BAC Information

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BAC

Clone NameB6Ng01-050K22
Chromosome2 (Build37)
Map Location 120,821,379 - 121,013,315
singlet/doubletdoublet
Overlap geneTmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e
Upstream geneMapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1
Downstream geneTrp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050K22.bB6Ng01-050K22.g
ACCDH874553DH874554
length9941,106
definitionDH874553|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K22, 5' end.DH874554|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,821,379 - 120,822,380)(121,012,185 - 121,013,315)
sequence
gaattctgagactcaagctctctttttcctccctgtaggactggggtttt
tgggttttttatttttttgtatttgtttgcttgattggttggttgactat
ttatgtatttgtgtttatttatatctgtgtaagagtgtacatgcacagag
gctggaagaaggtgtgtcagatccctcagagctggagctaacaggcattt
gcaggcaaccaagcttgttatatgagtggtaggatccaaaccccagtctt
catgattagattatcttgacagcccattcctggctttttgtatagattct
gaggattaaaattgggtctccgtgcttcagcagcaagcattttaccaact
gaaccatcatctctctggccattttcttatccccctcctcctcctcttcc
tcttcctcctcttcttcctcctcctcctcttcttccccctttttaaatgc
agggtttcactgcctctgcatcccaagagctgggattacaggtgtgcacc
atctcacctggcttcctcttgctcttcacttctccatttttctcttctcc
tcactgtctaaggccagcactgcttctaggctgttcagctccttagccct
gcctccttcagattcagccttcaggtttagtgtgggaagacaagacaggt
cttcaagcccaggaagcctttgttgttgacagactgtacataggtatata
atcagaaccacacacacatttacgcgtggctgcaatttgcttcctggctg
tgtttctaactagattctgctggaagaagtaggactgctcaccacatatt
ttctgcccaagaggatgctcatctcacatttgatcctttggcatcattta
tcctccttactgaccactacattgtggtgagtaaattcaattaaatgtac
ttgtgtgtgtgtttgtttgtttctgtcttactggattttggaatgcaaac
ttctaatgttatagtatgtgtcagaaatctaaccctattaaaaa
gaattccagatggttgtgagccattttgtaggtgttggaaatcaaatcca
ggtccactgggagagcaagccactgctcttaactgataagccatctctcg
agtcctttttataaaaacaaaaacaaaacaaaaaaacagaagaaaaaaaa
aaaaccccaaaaagctaaatgggattgctgcctatgcaaagctggcctgg
agttggcagtcatcttcctgctatgctatagttttcccagtgctacactg
atggggtgtgtaccagaaagcctagattttctttttctttttttataagt
catgaactaatggagagttttagccaatgctttttctgcatctccaggta
cccagatgttacatttatatataatttttctaaatgtgtaagttagtatg
ttttaaattaagggggaaaagctggttctaactagtttattaatcttaat
aaaagcctaacaagactaaataatgagaaaaactggggctggcaagatgg
ctcagtgatgaaaaaccttgctaagcaagcataaggacccaagttcagat
ctccagcatctatgtgaaagctgagcagtggctcgtgcctaacccaatgc
tggcagacagggaggcagggagtgctggggctccctggccagccaggcca
gcccaaacagtgagctcttggttcagaaagatgctgtcctaacagtaagg
taggagagtgaaaacagaagatttctgaaactaatctccacaggcacgca
cgcactcacacaacacacacacacctacctaccttgtaacataagtacat
acactacacacccagacacacaattatttattatttattctttttttttt
tttttcctagacagggtttctctgtagccctggctgttgtctgtaaacaa
agctggcctcaaatgcagagatccacttgctctgcctgccctatgctact
actgacaggccacaatcatgttaaaaaaaaaacttaagtaatcaaacaaa
acaaatctattttagataagcagtatttaaaattaagtcactgaaatagt
caagtggcaagctcagagtatcaacctgtacaagaagaagctatggcaac
ttagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120821379_120822380
seq2: B6Ng01-050K22.b_41_1034

seq1  GAATTCTGAGACTCAAGCTCTCTTTTTCCTCCCTGTAGGACTGGGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGACTCAAGCTCTCTTTTTCCTCCCTGTAGGACTGGGGTTTT  50

seq1  TGGGTTTTTTATTTTTTTGTATTTGTTTGCTTGATTGGTTGGTTGACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTTTATTTTTTTGTATTTGTTTGCTTGATTGGTTGGTTGACTAT  100

seq1  TTATGTATTTGTGTTTATTTATATCTGTGTAAGAGTGTACATGCACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATTTGTGTTTATTTATATCTGTGTAAGAGTGTACATGCACAGAG  150

seq1  GCTGGAAGAAGGTGTGTCAGATCCCTCAGAGCTGGAGCTAACAGGCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGAAGGTGTGTCAGATCCCTCAGAGCTGGAGCTAACAGGCATTT  200

