BAC Information

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BAC

Clone NameB6Ng01-052J11
Chromosome2 (Build37)
Map Location 113,355,295 - 113,498,447
singlet/doubletdoublet
Overlap geneFmn1
Upstream geneAven, Ryr3, 4930563P21Rik
Downstream geneGrem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052J11.bB6Ng01-052J11.g
ACCDH875899DH875900
length1,0711,193
definitionDH875899|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J11, 5' end.DH875900|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,355,295 - 113,356,380)(113,497,243 - 113,498,447)
sequence
gaattcattatttgccttcttatttaggcacccatcataccagtgaatac
agttttgtagaacctatttgtggagtctacacagtggctaatctgctcat
ggtaatctttcctgaggtgtttactgcaaagaaaaggaatctagagaaga
cagtatttttatgaaagagcatgagcctgggagagacaaggagttatata
agactggattccagggcatatctcagcaaggggcttaaaggaggcagaaa
agctatcagaggagtgatccaggctaatttttccatacaggtctgcaagt
aatagttaagtgttggaagagtcttaaggaataaaacatacagatttgtt
tatgagaaaagtcttccaggaatcagagtttgttaaattgatgttgtcta
aaacaaaacataaaacaagcaaataaaaccaggtagatttttaaacattg
tcctgatttaaaaaaaaagaagaagaagaagaagtaggggggagggagag
aaaggcatagtggcatggataaaaacaaagcactaagtcagaaattgaga
gaaacaaggagcccacaaggtgcacaggcgattccagatggcatgagatg
aatttcagagggagaaacaaactgtagtttgccatgaatggactcagatt
cagactcgtggagtctgtggtggttggttaaatttaggcagatatattaa
tctaaaaggtagttggatcacagtctcaaggtagtaatttagaacttgcc
agtagatcattgaatggattttacttgtcatatgatacagaaaacattac
acacagagagtataatgtgaggaaaagaatagcagaaagattcccgatgg
atctaagaatgaaggggaaaggattctggggctgcctggagagaacgggg
aggtaggagaacagtacctgtatgggaggattttgcggtggaatatgatt
cagggaagttcaattatagacacagcttccctcaaccaagtaggacagta
aattcactgaatgcttgctaaattcgttgagttctcttaacatgaagaaa
acaactgtgaatttgaccaca
gaattcagttactgagaggttcagtagatgctaaagacaacatagcattc
actgaaaggccagaaacagtcgatgagaaggaccaaaccccagagagctc
agaagctcctggatcttgatgcagaatatgattcctaaacttataatttt
aggagaatatcttgatggagaataactatccctgccaattgattcaatgt
ccactgcctccttatgcctccccaaaaccctgtctctccttcacaaactc
ccatgctgatcctgcaggtggctgtgcattaattacgtatttgccaacag
ccttacacactgtcccatgtctggatatggcattggcccatcagaaatct
gacttagttagataactattccatgggactcctgaatactcagggtaaca
tgactataagtaaatggcttcctagcccagagccctaaaagatatgaccc
agagtacctaatgccccagacatagtgaaccttacatactatgcattcca
cgcttcacgccatccacaacgttactctgagtccctgtaaagagtcctca
ttttccaaacatcaacactcagcttctaattcacttccttgctgatttcc
atttctggtacaagctatttcctgattgcacctcctctgctcctcaatga
aaacatactaacggcatgcttactgtgaaccatgagtgaaatagaatctc
tccttcaaatacatatttttgtttttgttttctaaaagggccagatggaa
acataaagcaaatgcatagtatttcatgtgaagataaatattaagaagct
atgtaaaatggagaagagagagaaagaaacaattagggttaccagacaag
cttctttctattagcattatgtagggtgctgaactttatatagctattat
atagggtgctgctgtcatgttctgaattcctttactctatcaacatttat
atgttgagcataatttctgatgtgatatcatggggtgggctgtgatgttg
tcaacgctcatgggtggagcttattgccttaattttttcctcttcaccac
atgaagaccaccattaaggaggcgcagccttctgaagaagaacacctcag
accttagggacaccttttcttggatttctagatacacagaaatgttattt
gttataaatatcaagctaaggcttctcttaagtaaacactgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_113355295_113356380
seq2: B6Ng01-052J11.b_46_1116

seq1  GAATTCATTATTTGCCTTCTTATTTAGGCACCCATCATACCAGTGAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTTGCCTTCTTATTTAGGCACCCATCATACCAGTGAATAC  50

seq1  AGTTTTGTAGAACCTATTTGTGGAGTCTACACAGTGGCTAATCTGCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTAGAACCTATTTGTGGAGTCTACACAGTGGCTAATCTGCTCAT  100

seq1  GGTAATCTTTCCTGAGGTGTTTACTGCAAAGAAAAGGAATCTAGAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCTTTCCTGAGGTGTTTACTGCAAAGAAAAGGAATCTAGAGAAGA  150

seq1  CAGTATTTTTATGAAAGAGCATGAGCCTGGGAGAGACAAGGAGTTATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTTTATGAAAGAGCATGAGCCTGGGAGAGACAAGGAGTTATATA  200

seq1  AGACTGGATTCCAGGGCATATCTCAGCAAGGGGCTTAAAGGAGGCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGATTCCAGGGCATATCTCAGCAAGGGGCTTAAAGGAGGCAGAAA  250

seq1  AGCTATCAGAGGAGTGATCCAGGCTAATTTTTCCATACAGGTCTGCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCAGAGGAGTGATCCAGGCTAATTTTTCCATACAGGTCTGCAAGT  300

