BAC Information

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BAC

Clone NameB6Ng01-050N16
Chromosome2 (Build37)
Map Location 143,488,343 - 143,610,643
singlet/doubletdoublet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050N16.bB6Ng01-050N16.g
ACCDH874677DH874678
length9371,087
definitionDH874677|Mus musculus domesticus DNA, BAC clone: B6Ng01-050N16, 5' end.DH874678|Mus musculus domesticus DNA, BAC clone: B6Ng01-050N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,609,686 - 143,610,643)(143,488,343 - 143,489,457)
sequence
gaattctttaccatgtgcctcttacactactaaacccaactctgtgccta
tcttccacaggatctaaacatagaggtctatagggatgtagacccacttc
cacttgaccctgccactccatccactctatatcaataccacttcaccctc
tatatcctacctcatgggtggaccagggccttgtggtgacaggaaagtct
ttaccttgttcacgccatcagccatggcctggagtgtgagctctcggggc
ccatcaaccgtcttcccattgtctgtggggccccagcttgcactgtagat
gtcgatcagttgaggcatgtggctgatggaggaggcttcgatgatgtctg
tcataaagggctggtccagcatccggatccctgtgcgcaggtgggacaag
aaacaagactttggcaccctagctctcagaagacatgggggtagagaaaa
gtttgggttctgggaggagctggggaccttcagtgctttcagaacaccat
ggagtctgagggtcaaaaatggttttcagagccgggtggtggtggcgcat
gcctttaattccagcacttgggaggcagaggcaggtggatttctgagttc
gaggccagcctggtctacaaagtgagttccagaacagccagggctacaca
gagaaaccctgtctcgaaaacccctctccccccaaaaagaaagggctcag
atcaccttactcactcctctttagaccggactcatgtctttccttgaggc
acatttattctgtaaacaaaattacttgagttcttaatggggaaagacat
gctgtgcaggtatccctaagtttctagtgggaacctagcctccagcagtg
cacatgatcactgtgatggggagggggggagcaggttctagtgattaggt
gagtggtagagggagcagctgacacttgcaaaagctc
gaattctaattccagggcatccaatgccctcctctggcttccatgagcac
taggtatacacatgatacacgtgtatacacacatacagacaaagtgcaaa
tacacataaaattaaaaaataaatctttagaaaaaaaagagtcagagatc
aactgtgattgcctaccaagtagctgtgataggttctacaacatatggaa
aaagctttgggctctcaagtttgagggaaggttccttgtctactacgtgc
tgggactattctaaatctgcatttttctctctcactgaacttcatagtca
ttcaatacagctgtgcatccaccagccatttccagataacaaactaaaaa
gttgaccaaatctgaaacaacagacacttagttttgactaatgtgtatac
aatttggttatgtttgtggtaggctcagccagcacggttcaaagccacag
gctatgttcaggagcattttcattagtgtatatcctgttagtgaattgca
cacatctcatgacacacaaaaatgccctttactctggactcctaaatagc
agttatagaatcttggtaggaaagggaggattggagcagagaaagaaatg
cctccatggtcatctctagcaaagagccaagtgggattgaggataaggca
ttgaaagttggccagagggggctcactgatctacccgtcacatacatcta
tttgcacacaggttgctccagtacagtgattcctggtttgtctttcggac
cagcagcaccaaatatggcttaagagattgttaggattttgttagataca
tttctgatagttgaggccctacaatatgagtttcaacatgctttccagaa
aaattcttaccatttttgagagaccctgctaagaagagagggggttgaaa
tacatgcaagatcactactgctgacctgctgaaagtcattgttccatgtg
aactcacattcttgttgcatgactgtgccttggtaatattagaaagtact
gaaaggtatcagctttgtcctcacttggttcttttctttccatgtaaatc
ctctacaaggatctgagaggtaagatcgtctggctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143609686_143610643
seq2: B6Ng01-050N16.b_46_982 (reverse)

seq1  GAGCTTCTTGCTAAGTGTCAGCTGCCTCCCTCTTTCCACACAACTGTATT  50
      |||||| |||| |||||||||||| ||||||| | |||| || |  || |
seq2  GAGCTT-TTGC-AAGTGTCAGCTG-CTCCCTC-TACCACTCACC--TAAT  44

seq1  CACCCTAGAAACCTTGCTTCCCCCCCTCCCCCATCAACAGTGATCAATTG  100
      ||  ||||||  | ||| ||||||||| ||||||| ||||||||||  ||
seq2  CA--CTAGAA--CCTGC-TCCCCCCCT-CCCCATC-ACAGTGATCA--TG  85

