BAC Information

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BAC

Clone NameB6Ng01-050L18
Chromosome2 (Build37)
Map Location 178,861,280 - 178,988,048
singlet/doubletdoublet
Overlap geneLOC100043168
Upstream genePhactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264
Downstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050L18.bB6Ng01-050L18.g
ACCDH874590DH874591
length9391,143
definitionDH874590|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L18, 5' end.DH874591|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,861,280 - 178,861,961)(178,986,896 - 178,988,048)
sequence
gaattcaatattgtctgtaggtaaccagtgtgattctatcttaggtagaa
cattccctaaggacatagctgaagaaggtcttgcttcaatgctgatacgg
gctgctgacttatggaaaagacattcctaaaggtgggaatggcatttgac
aatcaatgtttcagaattctctgtagagggcggcggtcctacattgacat
ctaagagcattctcagacctcccctgggagcagatttcatctcaggacac
aaatctctgcccttcataaaagtggcccaccctgctcaagtcctgccatg
gacttcagtgaatcagataaagcacagggccaacctctacctccagcttc
tagttacctgcttcttccaagcccctgtttgtcttgctatttcaaacacc
ttccttggatcacaggtgttctcagtggcttctaggccagaaaatccttc
ctgggaagtttgtctgtttatttttcctcgctctatcagagagtgctcag
agatagtcctacaaggagtaagttcttcaatcatgaggtttaggcaccaa
aaactgcttgcttccagagacagtggcccaggtagcaggtaggaaagtgt
cccaggatagcttcaggtgtagcaggaaatggcctcaattcccttgtaca
tgtccaccaagctctcttgtgagcaggtccgctgctaatggattctgatg
ctgaggaataggaacgaaacattgctttcccttagcagtggatctcatct
ctagtgtaaagccaggccgtaaacagacagccaggttgagtagaactgtt
attgtcctcaaggtccccttaggaaagtcaactgagtatggactttaacc
tgagcccaccgagtgcaccaacccctaacaaagagccagccggtgctttg
aagtcttaaagctagacattatcttctcccctatatcta
gaattcccaggccttctggggtcccacaagaccattggttgctgtcttca
tttgaccaggggaaagacagaagtcaccaacacactgctgctggtcatag
cctcaatgccttcttatatgaacagcctgggcagatgttttcgcagtatt
ttggggtagtcctaactgccaccctcatgctctgatgccctgccttcatc
cctgcatgctatcccccatgagcagtggacagttctccccatgaagtaga
tagtcctcccccatgagcagtggacagtcctcctccatgagcatgggcag
tcctcctgggtcacttctcacactctcttacctccatttcagggcaggta
ttttttttatgcattgcaaatagtgaattaattattgatcctgctcagga
gcagccataaccaaccgctgagaaaatgcccacacactctcctggagcat
gccactgtttcctgtttgcttttgagaacttgctcagtggttttgatggc
agcgtccctatccgtctgagagaaccatggcaaaatcgcaagccagtgtt
tcagctgagcatttcttttggaacaggcgttctgaacctgagagggtgat
gggacggggaggttctgatgtgtgcagagcaattcagatgaccagatgcg
caggagaggggtgagctggtcttctaggagacagggcattgcccttcatg
tgaagaaagtgcttctctagccaatcacccacaggaagagcgaagccgct
ttctttaagatctgaagcggctgcctgtaattagttccccacttagctca
ataaattcccttgtaagtgtgtaatttatttataaataaatatttccatt
ggagatggcatgattaaaataattcttagagggtttactctataccaatt
attattaaacatatgcatttcactattgtgtgcaaattcccagccctcta
atgagcaagcgcttcctgtttacatttctgatttgttatttccatgaaca
aaatctcgcttgagctcgaaacagtactaaagtgccagttgatctggttg
cgctttcattccagtttggtcagaagtctcagggcctttcaggaaagtcc
ttatgcaaaaaggaagttctatatggtttatttttcgaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178861280_178861961
seq2: B6Ng01-050L18.b_44_725

seq1  GAATTCAATATTGTCTGTAGGTAACCAGTGTGATTCTATCTTAGGTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTGTCTGTAGGTAACCAGTGTGATTCTATCTTAGGTAGAA  50

seq1  CATTCCCTAAGGACATAGCTGAAGAAGGTCTTGCTTCAATGCTGATACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTAAGGACATAGCTGAAGAAGGTCTTGCTTCAATGCTGATACGG  100

