BAC Information

Click to search

BAC

Clone NameB6Ng01-051A03
Chromosome2 (Build37)
Map Location 56,373,039 - 56,558,664
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051A03.bB6Ng01-051A03.g
ACCDH874778DH874779
length1,1551,046
definitionDH874778|Mus musculus domesticus DNA, BAC clone: B6Ng01-051A03, 5' end.DH874779|Mus musculus domesticus DNA, BAC clone: B6Ng01-051A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,557,504 - 56,558,664)(56,373,039 - 56,374,087)
sequence
gaattcctgctgaagacaaggagaaagaattgtaggagccagaagcaatg
gctttgataccaggagaatactgcatacagaatcaactggcttgggggac
tcacagaaactaaaacaacaaacacaaccctgtattgatcttagctaggt
cctctgcatatatgtaatttgatgtttctgtgagactgccagcaatggac
atttggatgctaaatgtggaaagttgaatttatagatttttttcaagcta
taagtatcatattttgagaatgaagtgaggaaggaattgggacaggggtt
aaaaggtggatattgaaatcagagtttgggatagttgagagctaccatgt
gagtgctgagagccaaaaattgtcctctgaaagtgcaacaagacctccta
actgctgagcccactctcagccccaataacttattttcctaagaattcct
ataggtacaggataactattgtattaatgcaatgagccttatacaataca
ataatttccccataaattaattcccttccccttaagcaatgcttccatat
aaggctactccatataatcctttggagatatacccaagtcatagcaccag
tgtgtacgcaggaaaagaagcaagagatgagtggaaaataaaaaaatggt
cttgatggccaatgatcttcaatgccaggctgcaagtttaaaaatttatc
ttatcaacatctttttgcaaactcattcattaagcaatatttttgaaaat
ccataagacacatttggattagcaaaaatagtaactagaataaataaaat
atcttatcccagaatcaacaattattataacaatatgtacataagttatg
tattttaaaaacttatgtcaagtaggactaccatgcaaattttacaactt
caagttaatattatataataaacttccttctctattaaactttacttaaa
tatttcaatattaggttgtcatattcttcagagtgcttaatcccatttta
tatagcatttctcctttattgcccatcattttctttcttttttttcactt
taaatatgcttagtaaacatcttcactagtacctgaggagaaattcttga
gaaatatgaaagattgtggtttcatcctaaggtggtgctcaattttcaat
gttat
gaattccatttggaaggaagattcccttcattaggaagtcatcatcaaag
aatgggggctctctttatcttggaagtggtccctgtatgcctgtttaaaa
caatgcttgagaaagtgtctcaaataagaagtgaaatattaattctacat
ttccacactagaggagggagtaggtgaatatcactgctccacagatgaat
gacccaactacaatattgacaaaccatccacagacactaccttccttcct
cattaattatcatatagttatttttaatgggcacatatttaagggaggaa
aaaagactgcgtgtgcagttttgcatgtattttcattaccacagcggcac
tctgttaaactaaagtgatgctctagtacacaaaacctatcagatttagc
tgcaaaatagtgggtaactttatttttagttctttgagggcatctgaatt
ttgagggttaccagctcagactgaaggcagagctgagagttttggaggat
tggctgtttcatcataacacaagacagggctcccaagtgagaggatgatc
aatacaaggatggtggtaatgctcttgacaagggctagaaaataagcttc
tgtcataatcaagcaaatgatacatagctcaactccatcaaaataaaagt
aatggtcggcaagattggaaaggtgctttgccacctcatatggtgacctg
aattctgtgtccagaatccacatggtaaaaggagagatccaactcctgca
agctgtcctcacatgtacacacatgaaataaatacataagtaatttttta
atgttctatagaaaataagagtagaaggtagtactgtgcttccagagacg
tgagcatgagtgattactgggaaacctcaagaaaactataaccatgtaat
accgaatgtcctgtagtaaaacaaagataagtaagattaggttcaattct
tctggaagaaaagaaagagaaagggaggggttatttatgaagcttgaatg
actgtatgcactttagcaaattgcactttgaatattttatgactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56557504_56558664
seq2: B6Ng01-051A03.b_42_1196 (reverse)

seq1  ATAACATTGAAAAATGAGCACACACTTAGGATGAAAACCAACAATCTTTC  50
      ||||||||||||| |||||||   ||||||||||||  | ||||||||||
seq2  ATAACATTGAAAATTGAGCACCACCTTAGGATGAAA--CCACAATCTTTC  48

seq1  ATTTATTCTCA--GATATCTCCTTCAGGTTACTAGTGAAAGATGTTTACT  98
      || | ||||||   || ||||| ||||| |||||||| ||||||||||||
seq2  ATAT-TTCTCAAGAATTTCTCC-TCAGG-TACTAGTG-AAGATGTTTACT  94