seq1  GCAGGCAACCAAGCTTGTTATATGAGTGGTAGGATCCAAACCCCAGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAACCAAGCTTGTTATATGAGTGGTAGGATCCAAACCCCAGTCTT  250

seq1  CATGATTAGATTATCTTGACAGCCCATTCCTGGCTTTTTGTATAGATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTAGATTATCTTGACAGCCCATTCCTGGCTTTTTGTATAGATTCT  300

seq1  GAGGATTAAAATTGGGTCTCCGTGCTTCAGCAGCAAGCATTTTACCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTAAAATTGGGTCTCCGTGCTTCAGCAGCAAGCATTTTACCAACT  350

seq1  GAACCATCATCTCTCTGGCCATTTTCTTATCCCCCTCCTCCTCCTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCATCTCTCTGGCCATTTTCTTATCCCCCTCCTCCTCCTCTTCC  400

seq1  TCTTCCTCCTCTTCTTCCTCCTCCTCCTCTTCTTCCCCCTTTTTAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCTCTTCTTCCTCCTCCTCCTCTTCTTCCCCCTTTTTAAATGC  450

seq1  AGGGTTTCACTGCCTCTGCATCCCAAGAGCTGGGATTACAGGTGTGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCACTGCCTCTGCATCCCAAGAGCTGGGATTACAGGTGTGCACC  500

seq1  ATCTCACCTGGCTTCCTCTTGCTCTTCACTTCTCCATTTTTCTCTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCTGGCTTCCTCTTGCTCTTCACTTCTCCATTTTTCTCTTCTCC  550

seq1  TCACTGTCTAAGGCCAGCACTGCTTCTAGGCTGTTCAGCTCCTTAGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTAAGGCCAGCACTGCTTCTAGGCTGTTCAGCTCCTTAGCCCT  600

seq1  GCCTCCTTCAGATTCAGCCTTCAGGTTTAGTGTGGGAAGACAAGACAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTCAGATTCAGCCTTCAGGTTTAGTGTGGGAAGACAAGACAGGT  650

seq1  CTTCAAGCCCAGGAAGCCTTTGTTGTTGACAGACTGTACATAGGTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGCCCAGGAAGCCTTTGTTGTTGACAGACTGTACATAGGTATATA  700

seq1  ATCAGAACCACACACACATTTACGCGTGGCTGCAATTTGCTTCCTGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACCACACACACATTTACGCGTGGCTGCAATTTGCTTCCTGGCTG  750

seq1  TGTTTCTAACTAGGATTCTGCTGGAAGAAGTAGGACTGCTCACCACATAT  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAACTA-GATTCTGCTGGAAGAAGTAGGACTGCTCACCACATAT  799

seq1  TTTCTGCCCAAGAGGATGCTCATCTCACATTTGATCCTTTGGCATCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCCAAGAGGATGCTCATCTCACATTTGATCCTTTGGCATCATTT  849

seq1  ATCCTCCTTACTGACCACTACATTGTGGTGAGTAAATTCAATTAAATGTT  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCCTCCTTACTGACCACTACATTGTGGTGAGTAAATTCAATTAAATG-T  898

seq1  ACTTGTGTGTGTGTTTGTTTGTTTCTGTTCTTACTGGATTTTGTGAATGC  950
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  ACTTGTGTGTGTGTTTGTTTGTTTCTG-TCTTACTGGATTTTG-GAATGC  946

seq1  AAACTTCTAAGTGTTATAGTTATGTGTCAGGAAATCTAAACCTTATTAAA  1000
      |||||||||| |||||||| ||||||||| ||||||| |||| |||||||
seq2  AAACTTCTAA-TGTTATAG-TATGTGTCA-GAAATCT-AACCCTATTAAA  992

seq1  AA  1002
      ||
seq2  AA  994

seq1: chr2_121012185_121013315
seq2: B6Ng01-050K22.g_69_1174 (reverse)

seq1  AACTAAGTTGCCATAAAGCTTCTTCTTGTAACAGTTTTGATGACTCTGTA  50
      ||||||||||||||  ||||||||||||| ||||  ||||| |||||| |
seq2  AACTAAGTTGCCAT--AGCTTCTTCTTGT-ACAG-GTTGAT-ACTCTG-A  44

seq1  GCTTTGCAACTTGACTATTTCAGGTGGACTTAAATTTTTAAAATACTTGC  100
      || |||| |||||||||||||||   |||||||   ||| |||||| |||
seq2  GC-TTGCCACTTGACTATTTCAG--TGACTTAA---TTTTAAATAC-TGC  87

