BAC Information

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BAC

Clone NameB6Ng01-050O04
Chromosome2 (Build37)
Map Location 77,093,785 - 77,264,537
singlet/doubletdoublet
Overlap geneLOC623706, LOC667906, Zfp533
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1
Downstream geneBC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050O04.bB6Ng01-050O04.g
ACCDH874699DH874700
length1,1791,099
definitionDH874699|Mus musculus domesticus DNA, BAC clone: B6Ng01-050O04, 5' end.DH874700|Mus musculus domesticus DNA, BAC clone: B6Ng01-050O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,093,785 - 77,095,010)(77,263,404 - 77,264,537)
sequence
gaattccattttgagtacttgaggttcatgtttaaatgacagtgctttaa
gaagagaaagaaacattgtgctgcactcctcttgttacctgaaaacataa
taggtgtacatatattaaatatattcttgcaactgtccaggtcatgttta
ccagctgcagttcttttacttaatgtgtgggtattgtgcatggtgatatt
taatcaagacattaacatgagtagaaggttgctgatttaagataagtttg
agatccactaaagttagttgttgtatgtctgtccttgtggtgccttggaa
gcttcatattttcttgggacatcataagatgtcttagctcttgaagtatg
actttaatgctataggaattttgccattttgctaatactggtatgctcca
tgcatccaccattccactgaaattattgatcccattcatattaatttttg
ttacaaatctaactgatgtggggtcttatgggtatttagatccacatttt
actttcaggctatacattctgttttcatagtttgtccttggtggcccaat
caacatgcctgcccaccttgtatcatgtcttcatcatcttcaaggcccca
gctaacagtaccatcacctactcctttctgtccttcttcaagttcttcca
acaagctaaaattatgagtaactttaactcctgtggagaccgccatcttc
tccagctgccacctgataggtctctagaactttgtacctgcaatacaact
tcaggtcggctactaactttaattaatatagaaaacacaactcatgtttt
tgtagagatgtttctaaggatttccccttaacccttagatataaagattg
gatctagaagaatggaaagttctaggagaaagagatagtacagagacctg
aactactcaaatcatacagaaagtagcacatcatgaaaatcctgagattg
tgacagcagcatcatataagactggacagaagcagctcacaggcacttag
agaacaaagctcaagatgtagtaccactggccagaggatgtcaatagttg
cttaatgttaaatagcttctcatgccaagagtgcattttgaaaatcaacc
tctgagactgagggaagtcgaagatgctgccctctgttctatagggagag
cgccataactgaagtctacagaactcaaa
gaattctactttaaactttaaaatatctgtcatcagttagtggtttccgt
ccctctgtgctgtgtcaaatgtgtagataaggctgagacagatgaggcaa
aagcttaagaagtccatagccacatatcaatttacatacataaaggtttg
cactgggtcccgaccaacccaaccccctccccccaccacccaaacctggt
ctggtgtggagccctctgggcttttaaatttcatttctcacaagactgca
cagggcactgggcgctctgactgactcccattcatttcttactgtttgga
aaatagaaagataaagccaaagaaaatggtctcagaattcctcaaactga
aataccttggtcccatgagtcttacgtagtaactggttagtgtttttctg
aaatgatggtggcttgttgcttgaggtattattggatgaaggaagaagaa
tgactgggcgtgccttcagcacttgcctcaatgcctaatcctctctagta
aaatatgaagtatagaaaggaaaagttacttcctaaagttgcaatcctcc
agtgaccgcaggaagcacaagtctgcctttgggtcactgaggagtgtggg
cactgggagcagagacagaatctggaaaatgggactctgcactttcacag
gttaagatttaagcgagcaattctcaaagtgcttgtccctaaactaaaac
gaaaagggcaacttggggctttaagttgactaaaaactaagctaaaggta
aactgacaggaaaagaggctatcttgtattcattcttgtcccaagtctaa
caaaagctaacaggcaaactcgtggtagtgaccatgacttaagagttcct
gtctcaacatccatcctgagtctgcggctcagagtaaaccaaatagatca
gaatggagttaatgtttcttcttgcttgcccaagcagttacttatcacag
ctatgcatcagtatcccaggagacacttttttttttacactcactccaaa
tctcatgaacaaggctcaatacatctgtcttagtttttttctgaatgcct
cctctgtcattctgcaagcactgtcttctcagacctggctctaatgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77093785_77095010
seq2: B6Ng01-050O04.b_45_1223

