BAC Information

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BAC

Clone NameB6Ng01-050D13
Chromosome2 (Build37)
Map Location 131,817,781 - 131,978,531
singlet/doubletdoublet
Overlap geneRassf2, Slc23a2, LOC626513
Upstream geneAtrn, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd
Downstream geneLOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050D13.bB6Ng01-050D13.g
ACCDH874234DH874235
length1,1311,059
definitionDH874234|Mus musculus domesticus DNA, BAC clone: B6Ng01-050D13, 5' end.DH874235|Mus musculus domesticus DNA, BAC clone: B6Ng01-050D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,817,781 - 131,818,953)(131,977,467 - 131,978,531)
sequence
gaattcagatgttagattgaaagccaagctctgggagaccactaagtgag
tgccaccaatgaagtagggccaggttcccacatcctagtttacagttgag
aaaattaagcatagaaataaattcatggacttaacagaatggattcatcc
agcatctgaatgaaccagagtggacctcaggtgacatctagtgccactct
gccaggtcccagctccttctaccatcagaaacagttagtggtttgaatgt
gtcccccaaattcacatgttagaaccttggtccccagtggcagaagggcc
tggagggaactgggccattagaagtctgccgtggtgagtataataacccg
ctcgtgggatcatgggatactgtaggagcagcttaattgtcaacacaagc
tctcaagctcaggggcagtgtgtgcacttggcatgcacagggccaagttc
atccctgccgccaaggagacagaacaaatatgtaaaaccaagctctctcc
actgtgctttttactatggggctccccaaaggccccaccagtcactaact
ccatgctggtagactttacagtctccagtgcttgagctagatataagcct
tcaactctttgtacatttcctgttctctgctactttgttatgtaacacta
aatagactaaaaaaaacattacagctaactctgggcacattcaaacccta
aaccctgggggaaggaaacaggcttgaggtttctcagccttcaccttcca
actgatggcagaagcagagctcccctccaaggctcaaagcagatccacag
gggctcgcttccaaaagtgctttatttaaataaggtctaagatggataca
ttacaaaaaaatataattaaaaataaaaggctacaaaccatggctcccca
tcaggtcccatccaatcatgttagattcctagcacatccgattttcagtc
ataacaacagtagccagtcatgtaccattctacaggcagtatgatgagaa
aaaaaaaaaaaaagactccactcactaagaaaacccgaggaacactagta
ataccccgaaccagcacccgagatcagcacctgggactgaggctcctcaa
gttccagtcagaccttgtgctcagtatggga
gaattcacttaacaaattccctcttagatgtctgtatctctctgtgtcct
aatgattctatttcaggagattgtgtctacctggcttcccagttctctag
gagccgaggaggctgacccctgttctccttccccttcaaagcttaccttc
atggtttggtcaattaccagctggtgcatgggagttctgactgtgtttga
agaatgggcatacagaactgcataaaccaagatatctgccccgggggact
gacatcttctgggagggaaacaaagaaaaccatatatcactcagtaggat
ttcattctagatgctaagaagtgtagagagagtttacttacatcaaccca
gggattcggaaagtatccaagagaaggctaaagtgagatgtaatgaaaga
gaatgttccagaggagtgaggccatcaagatggcttagggcaaaaatgtc
ctctgacctataaaagtaagcccatcatgtgtagctcccacacagaaatt
tttaaaaattaaagaggggagttcaagtgggtcagacagcaaacccaata
acaaaaccccacactctatctatctatctatcgatcgatctatctatcca
tctatcatccttctgtctgtctgtctgtctgtgtgaaacaaagtctatgt
agccctgttttgtcccagaactcactatgtggaccaggctggtctcaaac
tcatagagatctacctttcctctgcctcctgagtgctggaaattaaaata
gtgtaccgccattgcttggttaaaaagggttttgaagccaggactcagac
gtactttctttgctcccaacactggtgttagatgaggaccagacgaatat
gagactggggaagaactctgtagaacactgtaaagtaggcaaagccacag
gaaacgcagctgcaaagcaaatgaggacgagcttcctgacaggacgtagc
atccgctgtgccaaatgcctccagaaagttccagcaagatccccggatgt
gtaatttgagaatgttgctaattttgctaagcagtttcaaggagaccaag
acagggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131817781_131818953
seq2: B6Ng01-050D13.b_44_1174