seq1  ATAGCATTATTTAAAGTG-AAAAAAAGAGAGAACATGAATGTGCAATAAA  147
      | |||| ||||||||||| ||||||||| |||| ||| ||| ||||||||
seq2  A-AGCA-TATTTAAAGTGAAAAAAAAGAAAGAAAATG-ATGGGCAATAAA  141

seq1  -GAGAAATGGCTATATACATTGGGATTAAGCACTCTGAAGAATATGACAA  196
       ||||||| |||||||| | ||||||||||||||||||||||||||||||
seq2  GGAGAAAT-GCTATATAAAATGGGATTAAGCACTCTGAAGAATATGACAA  190

seq1  CCTAATATGGAAATATTTAAGTAAAGTTTAATAGAGAAGGAAGTTTATTA  246
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATTGAAATATTTAAGTAAAGTTTAATAGAGAAGGAAGTTTATTA  240

seq1  TATAATATTAACTTGAAGTTGTAAAATTTGCATGGTAGTCCTACTTGACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTAACTTGAAGTTGTAAAATTTGCATGGTAGTCCTACTTGACA  290

seq1  TAAGTTTTTAAAATACATAACTTATGTACATATTGTTATAATAATTGTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTTAAAATACATAACTTATGTACATATTGTTATAATAATTGTTG  340

seq1  ATTCTGGGATAAGATATTTTATTTATTCTAGTTACTATTTTTGCTAATCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGATAAGATATTTTATTTATTCTAGTTACTATTTTTGCTAATCC  390

seq1  AAATGTGTCTTATGGATTTTCAAAAATATTGCTTAATGAATGAGTTTGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTCTTATGGATTTTCAAAAATATTGCTTAATGAATGAGTTTGCA  440

seq1  AAAAGATGTTGATAAGATAAATTTTTAAACTTGCAGCCTGGCATTGAAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTTGATAAGATAAATTTTTAAACTTGCAGCCTGGCATTGAAGA  490

seq1  TCATTGGCCATCAAGACCATTTTTTTATTTTCCACTCATCTCTTGCTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCCATCAAGACCATTTTTTTATTTTCCACTCATCTCTTGCTTCT  540

seq1  TTTCCTGCGTACACACTGGTGCTATGACTTGGGTATATCTCCAAAGGATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCGTACACACTGGTGCTATGACTTGGGTATATCTCCAAAGGATT  590

seq1  ATATGGAGTAGCCTTATATGGAAGCATTGCTTAAGGGGAAGGGAATTAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGTAGCCTTATATGGAAGCATTGCTTAAGGGGAAGGGAATTAAT  640

seq1  TTATGGGGAAATTATTGTATTGTATAAGGCTCATTGCATTAATACAATAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGAAATTATTGTATTGTATAAGGCTCATTGCATTAATACAATAG  690

seq1  TTATCCTGTACCTATAGGAATTCTTAGGAAAATAAGTTATTGGGGCTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGTACCTATAGGAATTCTTAGGAAAATAAGTTATTGGGGCTGAG  740

seq1  AGTGGGCTCAGCAGTTAGGAGGTCTTGTTGCACTTTCAGAGGACAATTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCTCAGCAGTTAGGAGGTCTTGTTGCACTTTCAGAGGACAATTTT  790

seq1  TGGCTCTCAGCACTCACATGGTAGCTCTCAACTATCCCAAACTCTGATTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCAGCACTCACATGGTAGCTCTCAACTATCCCAAACTCTGATTT  840

seq1  CAATATCCACCTTTTAACCCCTGTCCCAATTCCTTCCTCACTTCATTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCCACCTTTTAACCCCTGTCCCAATTCCTTCCTCACTTCATTCTC  890

seq1  AAAATATGATACTTATAGCTTGAAAAAAATCTATAAATTCAACTTTCCAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGATACTTATAGCTTGAAAAAAATCTATAAATTCAACTTTCCAC  940

seq1  ATTTAGCATCCAAATGTCCATTGCTGGCAGTCTCACAGAAACATCAAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCATCCAAATGTCCATTGCTGGCAGTCTCACAGAAACATCAAATT  990

seq1  ACATATATGCAGAGGACCTAGCTAAGATCAATACAGGGTTGTGTTTGTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATGCAGAGGACCTAGCTAAGATCAATACAGGGTTGTGTTTGTTG  1040

seq1  TTTTAGTTTCTGTGAGTCCCCCAAGCCAGTTGATTCTGTATGCAGTATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTCTGTGAGTCCCCCAAGCCAGTTGATTCTGTATGCAGTATTC  1090

seq1  TCCTGGTATCAAAGCCATTGCTTCTGGCTCCTACAATTCTTTCTCCTTGT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTATCAAAGCCATTGCTTCTGGCTCCTACAATTCTTTCTCCTTGT  1140