seq1  GAATTCCATTTTGAGTACTTGAGGTTCATGTTTAAATGACAGTGCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTGAGTACTTGAGGTTCATGTTTAAATGACAGTGCTTTAA  50

seq1  GAAGAGAAAGAAACATTGTGCTGCACTCCTCTTGTTACCTGAAAACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAGAAACATTGTGCTGCACTCCTCTTGTTACCTGAAAACATAA  100

seq1  TAGGTGTACATATATTAAATATATTCTTGCAACTGTCCAGGTCATGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTACATATATTAAATATATTCTTGCAACTGTCCAGGTCATGTTTA  150

seq1  CCAGCTGCAGTTCTTTTACTTAATGTGTGGGTATTGTGCATGGTGATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCAGTTCTTTTACTTAATGTGTGGGTATTGTGCATGGTGATATT  200

seq1  TAATCAAGACATTAACATGAGTAGAAGGTTGCTGATTTAAGATAAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGACATTAACATGAGTAGAAGGTTGCTGATTTAAGATAAGTTTG  250

seq1  AGATCCACTAAAGTTAGTTGTTGTATGTCTGTCCTTGTGGTGCCTTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACTAAAGTTAGTTGTTGTATGTCTGTCCTTGTGGTGCCTTGGAA  300

seq1  GCTTCATATTTTCTTGGGACATCATAAGATGTCTTAGCTCTTGAAGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATATTTTCTTGGGACATCATAAGATGTCTTAGCTCTTGAAGTATG  350

seq1  ACTTTAATGCTATAGGAATTTTGCCATTTTGCTAATACTGGTATGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATGCTATAGGAATTTTGCCATTTTGCTAATACTGGTATGCTCCA  400

seq1  TGCATCCACCATTCCACTGAAATTATTGATCCCATTCATATTAATTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCACCATTCCACTGAAATTATTGATCCCATTCATATTAATTTTTG  450

seq1  TTACAAATCTAACTGATGTGGGGTCTTATGGGTATTTAGATCCACATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATCTAACTGATGTGGGGTCTTATGGGTATTTAGATCCACATTTT  500

seq1  ACTTTCAGGCTATACATTCTGTTTTCATAGTTTGTCCTTGGTGGCCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGGCTATACATTCTGTTTTCATAGTTTGTCCTTGGTGGCCCAAT  550

seq1  CAACATGCCTGCCCACCTTGTATCATGTCTTCATCATCTTCAAGGCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCCTGCCCACCTTGTATCATGTCTTCATCATCTTCAAGGCCCCA  600

seq1  GCTAACAGTACCATCACCTACTCCTTTCTGTCCTTCTTCAAGTTCTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGTACCATCACCTACTCCTTTCTGTCCTTCTTCAAGTTCTTCCA  650

seq1  ACAAGCTAAAATTATGAGTAACTTTAACTCCTGTGGAGACCGCCATCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTAAAATTATGAGTAACTTTAACTCCTGTGGAGACCGCCATCTTC  700

seq1  TCCAGCTGCCACCTGATAGGTCTCTAGAACTTTGTACCTGCAATACAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGCCACCTGATAGGTCTCTAGAACTTTGTACCTGCAATACAACT  750

seq1  TCAGGTCGGCTACTAACTTTAATTAATATAGAAAACACAACTCATGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCGGCTACTAACTTTAATTAATATAGAAAACACAACTCATGTTTT  800

seq1  TGTAGAGATGTTTCTAAGGATTTCCCCTTAACCCTTAGATAATAAAGATT  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTAGAGATGTTTCTAAGGATTTCCCCTTAACCCTTAGAT-ATAAAGATT  849