seq1  TGCACTGCTGGAGGCTAGGTTCCCACTTAGAAACTTAGGGATAACCTTGC  150
      |||||||||||||||||||||||||| ||||||||||||||||  | |||
seq2  TGCACTGCTGGAGGCTAGGTTCCCAC-TAGAAACTTAGGGATA--CCTGC  132

seq1  ACAGCATGTCTTTCCCCATTAAGAACTCAAGTAATTTTTGTTTACAGAAT  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGCATGTCTTTCCCCATTAAGAACTCAAGTAA-TTTTGTTTACAGAAT  181

seq1  AAATGTGCCTCAAGGAAAGACATGAGTCCGGTCTAAAGAGGAGTGAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCCTCAAGGAAAGACATGAGTCCGGTCTAAAGAGGAGTGAGTAA  231

seq1  GGTGATCTGAGCACCTTTCTTTTTTGGGGGGAGAGGGGTTTTCGAGACAG  300
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  GGTGATCTGAGC-CCTTTC-TTTTTGGGGGGAGAGGGGTTTTCGAGACAG  279

seq1  GGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGG  329

seq1  CTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAA  379

seq1  TTAAAGGCATGCGCCACCACCACCCGGCTCTGAAAACCATTTTTGACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCATGCGCCACCACCACCCGGCTCTGAAAACCATTTTTGACCCT  429

seq1  CAGACTCCATGGTGTTCTGAAAGCACTGAAGGTCCCCAGCTCCTCCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCATGGTGTTCTGAAAGCACTGAAGGTCCCCAGCTCCTCCCAGA  479

seq1  ACCCAAACTTTTCTCTACCCCCATGTCTTCTGAGAGCTAGGGTGCCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACTTTTCTCTACCCCCATGTCTTCTGAGAGCTAGGGTGCCAAAG  529

seq1  TCTTGTTTCTTGTCCCACCTGCGCACAGGGATCCGGATGCTGGACCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTCTTGTCCCACCTGCGCACAGGGATCCGGATGCTGGACCAGCC  579

seq1  CTTTATGACAGACATCATCGAAGCCTCCTCCATCAGCCACATGCCTCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGACAGACATCATCGAAGCCTCCTCCATCAGCCACATGCCTCAAC  629

seq1  TGATCGACATCTACAGTGCAAGCTGGGGCCCCACAGACAATGGGAAGACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCGACATCTACAGTGCAAGCTGGGGCCCCACAGACAATGGGAAGACG  679

seq1  GTTGATGGGCCCCGAGAGCTCACACTCCAGGCCATGGCTGATGGCGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGGCCCCGAGAGCTCACACTCCAGGCCATGGCTGATGGCGTGAA  729

seq1  CAAGGTAAAGACTTTCCTGTCACCACAAGGCCCTGGTCCACCCATGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAAAGACTTTCCTGTCACCACAAGGCCCTGGTCCACCCATGAGGT  779

seq1  AGGATATAGAGGGTGAAGTGGTATTGATATAGAGTGGATGGAGTGGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATAGAGGGTGAAGTGGTATTGATATAGAGTGGATGGAGTGGCAGG  829

seq1  GTCAAGTGGAAGTGGGTCTACATCCCTATAGACCTCTATGTTTAGATCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTGGAAGTGGGTCTACATCCCTATAGACCTCTATGTTTAGATCCT  879

seq1  GTGGAAGATAGGCACAGAGTTGGGTTTAGTAGTGTAAGAGGCACATGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGATAGGCACAGAGTTGGGTTTAGTAGTGTAAGAGGCACATGGTA  929

seq1  AAGAATTC  958
      ||||||||
seq2  AAGAATTC  937

seq1: chr2_143488343_143489457
seq2: B6Ng01-050N16.g_67_1153

seq1  GAATTCTAATTCCAGGGCATCCAATGCCCTCCTCTGGCTTCCATGAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTCCAGGGCATCCAATGCCCTCCTCTGGCTTCCATGAGCAC  50

seq1  TAGGTATACACATGATACACGTGTATACACACATACAGACAAAGTGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATACACATGATACACGTGTATACACACATACAGACAAAGTGCAAA  100

seq1  TACACATAAAATTAAAAAATAAATCTTTAGAAAAAAAAGAGTCAGAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAAAATTAAAAAATAAATCTTTAGAAAAAAAAGAGTCAGAGATC  150

seq1  AACTGTGATTGCCTACCAAGTAGCTGTGATAGGTTCTACAACATATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGATTGCCTACCAAGTAGCTGTGATAGGTTCTACAACATATGGAA  200

seq1  AAAGCTTTGGGCTCTCAAGTTTGAGGGAAGGTTCCTTGTCTACTACGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTGGGCTCTCAAGTTTGAGGGAAGGTTCCTTGTCTACTACGTGC  250

