BAC Information

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BAC

Clone NameB6Ng01-046N06
Chromosome2 (Build37)X (Build37)
Map Location 142,776,671 - 142,777,69810,568,244 - 10,569,297
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046N06.bB6Ng01-046N06.g
ACCDH871875DH871876
length9111,031
definitionDH871875|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N06, 5' end.DH871876|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,671 - 142,777,698)(10,568,244 - 10,569,297)
sequence
gaattctttgttcagttctgaaccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataaatttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaatctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggtttgttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgcccatccatgagcatgggagatcttccatcttc
tgagatcttccttaatttctttcttcagagatttgaagttttatcataca
gatctttcact
gaattcccctgatttgtaattccttcgcccaaaggtacagccaaaagagg
tgtcttaggctgagtttactgtagagcaaaatttgcgtcagagatttgca
tgcaagaaatttgttggtatcaccctcaagagccacatctataaaggagg
gaaggcaggcggcaggatggggcagagagaacttaaaatgtaatgctgtg
gcaggggcctcagctgacacctcagggaactctagcactgacgtgtctgc
ggaatccccccaaacaaaggatgtgggctttagtaattcgtcccatccag
atggaggaggtatgaccttggacaaaaggtcctttcaggtgaaagcagat
cccagagagggactgagtaggggacagagagagtatgtaaaaaggcccct
ggaacagcacagcatcagccacaagaagccagaaatgcaaacacctgcga
gagcagctgtctggttccttcagataacaaggactgaaggctcgctttca
gatccttctggataacgtttggctatgggtcatggaaggggatctgagct
tgacaggaacagaaccaaggtctcagatgagaaaagagccaagggagagg
aatgtggcctcagactccactcagtaggcataagcttgcctgggactaat
tgtgcaaagagctccttcactcccccacccgccacccgctggccttgaag
tgtccagatgtcctataagcaaaccttgctttctgtgcgactgtaggcag
aatcggcagctctttctgttttcttccctttggcaaatgaaaactgggcc
ggccacattcaagggctcattcaaacacagcttctataaatccattcagg
gttgcctttctctttaaagcaatcagagtgggtgctttggggaatggctg
agtgtaagacaatgcttcagagtgtgaggacccaaattgtaaaagctgga
catgggtgtagtggcttttgcccgtattgggaggcggagacagcacgttc
agactgtctaccagcagctatatgaaaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776671_142777698
seq2: B6Ng01-046N06.b_46_613 (reverse)

seq1  TAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGA  50

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  100

seq1  CAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  150

seq1  GTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTA  200
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  200

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  250

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  300

seq1  GGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  350

seq1  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  400

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  450

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  500

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGTTCA  550

seq1  CAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  600
       ||            ||| |||||    |||                   
seq2  GAA----------CTGAACAAAGA----ATTC------------------  568

seq1  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  650
                                                        
seq2  --------------------------------------------------  568

seq1  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  700
                                                        
seq2  --------------------------------------------------  568

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  750
                                                        
seq2  --------------------------------------------------  568

seq1  TGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTA  800
                                                        
seq2  --------------------------------------------------  568

seq1  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  850
                                                        
seq2  --------------------------------------------------  568

seq1  GGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAA  900
                                                        
seq2  --------------------------------------------------  568

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  950
                                                        
seq2  --------------------------------------------------  568

seq1  AAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAA  1000
                                                        
seq2  --------------------------------------------------  568

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  1028
                                  
seq2  ----------------------------  568

seq1: chrX_10568244_10569297
seq2: B6Ng01-046N06.g_68_1098

seq1  GAATTCCCCTGATTTGTAATTCCTTCGCCCAAAGGTACAGCCAAAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGATTTGTAATTCCTTCGCCCAAAGGTACAGCCAAAAGAGG  50

seq1  TGTCTTAGGCTGAGTTTACTGTAGAGCAAAATTTGCGTCAGAGATTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGGCTGAGTTTACTGTAGAGCAAAATTTGCGTCAGAGATTTGCA  100

seq1  TGCAAGAAATTTGTTGGTATCACCCTCAAGAGCCACATCTATAAAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAAATTTGTTGGTATCACCCTCAAGAGCCACATCTATAAAGGAGG  150

seq1  GAAGGCAGGCGGCAGGATGGGGCAGAGAGAACTTAAAATGTAATGCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGGCGGCAGGATGGGGCAGAGAGAACTTAAAATGTAATGCTGTG  200