seq1  GGATCTAGAAGAATGGAAAGTTTCTAGGAGAAAGAGGATAGTAACAGAAG  900
      |||||||||||||||||||| |||||||||||||| |||||| |||| ||
seq2  GGATCTAGAAGAATGGAAAG-TTCTAGGAGAAAGA-GATAGT-ACAG-AG  895

seq1  ACCTGAAACTAACTCAAAATCATACAGAAAGGTAAGGCCACCATCAATGA  950
      ||||| |||| |||| |||||||||||||| |||  ||   |||| ||||
seq2  ACCTG-AACT-ACTC-AAATCATACAGAAA-GTA--GC--ACATC-ATGA  936

seq1  AAAATCCCTGAAGAATTGTGACAGCCAGCATCATTATTAAGACTGGACAG  1000
      |||   |||||   |||||||||| |||||||||   |||||||||||||
seq2  AAA--TCCTGA--GATTGTGACAG-CAGCATCAT--ATAAGACTGGACAG  979

seq1  AAGCAGGCTCAACAGGGCAAACTTAGGAGAACAAAGCTTCAAAGGTATGT  1050
      ||||| |||| |||||    ||||| ||||||||||| ||||    ||||
seq2  AAGCA-GCTC-ACAGG---CACTTA-GAGAACAAAGC-TCAA---GATGT  1019

seq1  AGGTACCAACTTGGCCAGAGGATGTCAATAGTTGCTTAAATGTTTAAATA  1100
      | ||||||   |||||||||||||||||||||||||| |||| |||||||
seq2  A-GTACCA--CTGGCCAGAGGATGTCAATAGTTGCTT-AATG-TTAAATA  1064

seq1  GCTTCTTACATGCCCAAGAGTGCATTTTGAGACATCAGCATCTGAG-CTG  1149
      ||||||  |||| ||||||||||||||||| | |||| | |||||| |||
seq2  GCTTCT--CATG-CCAAGAGTGCATTTTGA-AAATCAACCTCTGAGACTG  1110

seq1  AGGAGTAGTCGGAGAGTGCTGCCCTCTGTTTCATAAGGAGAGCGCGCAAT  1199
      ||| | ||||| ||| ||||||||||||||  ||| |||||  |||| ||
seq2  AGG-GAAGTCGAAGA-TGCTGCCCTCTGTTCTATAGGGAGA--GCGCCAT  1156

seq1  AGACTGAAGGCCCAAACAGAACCCAAA  1226
      | ||||||| |    ||||||| ||||
seq2  A-ACTGAAGTC---TACAGAACTCAAA  1179

seq1: chr2_77263404_77264537
seq2: B6Ng01-050O04.g_65_1163 (reverse)

seq1  GGACATTTAAAGAAGCCAGGGTCTGAGGGAAGGACAGTGTGCCTTGCAGG  50
      |||||||   || ||||| ||||||||   | |||||||   |||||| |
seq2  GGACATT---AG-AGCCA-GGTCTGAG---AAGACAGTG---CTTGCA-G  38

seq1  AATGGACAGAGGAGGGCAATCAGGAAAAAAAACTAAAGAACCAGATGTAT  100
      ||| ||||||||| |||| ||||  ||||||||| ||||  |||||||||
seq2  AAT-GACAGAGGA-GGCATTCAG--AAAAAAACT-AAGA--CAGATGTAT  81

seq1  TGAGGCTTTGTTCACTGAGGATTTGGAGTGAGTGTAAAAAAAAAAAGTGT  150
      ||| || ||||||| ||| |||||||||||||||| ||||||||||||||
seq2  TGA-GCCTTGTTCA-TGA-GATTTGGAGTGAGTGT-AAAAAAAAAAGTGT  127

seq1  TCTTCCTGGGATAACGTGATGCATAGCTGTGATAAGTTAACTGCCTTGGG  200
         ||||||||||   |||||||||||||||||||| |||||| ||||||
seq2  --CTCCTGGGATA--CTGATGCATAGCTGTGATAAG-TAACTG-CTTGGG  171

seq1  CCAAGCAAGGAAGAAACCATTAACTCCATTCTGATCCTATTTGGTTTTAC  250
       ||||||| ||||||| |||||||||||||||||| |||||||| |||||
seq2  -CAAGCAA-GAAGAAA-CATTAACTCCATTCTGAT-CTATTTGG-TTTAC  216

