCAAGGTCATGGAGTCAAGAAC  400

seq1  CATAAATGGACCTTTCTCAATCTATGGACCCAGATAAGCATTTCCTTTCT  449
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  CATAAATGGACCTTTCTCAATCTATGGACTCAGAT-AGCATTTCCTTTCT  449

seq1  TAGGTTGTTTCTGTTATTCATTCTGTCATGGTGATGTGAGAAGCAACTAA  499
         |||||||||| |||||| ||||||||||||||||||||||| ||| |
seq2  --AGTTGTTTCTG-TATTCA-TCTGTCATGGTGATGTGAGAAGC-ACT-A  493

seq1  CATGAAATCCTTGTTCTAAATAAACAGGGTCACTTCTGTGACCAACCCTG  549
      |||||||||||||||||||   |||| |||||||||||||| | ||||||
seq2  CATGAAATCCTTGTTCTAA--TAACA-GGTCACTTCTGTGA-CTACCCTG  539

seq1  AACATGTGGGCTTTAGCCTTTATGGCTAGTTTGCAGGAGGAACTTGGAAG  599
      ||||||| ||||||||||||  | ||||| ||||||||||||||||  ||
seq2  AACATGT-GGCTTTAGCCTT--TTGCTAG-TTGCAGGAGGAACTTG--AG  583

seq1  AGTTTGAGGATATAAGTAAAAGAAGCATTGGGTGTTGTAACCAAAGCTCT  649
      |  |||||||| | ||| ||   |||||| |||||||||  | |||||||
seq2  AAGTTGAGGATGT-AGTCAA--GAGCATT-GGTGTTGTA--CCAAGCTCT  627

seq1  AGGG  653
      ||||
seq2  AGGG  631