seq1  GAATTCAGATGTTAGATTGAAAGCCAAGCTCTGGGAGACCACTAAGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGTTAGATTGAAAGCCAAGCTCTGGGAGACCACTAAGTGAG  50

seq1  TGCCACCAATGAAGTAGGGCCAGGTTCCCACATCCTAGTTTACAGTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCAATGAAGTAGGGCCAGGTTCCCACATCCTAGTTTACAGTTGAG  100

seq1  AAAATTAAGCATAGAAATAAATTCATGGACTTAACAGAATGGATTCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAGCATAGAAATAAATTCATGGACTTAACAGAATGGATTCATCC  150

seq1  AGCATCTGAATGAACCAGAGTGGACCTCAGGTGACATCTAGTGCCACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGAATGAACCAGAGTGGACCTCAGGTGACATCTAGTGCCACTCT  200

seq1  GCCAGGTCCCAGCTCCTTCTACCATCAGAAACAGTTAGTGGTTTGAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCCCAGCTCCTTCTACCATCAGAAACAGTTAGTGGTTTGAATGT  250

seq1  GTCCCCCAAATTCACATGTTAGAACCTTGGTCCCCAGTGGCAGAAGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCAAATTCACATGTTAGAACCTTGGTCCCCAGTGGCAGAAGGGCC  300

seq1  TGGAGGGAACTGGGCCATTAGAAGTCTGCCGTGGTGAGTATAATAACCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGAACTGGGCCATTAGAAGTCTGCCGTGGTGAGTATAATAACCCG  350

seq1  CTCGTGGGATCATGGGATACTGTAGGAGCAGCTTAATTGTCAACACAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGGGATCATGGGATACTGTAGGAGCAGCTTAATTGTCAACACAAGC  400

seq1  TCTCAAGCTCAGGGGCAGTGTGTGCACTTGGCATGCACAGGGCCAAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGCTCAGGGGCAGTGTGTGCACTTGGCATGCACAGGGCCAAGTTC  450

seq1  ATCCCTGCCGCCAAGGAGACAGAACAAATATGTAAAACCAAGCTCTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCCGCCAAGGAGACAGAACAAATATGTAAAACCAAGCTCTCTCC  500

seq1  ACTGTGCTTTTTACTATGGGGCTCCCCAAAGGCCCCACCAGTCACTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTTTTTACTATGGGGCTCCCCAAAGGCCCCACCAGTCACTAACT  550

seq1  CCATGCTGGTAGACTTTACAGTCTCCAGTGCTTGAGCTAGATATAAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGGTAGACTTTACAGTCTCCAGTGCTTGAGCTAGATATAAGCCT  600

seq1  TCAACTCTTTGTACATTTCCTGTTCTCTGCTACTTTGTTATGTAACACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTTTGTACATTTCCTGTTCTCTGCTACTTTGTTATGTAACACTA  650

seq1  AATAGACTAAAAAAAACATTACAGCTAACTCTGGGCACATTCAAACCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTAAAAAAAACATTACAGCTAACTCTGGGCACATTCAAACCCTA  700

seq1  AACCCTGGGGGAAGGAAACAGGCTTGAGGTTTCTCAGCCTTCACCTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGGGGAAGGAAACAGGCTTGAGGTTTCTCAGCCTTCACCTTCCA  750

seq1  ACTGATGGCAGAAGCAGAGCTCCCCTCCAAAGGCTCAAAGCAGATCCACA  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTGATGGCAGAAGCAGAGCTCCCCTCC-AAGGCTCAAAGCAGATCCACA  799

