BAC Information

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BAC

Clone NameB6Ng01-049O13
Chromosome2 (Build37)
Map Location 174,769,372 - 174,909,527
singlet/doubletdoublet
Overlap geneLOC545487, LOC100043760
Upstream geneLOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
Downstream geneLOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126, LOC100039017, LOC100039036, LOC100039049, LOC626832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049O13.bB6Ng01-049O13.g
ACCDH874026DH874027
length1,1001,045
definitionDH874026|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O13, 5' end.DH874027|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,908,410 - 174,909,527)(174,769,372 - 174,770,433)
sequence
gaattcaaccttatacctgttcctctttatttgtaaccccctaatttgta
accctgtaacccagggaggttagacaacactcattccctggtgtcttttg
tctcactgatcagtcagaacccagcttgacaggagttgtaggactgtttt
ccaagccctgggcagcagagggaggattaggagttcaaagcaagtcttaa
ctacatggcataaagaaagtaggagctacaggagatgtttctctaaacag
acagatatgaaatctctttaaaaacaggaatgaaattcttaattttgggg
caatattggagaaaagaaacacttaagagatcacccatggatagtcaaaa
tgaaatttaaaatctaataccaaaaatgaactttttaaaaagaaaaaaat
aaatgaaaaaatatattactgtactgatttgaaaaagatcatgcccttcc
tggtagaaggaatggcaataataagatagtgtttgaccttgcccctatga
tctttgttaactactgagatctataatgtgacacacacagctacagctaa
tggcatgtgtttatatttctgagatcacttaaatatgtcaccaaggtttg
cacatatctcataatacagatcataaaatgggaattcatcactcactggc
tcaagctaacctgcccaaaataaacacccaccaatctagttttactaata
accattctctgttgtaaacttctctctcaatttatgatttgattttttgt
gtgaacttgtagtgtactcagtaacatgtgatcaggtattctgaaagatt
tataagtacagaggacaaggagatatggaaaagagaaagggagaagtttt
tttgcccttccccacttaaggatcttttcgcttttcctcttagatagctt
tcataggtacttttgacacttagtaaaactcataacacttctttgagtgt
ccaattttcttcttgtgattctgactgcaggctaaagtagagaccagcag
tttctctgaaatagagcaaaggccaactgcttaatcctcagctgttagct
acagtttaacaccgaaacctcagcttctcctagaaagagcaaggaaggtt

gaattcctgtgccacatggtcttgttgtcagctcagggagagaattctct
gttgtaatcgcagcagatgctccagcgaccgctgtgtcagtttctcctcc
cagcattcctattatgtgtcagtcacagtattcatcatcattccataatt
ctagaattttctgtgtggtttcttcctctgtcttagttctctattctgtg
ggatgaataattcttatgtgctgcaaactgaacggattaggaattgaact
aacttgggccacaggactaaaaactgacagatgggacacaggtatagaaa
agctggactaggtgggctatgcattctgatgagactcaccagtggcttgt
acaccattgagtgagaggtaggtttactgcaaacagcagaacaaggaggg
catagattagctaacttttgtcaggtagacactaaaagactaagtgttcc
tcaagggactttattacctattctaagaacataatgtttttgtagttgtg
tgtgttatattttatgcagaattacgaccttgttgtttttatctgggagt
taagcatgacaggagaagtgattaggtctcacattgacaatggatcaata
tatagtggttttcttttctgcagcaggtgcccattaagacaggaagaaaa
caaccccaaataggaaagtccttgaaactgaccagattcactaggccctc
ccttcctaagaatgtctaacactaaagactaccaaccagagacccaggag
gtgagaaactctcgggactcaaagggagggactttagataaaatgcccta
cagtagggagagggaacttatagagtcccacctccagcaggagacagggc
atcaaatggagggaggggtgccatcccacagtcacaattctgacccataa
ttgtttctgtctgaggaattacaggatgaaatgagaagagcctgagaaag
atgtccattgacaggccaagtgggatcaggtcaagggaggtccaaagctg
actatactgaagttattggagcctacaaaagggactatcatcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_174908410_174909527
seq2: B6Ng01-049O13.b_49_1148 (reverse)

seq1  AACCTTCCTTGCTCTTTCTGAGGGTAGAAGACTGAGGGCTTCGGTGATTA  50
      ||||||||||||||||||| |||  ||||| |||| || ||||||| | |
seq2  AACCTTCCTTGCTCTTTCT-AGG--AGAAG-CTGA-GGTTTCGGTGTTAA  45

seq1  ACACCTGTAGCCTAACAGCTGAGGATTAAGCAGTGTGGCCTTTGCTCTAT  100
      |   |||||| ||||||||||||||||||||||| |||||||||||||||
seq2  A---CTGTAG-CTAACAGCTGAGGATTAAGCAGT-TGGCCTTTGCTCTAT  90