seq1  TGGGACTATTCTAAATCTGCATTTTTCTCTCTCACTGAACTTCATAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTATTCTAAATCTGCATTTTTCTCTCTCACTGAACTTCATAGTCA  300

seq1  TTCAATACAGCTGTGCATCCACCAGCCATTTCCAGATAACAAACTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACAGCTGTGCATCCACCAGCCATTTCCAGATAACAAACTAAAAA  350

seq1  GTTGACCAAATCTGAAACAACAGACACTTAGTTTTGACTAATGTGTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCAAATCTGAAACAACAGACACTTAGTTTTGACTAATGTGTATAC  400

seq1  AATTTGGTTATGTTTGTGGTAGGCTCAGCCAGCACGGTTCAAAGCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTTATGTTTGTGGTAGGCTCAGCCAGCACGGTTCAAAGCCACAG  450

seq1  GCTATGTTCAGGAGCATTTTCATTAGTGTATATCCTGTTAGTGAATTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTTCAGGAGCATTTTCATTAGTGTATATCCTGTTAGTGAATTGCA  500

seq1  CACATCTCATGACACACAAAAATGCCCTTTACTCTGGACTCCTAAATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCATGACACACAAAAATGCCCTTTACTCTGGACTCCTAAATAGC  550

seq1  AGTTATAGAATCTTGGTAGGAAAGGGAGGATTGGAGCAGAGAAAGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGAATCTTGGTAGGAAAGGGAGGATTGGAGCAGAGAAAGAAATG  600

seq1  CCTCCATGGTCATCTCTAGCAAAGAGCCAAGTGGGATTGAGGATAAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGGTCATCTCTAGCAAAGAGCCAAGTGGGATTGAGGATAAGGCA  650

seq1  TTGAAAGTTGGCCAGAGGGGGCTCACTGATCTACCCGTCACATACATCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTTGGCCAGAGGGGGCTCACTGATCTACCCGTCACATACATCTA  700

seq1  TTTGCACACAGGTTGCTCCAGTACAGTGATTCCTGGTTTGGTCTTCCGGA  750
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TTTGCACACAGGTTGCTCCAGTACAGTGATTCCTGGTTT-GTCTTTCGGA  749

seq1  CCAGCAGCACC-AATATGGCTTAGGAGATTGTTAGGATTTTGTTAGATAC  799
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  CCAGCAGCACCAAATATGGCTTAAGAGATTGTTAGGATTTTGTTAGATAC  799

seq1  ATTTCTGATAG-TGAGGCCCTACAATATGAGTTTCAACATGC-TTCCAG-  846
      ||||||||||| |||||||||||||||||||||||||||||| |||||| 
seq2  ATTTCTGATAGTTGAGGCCCTACAATATGAGTTTCAACATGCTTTCCAGA  849

seq1  AAAATTCTTACCA-TTTTGAGAGACCCTGCT-AGAAGAGAGGGGGTTGGA  894
      ||||||||||||| ||||||||||||||||| ||||||||||||||| ||
seq2  AAAATTCTTACCATTTTTGAGAGACCCTGCTAAGAAGAGAGGGGGTT-GA  898

seq1  GATACATGCAAGATTCACTACTGCTGACCTGCTGAAAGGTCAATTGTTTC  944
       |||||||||||| ||||||||||||||||||||||| ||| ||||||  
seq2  AATACATGCAAGA-TCACTACTGCTGACCTGCTGAAA-GTC-ATTGTT--  943

seq1  CCATGGTGACATCCACATTCTTGGTTGCATGACCTGTGCCTTTGTTATAT  994
      |||| |||| |  ||||||||| ||||||||| ||||||||| || ||||
seq2  CCAT-GTGA-ACTCACATTCTT-GTTGCATGA-CTGTGCCTTGGTAATAT  989

seq1  ATTATGTAGAGTAGCTGAAAAGGTCATCAGCTTAGTCCTCATCTTGGTTT  1044
          |  | |||| ||| |||||| |||||||| ||||||| ||||| ||
seq2  ----TAGAAAGTA-CTG-AAAGGT-ATCAGCTTTGTCCTCA-CTTGG-TT  1030

seq1  CTTTTCCTCTCCAAGTGATAAAATCACTCTAACAAAAGGATCTGAGAGGG  1094
      ||||| || |||| ||    ||||| ||||   | |||||||||||||| 
seq2  CTTTT-CTTTCCATGT----AAATC-CTCT---ACAAGGATCTGAGAGG-  1070

seq1  AAAAAGATCTGCTCTGGCTCA  1115
         ||||||   |||||||||
seq2  --TAAGATC--GTCTGGCTCA  1087