seq1  GGGGCTCGCTTCCAAAAGTGCTTTATTTAAATAAGGTCTAAGATGGATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCGCTTCCAAAAGTGCTTTATTTAAATAAGGTCTAAGATGGATAC  849

seq1  ATTACAAAAAAAATAATAATTAAAAAATAAAAGGCTACAAAACCATGGCT  900
      ||||||||||||   |||||| |||||||||||||||| |||||||||||
seq2  ATTACAAAAAAA--TATAATT-AAAAATAAAAGGCTAC-AAACCATGGCT  895

seq1  CCCCATCAAGGTCCCATCCAATCATGTTAAGATTCCTAAGCACATCCGAT  950
      ||||||| |||||||||||||||||||| |||||||| ||||||||||||
seq2  CCCCATC-AGGTCCCATCCAATCATGTT-AGATTCCT-AGCACATCCGAT  942

seq1  TTTCAGTTCATAACCAACAGTTAAGCCAAGTCATGTACCATTCCTAACAG  1000
      |||||| |||||| |||||||  |||| |||||||||||||||   ||||
seq2  TTTCAG-TCATAA-CAACAGT--AGCC-AGTCATGTACCATTC--TACAG  985

seq1  GCAAGTTATGATGAAGAAAAAAAAAAAAAAAAAGACTCCACTCAACTAAG  1050
      || |||    |||| || ||||||||||||||||||||||||| ||||||
seq2  GC-AGT----ATGATGAGAAAAAAAAAAAAAAAGACTCCACTC-ACTAAG  1029

seq1  AAAAAACCCGAAGAAACACTAGTAGTAACCCCAGAACCCAGCAACCCCAG  1100
        |||||||| || |||||||||| ||  ||| ||| ||||| |||| ||
seq2  --AAAACCCG-AGGAACACTAGTAATA--CCCCGAA-CCAGC-ACCCGAG  1072

seq1  AATCCAGCAACCTGGAGACTGAGGCTTCTCCAAAGTTCACAGTTCAAGCA  1150
      |   |||| |||||| |||||||||| |||  |||||| ||| |||   |
seq2  A--TCAGC-ACCTGG-GACTGAGGCTCCTC--AAGTTC-CAG-TCA--GA  1112

seq1  CCTCTGTGCTCAGTTTAATGGGA  1173
      ||| ||||||||||   ||||||
seq2  CCT-TGTGCTCAGT---ATGGGA  1131

seq1: chr2_131977467_131978531
seq2: B6Ng01-050D13.g_69_1127 (reverse)

seq1  TGGCTCCTGTCTCTGGTTCTCCTTTGAAACTGCCTTAGC-AAATTAGCCA  49
      |||| ||||||| ||| ||||| ||||||||| |||||| |||||||| |
seq2  TGGC-CCTGTCT-TGG-TCTCC-TTGAAACTG-CTTAGCAAAATTAGCAA  45

seq1  CATTCTCCAAATTACACAATCCGGGGATCTTTGCTGGAACTTTCTGGAGG  99
      |||||| |||||||||| ||||||||||| ||||||||||||||||||||
seq2  CATTCT-CAAATTACAC-ATCCGGGGATC-TTGCTGGAACTTTCTGGAGG  92

seq1  CATTTGGCACAGCGGATGCTACGTCCTGTCAGGAAGCTCGTCCTCATTTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTTGGCACAGCGGATGCTACGTCCTGTCAGGAAGCTCGTCCTCATTT-  141

seq1  GCTTTGCAGCTGCGTTTCCTGTGGCTTTGCCTACTTTACAGTGTTTCTAC  199
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTTTGCAGCTGCGTTTCCTGTGGCTTTGCCTACTTTACAGTG-TTCTAC  190