seq1  CTCAGAAGGAACTGCTGGTCTCTAACTTTTAGCCTGCAGGTCAGAAATCA  150
       |||| || |||||||||||||||   ||||||||||| ||||| |||||
seq2  TTCAG-AGAAACTGCTGGTCTCTA--CTTTAGCCTGCA-GTCAG-AATCA  135

seq1  CAGGAAGAAAATGGGACACTCAAAGAAGTGGTTATGGAGTTTTTACTAAG  200
      || ||||||||| |||||||||||||||| ||||| ||| ||||||||||
seq2  CAAGAAGAAAATTGGACACTCAAAGAAGT-GTTAT-GAG-TTTTACTAAG  182

seq1  TTGTCAAAAGTTACCTATGAAAGCTATCTAAGAGGAAAAGCGAAAAGATC  250
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -TGTCAAAAG-TACCTATGAAAGCTATCTAAGAGGAAAAGCGAAAAGATC  230

seq1  C-TAAGTGGGGAAGGGCAAAAAAACTTCT-CCTTTCTCTTTTCCATATCT  298
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTAAGTGGGGAAGGGCAAAAAAACTTCTCCCTTTCTCTTTTCCATATCT  280

seq1  CCTTGTCCTCTGTACTTATAAATCTTTCAGAATACCTGATCACATGTTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCCTCTGTACTTATAAATCTTTCAGAATACCTGATCACATGTTAC  330

seq1  TGAGTACACTACAAGTTCACACAAAAAATCAAATCATAAATTGAGAGAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACACTACAAGTTCACACAAAAAATCAAATCATAAATTGAGAGAGA  380

seq1  AGTTTACAACAGAGAATGGTTATTAGTAAAACTAGATTGGTGGGTGTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACAACAGAGAATGGTTATTAGTAAAACTAGATTGGTGGGTGTTTA  430

seq1  TTTTGGGCAGGTTAGCTTGAGCCAGTGAGTGATGAATTCCCATTTTATGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGCAGGTTAGCTTGAGCCAGTGAGTGATGAATTCCCATTTTATGA  480

seq1  TCTGTATTATGAGATATGTGCAAACCTTGGTGACATATTTAAGTGATCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTATGAGATATGTGCAAACCTTGGTGACATATTTAAGTGATCTC  530

seq1  AGAAATATAAACACATGCCATTAGCTGTAGCTGTGTGTGTCACATTATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATAAACACATGCCATTAGCTGTAGCTGTGTGTGTCACATTATAG  580

seq1  ATCTCAGTAGTTAACAAAGATCATAGGGGCAAGGTCAAACACTATCTTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTAGTTAACAAAGATCATAGGGGCAAGGTCAAACACTATCTTAT  630

seq1  TATTGCCATTCCTTCTACCAGGAAGGGCATGATCTTTTTCAAATCAGTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCATTCCTTCTACCAGGAAGGGCATGATCTTTTTCAAATCAGTAC  680

seq1  AGTAATATATTTTTTCATTTATTTTTTTCTTTTTAAAAAGTTCATTTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATATTTTTTCATTTATTTTTTTCTTTTTAAAAAGTTCATTTTTG  730

seq1  GTATTAGATTTTAAATTTCATTTTGACTATCCATGGGTGATCTCTTAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGATTTTAAATTTCATTTTGACTATCCATGGGTGATCTCTTAAGT  780

seq1  GTTTCTTTTCTCCAATATTGCCCCAAAATTAAGAATTTCATTCCTGTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTCTCCAATATTGCCCCAAAATTAAGAATTTCATTCCTGTTTT  830

seq1  TAAAGAGATTTCATATCTGTCTGTTTAGAGAAACATCTCCTGTAGCTCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGATTTCATATCTGTCTGTTTAGAGAAACATCTCCTGTAGCTCCT  880

seq1  ACTTTCTTTATGCCATGTAGTTAAGACTTGCTTTGAACTCCTAATCCTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTATGCCATGTAGTTAAGACTTGCTTTGAACTCCTAATCCTCC  930

seq1  CTCTGCTGCCCAGGGCTTGGAAAACAGTCCTACAACTCCTGTCAAGCTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGCCCAGGGCTTGGAAAACAGTCCTACAACTCCTGTCAAGCTGG  980

seq1  GTTCTGACTGATCAGTGAGACAAAAGACACCAGGGAATGAGTGTTGTCTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGACTGATCAGTGAGACAAAAGACACCAGGGAATGAGTGTTGTCTA  1030

seq1  ACCTCCCTGGGTTACAGGGTTACAAATTAGGGGGTTACAAATAAAGAGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTGGGTTACAGGGTTACAAATTAGGGGGTTACAAATAAAGAGGA  1080

seq1  ACAGGTATAAGGTTGAATTC  1118
      ||||||||||||||||||||
seq2  ACAGGTATAAGGTTGAATTC  1100

seq1: chr2_174769372_174770433
seq2: B6Ng01-049O13.g_70_1114

seq1  GAATTCCTGTGCCACATGGTCTTGTTGTCAGCTCAGGGAGAGAATTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGCCACATGGTCTTGTTGTCAGCTCAGGGAGAGAATTCTCT  50