seq1  CTTCAGCAGGAATTC  1161
      |||||||||||||||
seq2  CTTCAGCAGGAATTC  1155

seq1: chr2_56373039_56374087
seq2: B6Ng01-051A03.g_66_1111

seq1  GAATTCCATTTGGAAGGAAGATTCCCTTCATTAGGAAGTCATCATCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTGGAAGGAAGATTCCCTTCATTAGGAAGTCATCATCAAAG  50

seq1  AATGGGGGCTCTCTTTATCTTGGAAGTGGTCCCTGTATGCCTGTTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGCTCTCTTTATCTTGGAAGTGGTCCCTGTATGCCTGTTTAAAA  100

seq1  CAATGCTTGAGAAAGTGTCTCAAATAAGAAGTGAAATATTAATTCTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTGAGAAAGTGTCTCAAATAAGAAGTGAAATATTAATTCTACAT  150

seq1  TTCCACACTAGAGGAGGGAGTAGGTGAATATCACTGCTCCACAGATGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACTAGAGGAGGGAGTAGGTGAATATCACTGCTCCACAGATGAAT  200

seq1  GACCCAACTACAATATTGACAAACCATCCACAGACACTACCTTCCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAACTACAATATTGACAAACCATCCACAGACACTACCTTCCTTCCT  250

seq1  CATTAATTATCATATAGTTATTTTTAATGGGCACATATTTAAGGGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTATCATATAGTTATTTTTAATGGGCACATATTTAAGGGAGGAA  300

seq1  AAAAGACTGCGTGTGCAGTTTTGCATGTATTTTCATTACCACAGCGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGCGTGTGCAGTTTTGCATGTATTTTCATTACCACAGCGGCAC  350

seq1  TCTGTTAAACTAAAGTGATGCTCTAGTACACAAAACCTATCAGATTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAAACTAAAGTGATGCTCTAGTACACAAAACCTATCAGATTTAGC  400

seq1  TGCAAAATAGTGGGTAACTTTATTTTTAGTTCTTTGAGGGCATCTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATAGTGGGTAACTTTATTTTTAGTTCTTTGAGGGCATCTGAATT  450

seq1  TTGAGGGTTACCAGCTCAGACTGAAGGCAGAGCTGAGAGTTTTGGAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTTACCAGCTCAGACTGAAGGCAGAGCTGAGAGTTTTGGAGGAT  500

seq1  TGGCTGTTTCATCATAACACAAGACAGGGCTCCCAAGTGAGAGGATGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTTCATCATAACACAAGACAGGGCTCCCAAGTGAGAGGATGATC  550

seq1  AATACAAGGATGGTGGTAATGCTCTTGACAAGGGCTAGAAAATAAGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGGATGGTGGTAATGCTCTTGACAAGGGCTAGAAAATAAGCTTC  600

seq1  TGTCATAATCAAGCAAATGATACATAGCTCAACTCCATCAAAATAAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAATCAAGCAAATGATACATAGCTCAACTCCATCAAAATAAAAGT  650

seq1  AATGGTCGGCAAGATTGGAAAGGTGCTTTGCCACCTCATATGGTGACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCGGCAAGATTGGAAAGGTGCTTTGCCACCTCATATGGTGACCTG  700

seq1  AATTCTGTGTCCAGAATCCACATGGTAAAAGGAGAGATCCAACTCCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTGTCCAGAATCCACATGGTAAAAGGAGAGATCCAACTCCTGCA  750

seq1  AGCTGTCCTCACATGTACACACATGAAATAAATACATAAGTAATTTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCTCACATGTACACACATGAAATAAATACATAAGTAATTTTTTA  800

seq1  ATGTTCTATAGAAAATAAGAGTAGAAGGTAGTACTGTGCTTCCAGAGACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTATAGAAAATAAGAGTAGAAGGTAGTACTGTGCTTCCAGAGACG  850

seq1  TGAGCATGAGTGATTACTGGGAAACCTCAAGAAAACTATAACCATGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGAGTGATTACTGGGAAACCTCAAGAAAACTATAACCATGTAAT  900

seq1  ACCGAATGTCCTGTAGTAAAACAAAGATAAGTAAGAATAGGTTCAATTCT  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCGAATGTCCTGTAGTAAAACAAAGATAAGTAAGATTAGGTTCAATTCT  950

seq1  TCTGGAAGATAAGAAAGAGAGA-GGAGGGGTTATTTATGAAGCTTGAATG  999
      ||||||||| |||||||||| | |||||||||||||||||||||||||||
seq2  TCTGGAAGAAAAGAAAGAGAAAGGGAGGGGTTATTTATGAAGCTTGAATG  1000

seq1  AACTGTATGCACTTTAGCAAAATTGGCACTTTGAATATTTAATGAACTGC  1049
       ||||||||||||||||||||  | ||||||||||||||| ||| |||||
seq2  -ACTGTATGCACTTTAGCAAA--TTGCACTTTGAATATTTTATG-ACTGC  1046