seq1  TCTGAGCCGCAGACTCAGGATGGATGTTTGAGACAGGAACTCTTAAGTCA  300
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTGAGCCGCAGACTCAGGATGGATG-TTGAGACAGGAACTCTTAAGTCA  265

seq1  TGGTCACTACCACGAGTTTGCCTGTTAGCTTTTGTTAGACTTGGGACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTACCACGAGTTTGCCTGTTAGCTTTTGTTAGACTTGGGACAAG  315

seq1  AATGAATACAAGATAGCCTCTTTTCCTGTCAGTTTACCTTTAGCTTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATACAAGATAGCCTCTTTTCCTGTCAGTTTACCTTTAGCTTAGTT  365

seq1  TTTAGTCAACTTAAAGCCCCAAGTTGCCCTTTTCGTTTTAGTTTAGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCAACTTAAAGCCCCAAGTTGCCCTTTTCGTTTTAGTTTAGGGAC  415

seq1  AAGCACTTTGAGAATTGCTCGCTTAAATCTTAACCTGTGAAAGTGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTTGAGAATTGCTCGCTTAAATCTTAACCTGTGAAAGTGCAGAG  465

seq1  TCCCATTTTCCAGATTCTGTCTCTGCTCCCAGTGCCCACACTCCTCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTTCCAGATTCTGTCTCTGCTCCCAGTGCCCACACTCCTCAGTG  515

seq1  ACCCAAAGGCAGACTTGTGCTTCCTGCGGTCACTGGAGGATTGCAACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGGCAGACTTGTGCTTCCTGCGGTCACTGGAGGATTGCAACTTT  565

seq1  AGGAAGTAACTTTTCCTTTCTATACTTCATATTTTACTAGAGAGGATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAACTTTTCCTTTCTATACTTCATATTTTACTAGAGAGGATTAG  615

seq1  GCATTGAGGCAAGTGCTGAAGGCACGCCCAGTCATTCTTCTTCCTTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAGGCAAGTGCTGAAGGCACGCCCAGTCATTCTTCTTCCTTCATC  665

seq1  CAATAATACCTCAAGCAACAAGCCACCATCATTTCAGAAAAACACTAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATACCTCAAGCAACAAGCCACCATCATTTCAGAAAAACACTAACC  715

seq1  AGTTACTACGTAAGACTCATGGGACCAAGGTATTTCAGTTTGAGGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTACGTAAGACTCATGGGACCAAGGTATTTCAGTTTGAGGAATTC  765

seq1  TGAGACCATTTTCTTTGGCTTTATCTTTCTATTTTCCAAACAGTAAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCATTTTCTTTGGCTTTATCTTTCTATTTTCCAAACAGTAAGAAA  815

seq1  TGAATGGGAGTCAGTCAGAGCGCCCAGTGCCCTGTGCAGTCTTGTGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGAGTCAGTCAGAGCGCCCAGTGCCCTGTGCAGTCTTGTGAGAA  865

seq1  ATGAAATTTAAAAGCCCAGAGGGCTCCACACCAGACCAGGTTTGGGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTAAAAGCCCAGAGGGCTCCACACCAGACCAGGTTTGGGTGGT  915

seq1  GGGGGGAGGGGGTTGGGTTGGTCGGGACCCAGTGCAAACCTTTATGTATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAGGGGGTTGGGTTGGTCGGGACCCAGTGCAAACCTTTATGTATG  965

seq1  TAAATTGATATGTGGCTATGGACTTCTTAAGCTTTTGCCTCATCTGTCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGATATGTGGCTATGGACTTCTTAAGCTTTTGCCTCATCTGTCTC  1015

seq1  AGCCTTATCTACACATTTGACACAGCACAGAGGGACGGAAACCACTAACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATCTACACATTTGACACAGCACAGAGGGACGGAAACCACTAACT  1065

seq1  GATGACAGATATTTTAAAGTTTAAAGTAGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  GATGACAGATATTTTAAAGTTTAAAGTAGAATTC  1099