seq1  TTATCTATAAATAGGTTTTGTTTTGTTTTGTTTACTTAAGTTTTGTCTTT  150
      ||||||| ||||| | ||||||||| |||| ||||||||||||  | |||
seq2  TTATCTA-AAATA-GATTTGTTTTG-TTTGATTACTTAAGTTT--TTTTT  132

seq1  TAAACATGATTTTGTGGCCTGTCAGTAGTAGCATAGGGCAGGCAGAGGCA  200
      | |||||||  ||||||||||||||||||||||||||||||||||| |||
seq2  TTAACATGA--TTGTGGCCTGTCAGTAGTAGCATAGGGCAGGCAGA-GCA  179

seq1  AGTGGATCTCTGCATTTGAGGCCAGCTTGGTTTACAGGACAACAGCCAGG  250
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  AGTGGATCTCTGCATTTGAGGCCAGCTTTGTTTACA-GACAACAGCCAGG  228

seq1  GCTACAGAGAAACCCTGTCTAGGAAAAAAAAAAAAAAAAGAATAAATAAA  300
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  GCTACAGAGAAACCCTGTCTAGG-AAAAAAAAAAAAAAAGAATAAAT-AA  276

seq1  TAAATAAATTGTGTGTCTGGGTGTGTAGTGTATGTACTTATGTTACAAGG  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAT-AATTGTGTGTCTGGGTGTGTAGTGTATGTACTTATGTTACAAGG  325

seq1  TAGGTAGGTGTGTGTGTGTTGTGTGAGTGCGTGCGTGCCTGTGGAGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGGTGTGTGTGTGTTGTGTGAGTGCGTGCGTGCCTGTGGAGATTA  375

seq1  GTTTCAGAAATCTTCTGTTTTCACTCTCCTACCTTACTGTTAGGACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAAATCTTCTGTTTTCACTCTCCTACCTTACTGTTAGGACAGCA  425

seq1  TCTTTCTGAACCAAGAGCTCACTGTTTGGGCTGGCCTGGCTGGCCAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGAACCAAGAGCTCACTGTTTGGGCTGGCCTGGCTGGCCAGGGA  475

seq1  GCCCCAGCACTCCCTGCCTCCCTGTCTGCCAGCATTGGGTTAGGCACGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCACTCCCTGCCTCCCTGTCTGCCAGCATTGGGTTAGGCACGAG  525

seq1  CCACTGCTCAGCTTTCACATAGATGCTGGAGATCTGAACTTGGGTCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTCAGCTTTCACATAGATGCTGGAGATCTGAACTTGGGTCCTTA  575

seq1  TGCTTGCTTAGCAAGGTTTTTCATCACTGAGCCATCTTGCCAGCCCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTAGCAAGGTTTTTCATCACTGAGCCATCTTGCCAGCCCCAGT  625

seq1  TTTTCTCATTATTTAGTCTTGTTAGGCTTTTATTAAGATTAATAAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATTATTTAGTCTTGTTAGGCTTTTATTAAGATTAATAAACTAG  675

seq1  TTAGAACCAGCTTTTCCCCCTTAATTTAAAACATACTAACTTACACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCAGCTTTTCCCCCTTAATTTAAAACATACTAACTTACACATTT  725

seq1  AGAAAAATTATATATAAATGTAACATCTGGGTACCTGGAGATGCAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTATATATAAATGTAACATCTGGGTACCTGGAGATGCAGAAAA  775

seq1  AGCATTGGCTAAAACTCTCCATTAGTTCATGACTTATAAAAAAAGAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGGCTAAAACTCTCCATTAGTTCATGACTTATAAAAAAAGAAAAA  825

seq1  GAAAATCTAGGCTTTCTGGTACACACCCCATCAGTGTAGCACTGGGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTAGGCTTTCTGGTACACACCCCATCAGTGTAGCACTGGGAAAA  875

seq1  CTATAGCATAGCAGGAAGATGACTGCCAACTCCAGGCCAGCTTTGCATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCATAGCAGGAAGATGACTGCCAACTCCAGGCCAGCTTTGCATAG  925

seq1  GCAGCAATCCCATTTAGCTTTTTGGGGTTTTTTTTTTTTCTTCTGTTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATCCCATTTAGCTTTTTGGGGTTTTTTTTTTTTCTTCTGTTTTT  975

seq1  TTGTTTTGTTTTTGTTTTTATAAAAAGGACTCGAGAGATGGCTTATCAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTGTTTTTATAAAAAGGACTCGAGAGATGGCTTATCAGT  1025

seq1  TAAGAGCAGTGGCTTGCTCTCCCAGTGGACCTGGATTTGATTTCCAACAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAGTGGCTTGCTCTCCCAGTGGACCTGGATTTGATTTCCAACAC  1075

seq1  CTACAAAATGGCTCACAACCATCTGGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  CTACAAAATGGCTCACAACCATCTGGAATTC  1106