seq1  GCTGCTGACTTATGGAAAAGACATTCCTAAAGGTGGGAATGGCATTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGACTTATGGAAAAGACATTCCTAAAGGTGGGAATGGCATTTGAC  150

seq1  AATCAATGTTTCAGAATTCTCTGTAGAGGGCGGCGGTCCTACATTGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATGTTTCAGAATTCTCTGTAGAGGGCGGCGGTCCTACATTGACAT  200

seq1  CTAAGAGCATTCTCAGACCTCCCCTGGGAGCAGATTTCATCTCAGGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCATTCTCAGACCTCCCCTGGGAGCAGATTTCATCTCAGGACAC  250

seq1  AAATCTCTGCCCTTCATAAAAGTGGCCCACCCTGCTCAAGTCCTGCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTGCCCTTCATAAAAGTGGCCCACCCTGCTCAAGTCCTGCCATG  300

seq1  GACTTCAGTGAATCAGATAAAGCACAGGGCCAACCTCTACCTCCAGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGTGAATCAGATAAAGCACAGGGCCAACCTCTACCTCCAGCTTC  350

seq1  TAGTTACCTGCTTCTTCCAAGCCCCTGTTTGTCTTGCTATTTCAAACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACCTGCTTCTTCCAAGCCCCTGTTTGTCTTGCTATTTCAAACACC  400

seq1  TTCCTTGGATCACAGGTGTTCTCAGTGGCTTCTAGGCCAGAAAATCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGATCACAGGTGTTCTCAGTGGCTTCTAGGCCAGAAAATCCTTC  450

seq1  CTGGGAAGTTTGTCTGTTTATTTTTCCTCGCTCTATCAGAGAGTGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGTTTGTCTGTTTATTTTTCCTCGCTCTATCAGAGAGTGCTCAG  500

seq1  AGATAGTCCTACAAGGAGTAAGTTCTTCAATCATGAGGTTTAGGCACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTCCTACAAGGAGTAAGTTCTTCAATCATGAGGTTTAGGCACCAA  550

seq1  AAACTGCTTGCTTCCAGAGACAGTGGCCCAGGTAGCAGGTAGGAAAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTTGCTTCCAGAGACAGTGGCCCAGGTAGCAGGTAGGAAAGTGT  600

seq1  CCCAGGATAGCTTCAGGTGTAGCAGGAAATGGCCTCAATTCCCTTGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATAGCTTCAGGTGTAGCAGGAAATGGCCTCAATTCCCTTGTACA  650

seq1  TGTCCACCAAGCTCTCTTGTGAGCAGGTCCGC  682
      ||||||||||||||||||||||||||||||||
seq2  TGTCCACCAAGCTCTCTTGTGAGCAGGTCCGC  682

seq1: chr2_178986896_178988048
seq2: B6Ng01-050L18.g_68_1210 (reverse)

seq1  AAAATTCGGAAAAATAAA-CATATATGAACTTTACTGTTATTGCATAAAG  49
      ||||||| |||||||||| |||||| ||||||     || |||||| |||
seq2  AAAATTC-GAAAAATAAACCATATA-GAACTT---CCTTTTTGCAT-AAG  44

seq1  GACATTGCCCTGAAGGGCCCCTGAGGACTTCTGACCCAAACTGGAATGAA  99
      ||| ||  |||||| || |||||| ||||||||| |||||||||||||||
seq2  GACTTT--CCTGAAAGG-CCCTGA-GACTTCTGA-CCAAACTGGAATGAA  89

seq1  AGCGCCAACCAGATC-ACTGGCACCTTTCGTACTGTTTCCGAGCTC-AGC  147
      |||| |||||||||| ||||||| |||| ||||||||| ||||||| |||
seq2  AGCG-CAACCAGATCAACTGGCA-CTTTAGTACTGTTT-CGAGCTCAAGC  136

seq1  GAGATTTTGTTCATGGAAATAAC-AATCAG-AATGTAAACAGGAAGCGGC  195
      ||||||||||||||||||||||| |||||| |||||||||||||||| ||
seq2  GAGATTTTGTTCATGGAAATAACAAATCAGAAATGTAAACAGGAAGC-GC  185

seq1  TTGCTCATTAGAGGGCCTGGGAATTTGCCACACAATAGTGAAATGCATAT  245
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TTGCTCATTAGAGGG-CTGGGAATTTG-CACACAATAGTGAAATGCATAT  233