seq1  GCAGGGGCCTCAGCTGACACCTCAGGGAACTCTAGCACTGACGTGTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGCCTCAGCTGACACCTCAGGGAACTCTAGCACTGACGTGTCTGC  250

seq1  GGAATCCCCCCAAACAAAGGATGTGGGCTTTAGTAATTCGTCCCATCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCCCCCAAACAAAGGATGTGGGCTTTAGTAATTCGTCCCATCCAG  300

seq1  ATGGAGGAGGTATGACCTTGGACAAAAGGTCCTTTCAGGTGAAAGCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGGTATGACCTTGGACAAAAGGTCCTTTCAGGTGAAAGCAGAT  350

seq1  CCCAGAGAGGGACTGAGTAGGGGACAGAGAGAGTATGTAAAAAGGCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAGGGACTGAGTAGGGGACAGAGAGAGTATGTAAAAAGGCCCCT  400

seq1  GGAACAGCACAGCATCAGCCACAAGAAGCCAGAAATGCAAACACCTGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGCACAGCATCAGCCACAAGAAGCCAGAAATGCAAACACCTGCGA  450

seq1  GAGCAGCTGTCTGGTTCCTTCAGATAACAAGGACTGAAGGCTCGCTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTGTCTGGTTCCTTCAGATAACAAGGACTGAAGGCTCGCTTTCA  500

seq1  GATCCTTCTGGATAACGTTTGGCTATGGGTCATGGAAGGGGATCTGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTCTGGATAACGTTTGGCTATGGGTCATGGAAGGGGATCTGAGCT  550

seq1  TGACAGGAACAGAACCAAGGTCTCAGATGAGAAAAGAGCCAAGGGAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAACAGAACCAAGGTCTCAGATGAGAAAAGAGCCAAGGGAGAGG  600

seq1  AATGTGGCCTCAGACTCCACTCAGTAGGCATAAGCTTGCCTGGGACTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCCTCAGACTCCACTCAGTAGGCATAAGCTTGCCTGGGACTAAT  650

seq1  TGTGCAAAGAGCTCCTTCACTCCCCCACCCGCCACCCGCTGGCCTTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAGAGCTCCTTCACTCCCCCACCCGCCACCCGCTGGCCTTGAAG  700

seq1  TGTCCAGATGTCCTATAAAGCAAACCTTGCTTTCTGTGCGACTGTAGGCA  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTCCAGATGTCCTAT-AAGCAAACCTTGCTTTCTGTGCGACTGTAGGCA  749

seq1  GAAATCGGCAGCTCTTTCTGTTTTCTTCCCCTTTGGCAAATGAAAACTGG  800
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  G-AATCGGCAGCTCTTTCTGTTTTCTT-CCCTTTGGCAAATGAAAACTGG  797

seq1  GCCGGCCACATTCAAGGGCTCATTCAAACACAGCTTCTATAAATCCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCCACATTCAAGGGCTCATTCAAACACAGCTTCTATAAATCCATTC  847

seq1  AGGGTTGCCTTTCTCTTTAAAAGCAAATCAGGAGGTGGGGTGCTTTGGGG  900
      |||||||||||||||||| ||||| ||||| |||   |||||||||||||
seq2  AGGGTTGCCTTTCTCTTT-AAAGC-AATCA-GAG--TGGGTGCTTTGGGG  892

seq1  AATGGCTGAGTGGTAAGACAATGCTTCCAGAGTGTGAGGACCCAAATTGT  950
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  AATGGCTGAGT-GTAAGACAATGCTT-CAGAGTGTGAGGACCCAAATTGT  940

seq1  AAAAGGCTGGACATGGGTGTAGTTGGCTTTTGCCCCGGTATTGGGAGGCG  1000
      |||| ||||||||||||||||| ||||||||||||  |||||||||||||
seq2  AAAA-GCTGGACATGGGTGTAG-TGGCTTTTGCCC--GTATTGGGAGGCG  986

seq1  GAGACAGGCACGTTTCAAGAACTGTCTAACCAGCAAGCCTATATGAGAAA  1050
      |||||| ||||| ||||   ||||||| |||||||   ||||||  ||||
seq2  GAGACA-GCACG-TTCA--GACTGTCT-ACCAGCA--GCTATAT--GAAA  1027

seq1  AGGC  1054
      ||||
seq2  AGGC  1031