seq1  GTTGTAATCGCAGCAGATGCTCCAGCGACCGCTGTGTCAGTTTCTCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAATCGCAGCAGATGCTCCAGCGACCGCTGTGTCAGTTTCTCCTCC  100

seq1  CAGCATTCCTATTATGTGTCAGTCACAGTATTCATCATCATTCCATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCCTATTATGTGTCAGTCACAGTATTCATCATCATTCCATAATT  150

seq1  CTAGAATTTTCTGTGTGGTTTCTTCCTCTGTCTTAGTTCTCTATTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTTTCTGTGTGGTTTCTTCCTCTGTCTTAGTTCTCTATTCTGTG  200

seq1  GGATGAATAATTCTTATGTGCTGCAAACTGAACGGATTAGGAATTGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATAATTCTTATGTGCTGCAAACTGAACGGATTAGGAATTGAACT  250

seq1  AACTTGGGCCACAGGACTAAAAACTGACAGATGGGACACAGGTATAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGCCACAGGACTAAAAACTGACAGATGGGACACAGGTATAGAAA  300

seq1  AGCTGGACTAGGTGGGCTATGCATTCTGATGAGACTCACCAGTGGCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACTAGGTGGGCTATGCATTCTGATGAGACTCACCAGTGGCTTGT  350

seq1  ACACCATTGAGTGAGAGGTAGGTTTACTGCAAACAGCAGAACAAGGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTGAGTGAGAGGTAGGTTTACTGCAAACAGCAGAACAAGGAGGG  400

seq1  CATAGATTAGCTAACTTTTGTCAGGTAGACACTAAAAGACTAAGTGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTAGCTAACTTTTGTCAGGTAGACACTAAAAGACTAAGTGTTCC  450

seq1  TCAAGGGACTTTATTACCTATTCTAAGAACATAATGTTTTTGTAGTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGACTTTATTACCTATTCTAAGAACATAATGTTTTTGTAGTTGTG  500

seq1  TGTGTTATATTTTATGCAGAATTACGACCTTGTTGTTTTTATCTGGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATATTTTATGCAGAATTACGACCTTGTTGTTTTTATCTGGGAGT  550

seq1  TAAGCATGACAGGAGAAGTGATTAGGTCTCACATTGACAATGGATCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGACAGGAGAAGTGATTAGGTCTCACATTGACAATGGATCAATA  600

seq1  TATAGTGGTTTTCTTTTCTGCAGCAGGTGCCCATTAAGACAGGAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGGTTTTCTTTTCTGCAGCAGGTGCCCATTAAGACAGGAAGAAAA  650

seq1  CAACCCCAAATAGGAAAGTCC-TGAAACTGACCAGATTCACTAGGCCCTC  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAACCCCAAATAGGAAAGTCCTTGAAACTGACCAGATTCACTAGGCCCTC  700

seq1  CCTTCCTAAGAATGTCTAACACTAAAGACTACCAACCAGAGACCCAGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTAAGAATGTCTAACACTAAAGACTACCAACCAGAGACCCAGGAG  750

seq1  GTGAGAAACTCTCGGGACTCAAAGGGAGGGACCTTAGATAAAATGCCCTA  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGAGAAACTCTCGGGACTCAAAGGGAGGGACTTTAGATAAAATGCCCTA  800

seq1  CAGTAGGGAGAGGGAACTTATAGAG-CCCACCTCCAGCAGGAAGACAGGG  848
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  CAGTAGGGAGAGGGAACTTATAGAGTCCCACCTCCAGCAGG-AGACAGGG  849

seq1  CATCAAAT-GAGGGAGGGGTGCCATCCCACAGTCACAACTCTGACCCATA  897
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  CATCAAATGGAGGGAGGGGTGCCATCCCACAGTCACAATTCTGACCCATA  899

seq1  ATTGTTCCTGTCTGAAGGAATTACAGGGATGGAAATGGAGAAGAGCCTGA  947
      |||||| ||||||| |||||||||| |||| ||||| |||||||||||||
seq2  ATTGTTTCTGTCTG-AGGAATTACA-GGAT-GAAAT-GAGAAGAGCCTGA  945

seq1  GGAAAAGAAGGTCCAGTGACAGGCCCAAAGTGGGATCCAGGTCAAGGGGA  997
      |  |||| | ||||| |||||||||  ||||||||| |||||||| ||||
seq2  G--AAAG-ATGTCCATTGACAGGCC--AAGTGGGAT-CAGGTCAA-GGGA  988

seq1  GGTCCCAAAGCCTGACACTATTACTGAGGTTA-TGGAGCACTCACAAAAA  1046
      ||| |||||| |||  |||| |||||| |||| |||||| || || ||||
seq2  GGT-CCAAAG-CTG--ACTA-TACTGAAGTTATTGGAGC-CT-AC-AAAA  1030

seq1  GGGACCTAGCATCACT  1062
      |||| ||| |||||||
seq2  GGGA-CTATCATCACT  1045