seq1  AGAGTTCTTCCCCAGTCTCATATTCGTCTGGTCCTCATCTAACACCAGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTTCCCCAGTCTCATATTCGTCTGGTCCTCATCTAACACCAGTG  240

seq1  TTGGGAGCAAAGAAAGTACGTCTGAGTCCTGGCTTCAAAACCCTTTTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCAAAGAAAGTACGTCTGAGTCCTGGCTTCAAAACCCTTTTTAA  290

seq1  CCAAGCAATGGCGGTACACTATTTTAA-TTCCAGCACTCAGGAGGCAGAG  348
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAAGCAATGGCGGTACACTATTTTAATTTCCAGCACTCAGGAGGCAGAG  340

seq1  G-AAGGTAGATCTCTATGAGTTTGAGACCAGCCTGGTCCACATAGTGAGT  397
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTAGATCTCTATGAGTTTGAGACCAGCCTGGTCCACATAGTGAGT  390

seq1  TCTGGGAC-AAACAGGGCTACATAGACTTTGTTTCACACAGACAGACAGA  446
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACAAAACAGGGCTACATAGACTTTGTTTCACACAGACAGACAGA  440

seq1  CAGACAGAAGGATGATAGATGGATAGATAGATCGATCGATAGATAGATAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAAGGATGATAGATGGATAGATAGATCGATCGATAGATAGATAG  490

seq1  ATAGAGTGTGGGGTTTTGTTATTGGGTTTGCTGTCTGACCCACTTGAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGTGGGGTTTTGTTATTGGGTTTGCTGTCTGACCCACTTGAACT  540

seq1  CCCCTCTTTAATTTTTAAAAATTTCTGTGTGGGAGCTACACATGATGGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTTAATTTTTAAAAATTTCTGTGTGGGAGCTACACATGATGGGC  590

seq1  TTACTTTTATAGGTCAGAGGACATTTTTGCCCTAAGCCATCTTGATGGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTATAGGTCAGAGGACATTTTTGCCCTAAGCCATCTTGATGGCC  640

seq1  TCACTCCTCTGGAACATTCTCTTTCATTACATCTCACTTTAGCCTTCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTCTGGAACATTCTCTTTCATTACATCTCACTTTAGCCTTCTCT  690

seq1  TGGATACTTTCCGAATCCCTGGGTTGATGTAAGTAAACTCTCTCTACACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTTTCCGAATCCCTGGGTTGATGTAAGTAAACTCTCTCTACACT  740

seq1  TCTTAGCATCTAGAATGAAATCCTACTGAGTGATATATGGTTTTCTTTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCATCTAGAATGAAATCCTACTGAGTGATATATGGTTTTCTTTGT  790

seq1  TTCCCTCCCAGAAGATGTCAGTCCCCCGGGGCAGATATCTTGGTTTATGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCAGAAGATGTCAGTCCCCCGGGGCAGATATCTTGGTTTATGC  840

seq1  AGTTCTGTATGCCCATTCTTCAAACACAGTCAGAACTCCCATGCACCAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTATGCCCATTCTTCAAACACAGTCAGAACTCCCATGCACCAGC  890

seq1  TGGTAATTGACCAAACCATGAAGGTAAGCTTTGAAGGGGAAGGAGAACAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTGACCAAACCATGAAGGTAAGCTTTGAAGGGGAAGGAGAACAG  940

seq1  GGGTCAGCCTCCTCGGCTCCTAGAGAACTGGGAAGCCAGGTAGACACAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGCCTCCTCGGCTCCTAGAGAACTGGGAAGCCAGGTAGACACAAT  990

seq1  CTCCTGAAATAGAATCATTAGGACACAGAGAGATACAGACATCTAAGAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAATAGAATCATTAGGACACAGAGAGATACAGACATCTAAGAGG  1040

seq1  GAATTTGTTAAGTGAATTC  1065
      |||||||||||||||||||
seq2  GAATTTGTTAAGTGAATTC  1059