BAC Information

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BAC

Clone NameB6Ng01-049C08
Chromosome2 (Build37)4 (Build37)
Map Location 42,762,079 - 42,763,07618,954,670 - 18,954,784
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLrp1b, LOC625094
Downstream geneLOC100041228, LOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049C08.bB6Ng01-049C08.g
ACCDH873491DH873492
length983127
definitionDH873491|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C08, 5' end.DH873492|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,762,079 - 42,763,076)(18,954,670 - 18,954,784)
sequence
gaattcacatgctaatgacagatgtaatgcttgaaatctgctccaccatg
gcttctagcattgtcttatgtagtgtatcttgcttttcttcccctaaaaa
caacaattcaagtaacacatctttctgtattctgtttcctcacaagattt
gttcatttttaatttcatagtacatgtgtttccctacatatgtttatgtg
tgtacataatgtttcagcttgttgtctgttgcttctagacattaaaaaag
agtatccaatcatctggacttttagggagagattgttcggagtcactatg
ttggtgctgttaaacaaaccaaagacctccacaagagcagcaggtgatat
taactgacaagtcacttgactggcctcactgtacctcaggttccgactca
gatttgccttcccattgtactcatgggaacgcggttacttccactgtcca
tctcctgcatgcaggaggtaagagtgacaagagttaattcacatgatata
tttaagattggtctggcacgtggttgctagtgtgttatttattattaaaa
ctctattatatgaaactgctacttttcatatcatggcatttgagaatccc
acacatcatctcttagtcagattgatgacattttactgtctcttaactgt
ggttatttgtgggaatttttctctacatatgctgattccatttaaaatga
gtacttcgatttattgtaacatgaggatcctctagataaaatgttagttt
catctcttcatatattcataatatttacattgagttggttctaatcttcc
tgagctgtaagaaaacatttctctggaatccactgtaatagaacttatat
ttcaacaacactgattgagatttcataaattcatgttagttttcatacag
aaacatataatagagctgatgcattgactacaattttactcagcttacac
gagctgagtagagattacatgtgttagatctgt
caggaccaataatgggagtttgtgggtttcagagaagaaggagggggagg
ggataggggaattttctaggggaactagggaaggggataacatttgcaat
gtaaataaagaaaatatctaattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_42762079_42763076
seq2: B6Ng01-049C08.b_44_1026

seq1  GAATTCACATGCTAATGACAGATGTAATGCTTGAAATCTGCTCCACCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCTAATGACAGATGTAATGCTTGAAATCTGCTCCACCATG  50

seq1  GCTTCTAGCATTGTCTTATGTAGTGTATCTTGCTTTTCTTCCCCT-AAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTTCTAGCATTGTCTTATGTAGTGTATCTTGCTTTTCTTCCCCTAAAAA  100

seq1  CAACAATTCAAGTAACACATCTTTCTGTATTCTGTTTCCTCACAAGATTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTCAAGTAACACATCTTTCTGTATTCTGTTTCCTCACAAGATTT  150

seq1  GTTCATTTTTAATTTCATAGTACATGTGTTTCCCTACATATGTTTATGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTTAATTTCATAGTACATGTGTTTCCCTACATATGTTTATGTG  200

seq1  TGTACATAATGTTTCAGCTTGTTGTCTGTTGCTTCTAGACATTAAAAAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAATGTTTCAGCTTGTTGTCTGTTGCTTCTAGACATTAAAAAAG  250

seq1  AGTATCCAATCATCTGGACTTTTAGGGAGAGATTGTTCGGAGTCACTATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCAATCATCTGGACTTTTAGGGAGAGATTGTTCGGAGTCACTATG  300

seq1  TTGGTGCTGTTAAACAAACCAAAGACCTCCACAAGAGCAGCAGGTGATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTGTTAAACAAACCAAAGACCTCCACAAGAGCAGCAGGTGATAT  350

seq1  TAACTGACAAGTCACTTGACTGGCCTCACTGTACCTCAGGTTCCGACTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGACAAGTCACTTGACTGGCCTCACTGTACCTCAGGTTCCGACTCA  400

seq1  GATTTGCCTTCCCATTGTACTCATGGGAACGCGGTTACTTCCACTGTCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCCTTCCCATTGTACTCATGGGAACGCGGTTACTTCCACTGTCCA  450

seq1  TCTCCTGCATGCAGGAGGTAAGAGTGACAAGAGTTAATTCACATGATATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCATGCAGGAGGTAAGAGTGACAAGAGTTAATTCACATGATATA  500

seq1  TTTAAGATTGGTCTGGCACGTGGTTGCTAGTGTGTTATTTATTATTAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATTGGTCTGGCACGTGGTTGCTAGTGTGTTATTTATTATTAAAA  550

seq1  CTCTATTATATGAAACTGCTACTTTTCATATCATGGCATTTGAGAATCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTATATGAAACTGCTACTTTTCATATCATGGCATTTGAGAATCCC  600

seq1  ACACATCATCTCTTAGTCAGATTGATGACATTTTACTGTCTCTTAACTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCATCTCTTAGTCAGATTGATGACATTTTACTGTCTCTTAACTGT  650

seq1  GGTTATTTGTGGGAATTTTTCTCTACATATGCTGATTCCATTTAAAATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTGTGGGAATTTTTCTCTACATATGCTGATTCCATTTAAAATGA  700

seq1  GTACTTCGATTTATTGTAACATGAGGATCCTCTAGATAAAATGTTAGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCGATTTATTGTAACATGAGGATCCTCTAGATAAAATGTTAGTTT  750

seq1  CATCTCTTCATATATTCATAATATTTACATTGAGTTGGTTCTAATCTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTCATATATTCATAATATTTACATTGAGTTGGTTCTAATCTTCC  800

seq1  TGAGCTGTAAGAAAACATTTCTCTGGAATCCACTGTAATAGAACTTATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTAAGAAAACATTTCTCTGGAATCCACTGTAATAGAACTTATAT  850

seq1  TTCAACAACAACTGATTGAGATTTCATAAATTCATGTTAGGTTTTCATAC  899
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  TTCAACAAC-ACTGATTGAGATTTCATAAATTCATGTTA-GTTTTCATAC  898

seq1  AGAAACATATAAATAGAAGCTGATGCATTGAACTACAAATTTTAACTCAG  949
      |||||||||| ||||| ||||||||||||| |||||||  ||| ||||||
seq2  AGAAACATAT-AATAG-AGCTGATGCATTG-ACTACAA--TTTTACTCAG  943

seq1  CCTTACACGAAGGCTGAGGTAGGAGGATTACCATGTGTTTAAGATCTGT  998
       |||||||||  ||||| ||||   ||||| ||||||||  ||||||||
seq2  -CTTACACGA--GCTGA-GTAG--AGATTA-CATGTGTT--AGATCTGT  983

seq1: chr4_18954670_18954784
seq2: B6Ng01-049C08.g_126_198 (reverse)

seq1  TTTTTATTAGATATTTTCTTTATTTACATTTTTATCAGATATTTTTCTTT  50
                                  |||| || ||||| ||||||||
seq2  ----------------------------TTTTAATTAGATA-TTTTCTTT  21

seq1  ATTCACATTTCAAATGTTATCCTCTTTCCTAGTTCCCCTCAGAAAACCAC  100
      ||| ||||| |||||||||||| ||| |||||||||||| ||||||    
seq2  ATTTACATTGCAAATGTTATCCCCTTCCCTAGTTCCCCT-AGAAAA----  66

seq1  TTACCCGCTTCCCCT  115
              |||||||
seq2  --------TTCCCCT  73