seq1  GGTTAATAATCATTGGTATAGAGTAAACACTCTAAGAATTATTATAATCA  295
      | |||||||| ||||||||||||||||| |||||||||||||| ||||||
seq2  GTTTAATAATAATTGGTATAGAGTAAACCCTCTAAGAATTATTTTAATCA  283

seq1  TGCCATCTCC-ATGGAAATATTTATTTAT-AATGAATTACACACTTACAA  343
      |||||||||| |||||||||||||||||| ||| ||||||||||||||||
seq2  TGCCATCTCCAATGGAAATATTTATTTATAAATAAATTACACACTTACAA  333

seq1  GGGAATTTATTGAGCTAAGTGGGGAACTAATTACAGGCAGCCGCTTCAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTTATTGAGCTAAGTGGGGAACTAATTACAGGCAGCCGCTTCAGA  383

seq1  TCTTAAAGAAAGCGGCTTCGCTCTTCCTGTGGGTGATTGGCTAGAGAAGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGAAAGCGGCTTCGCTCTTCCTGTGGGTGATTGGCTAGAGAAGC  433

seq1  ACTTTCTTCACATGAAGGGCAATGCCCTGTCTCCTAGAAGACCAGCTCAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTCACATGAAGGGCAATGCCCTGTCTCCTAGAAGACCAGCTCAC  483

seq1  CCCTCTCCTGCGCATCTGGTCATCTGAATTGCTCTGCACACATCAGAACC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCTGCGCATCTGGTCATCTGAATTGCTCTGCACACATCAGAACC  533

seq1  TCCCCGTCCCATCACCCTCTCAGGTTCAGAACGCCTGTTCCAAAAGAAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTCCCATCACCCTCTCAGGTTCAGAACGCCTGTTCCAAAAGAAAT  583

seq1  GCTCAGCTGAAACACTGGCTTGCGATTTTGCCATGGTTCTCTCAGACGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTGAAACACTGGCTTGCGATTTTGCCATGGTTCTCTCAGACGGA  633

seq1  TAGGGACGCTGCCATCAAAACCACTGAGCAAGTTCTCAAAAGCAAACAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACGCTGCCATCAAAACCACTGAGCAAGTTCTCAAAAGCAAACAGG  683

seq1  AAACAGTGGCATGCTCCAGGAGAGTGTGTGGGCATTTTCTCAGCGGTTGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGGCATGCTCCAGGAGAGTGTGTGGGCATTTTCTCAGCGGTTGG  733

seq1  TTATGGCTGCTCCTGAGCAGGATCAATAATTAATTCACTATTTGCAATGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTGCTCCTGAGCAGGATCAATAATTAATTCACTATTTGCAATGC  783

seq1  ATAAAAAAAATACCTGCCCTGAAATGGAGGTAAGAGAGTGTGAGAAGTGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAATACCTGCCCTGAAATGGAGGTAAGAGAGTGTGAGAAGTGA  833

seq1  CCCAGGAGGACTGCCCATGCTCATGGAGGAGGACTGTCCACTGCTCATGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGGACTGCCCATGCTCATGGAGGAGGACTGTCCACTGCTCATGG  883

seq1  GGGAGGACTATCTACTTCATGGGGAGAACTGTCCACTGCTCATGGGGGAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACTATCTACTTCATGGGGAGAACTGTCCACTGCTCATGGGGGAT  933

seq1  AGCATGCAGGGATGAAGGCAGGGCATCAGAGCATGAGGGTGGCAGTTAGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCAGGGATGAAGGCAGGGCATCAGAGCATGAGGGTGGCAGTTAGG  983

seq1  ACTACCCCAAAATACTGCGAAAACATCTGCCCAGGCTGTTCATATAAGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCAAAATACTGCGAAAACATCTGCCCAGGCTGTTCATATAAGAA  1033

seq1  GGCATTGAGGCTATGACCAGCAGCAGTGTGTTGGTGACTTCTGTCTTTCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGAGGCTATGACCAGCAGCAGTGTGTTGGTGACTTCTGTCTTTCC  1083

seq1  CCTGGTCAAATGAAGACAGCAACCAATGGTCTTGTGGGACCCCAGAAGGC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCAAATGAAGACAGCAACCAATGGTCTTGTGGGACCCCAGAAGGC  1133

seq1  CTGGGAATTC  1153
      ||||||||||
seq2  CTGGGAATTC  1143