seq1  AATAGTTAAGTGTTGGAAGAGTCTTAAGGAATAAAACATACAGATTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTAAGTGTTGGAAGAGTCTTAAGGAATAAAACATACAGATTTGTT  350

seq1  TATGAGAAAAGTCTTCCAGGAATCAGAGTTTGTTAAATTGATGTTGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAAAGTCTTCCAGGAATCAGAGTTTGTTAAATTGATGTTGTCTA  400

seq1  AAACAAAACATAAAACAAGCAAATAAAACCAGGTAGATTTTTAAACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACATAAAACAAGCAAATAAAACCAGGTAGATTTTTAAACATTG  450

seq1  TCCTGATTTAAAAAAAAAGAAGAAGAAGAAGAAGTAGGGGGGAGGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTTAAAAAAAAAGAAGAAGAAGAAGAAGTAGGGGGGAGGGAGAG  500

seq1  AAAGGCATAGTGGCATGGATAAAAACAAAGCACTAAGTCAGAAATTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATAGTGGCATGGATAAAAACAAAGCACTAAGTCAGAAATTGAGA  550

seq1  GAAACAAGGAGCCCACAAGGTGCACAGGCGATTCCAGATGGCATGAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGGAGCCCACAAGGTGCACAGGCGATTCCAGATGGCATGAGATG  600

seq1  AATTTCAGAGGGAGAAACAAACTGTAGTTTGCCATGAATGGACTCAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGAGGGAGAAACAAACTGTAGTTTGCCATGAATGGACTCAGATT  650

seq1  CAGACTCGTGGAGTCTGTGGTGGTTGGTTAAATTTAGGCAGATATATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCGTGGAGTCTGTGGTGGTTGGTTAAATTTAGGCAGATATATTAA  700

seq1  TCTAAAAGGTAGTTGGATCACAGTCTCAAGGTAGTAATTTAGAACTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGGTAGTTGGATCACAGTCTCAAGGTAGTAATTTAGAACTTGCC  750

seq1  AGTAGATCATTGAATGGATTTTACTTGTCATATGATACAGAAAACATTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCATTGAATGGATTTTACTTGTCATATGATACAGAAAACATTAC  800

seq1  ACACAGAGAGTATAATGTGAGGAAAAGAATAGCAGAAAGATTCCCGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAGTATAATGTGAGGAAAAGAATAGCAGAAAGATTCCCGATGG  850

seq1  ATCTAAGGAATGAAGGGGAAAGGATTCTGGGGCTGCCTGGAGAGAACGGG  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAA-GAATGAAGGGGAAAGGATTCTGGGGCTGCCTGGAGAGAACGGG  899

seq1  GAGGTAGGAGGAACAGTACCTGTATGGGAGGAATGTGCGGTGGAATTATG  950
      ||||||||| |||||||||||||||||||||| | |||||||||| ||||
seq2  GAGGTAGGA-GAACAGTACCTGTATGGGAGGATTTTGCGGTGGAA-TATG  947

seq1  ATTCCAGGGAAGTTCAATTATAAGACACCAGCTTCCCTCAACACAAGTAG  1000
      ||| ||||||||||||||||| ||||| |||||||||||||| |||||||
seq2  ATT-CAGGGAAGTTCAATTAT-AGACA-CAGCTTCCCTCAAC-CAAGTAG  993

seq1  GACAGGGAAAATCCACTGAAAATGCTGGCTAAATCCCGTGAGTTCTCATA  1050
      ||||  | |||| |||||  |||||| ||||||| |  ||||||||| | 
seq2  GACA--GTAAATTCACTG--AATGCTTGCTAAATTCGTTGAGTTCTCTT-  1038

seq1  GAACAGTAGACAGAAAACAACTGT-AATTTGACCACA  1086
       ||||  |   ||||||||||||| ||||||||||||
seq2  -AACATGA---AGAAAACAACTGTGAATTTGACCACA  1071

seq1: chr2_113497243_113498447
seq2: B6Ng01-052J11.g_67_1259 (reverse)

seq1  ATCAGTTTGGTTTACTTATAAGAGAAGACCTTAGCCTGAGTAATTTATAA  50
      ||||||   |||||||  ||||||||| ||||||| |||   |||||| |
seq2  ATCAGT---GTTTACT--TAAGAGAAG-CCTTAGCTTGA--TATTTAT-A  41

seq1  ACAAATAACATTTCTTGTGATCCCTAGAAAATCCAAGACAAGGTGTCCCT  100
      |||||||||||||| |||| |  |||| |||||||||| |||||||||||
seq2  ACAAATAACATTTC-TGTG-TATCTAG-AAATCCAAGAAAAGGTGTCCCT  88

seq1  AATGTCCTGAGGTTGTCCTTCCTCAG-AGGCTGCGCCTCCTTAATGGTGG  149
      || || |||||| ||| |||| |||| |||||||||||||||||||||||
seq2  AAGGT-CTGAGG-TGTTCTTCTTCAGAAGGCTGCGCCTCCTTAATGGTGG  136

seq1  TC-TCATGTGGTGAAGAGGGACAAATAAGGGCACTAAGCT-CACCCATGA  197
      || |||||||||||||||| | |||| | |||| |||||| |||||||||
seq2  TCTTCATGTGGTGAAGAGGAAAAAATTAAGGCAATAAGCTCCACCCATGA  186

seq1  GCGTTGAACAACATCACAGCCCACCCCATGATATCACATCAGAAATTATG  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTG-ACAACATCACAGCCCACCCCATGATATCACATCAGAAATTATG  235

seq1  CTCAACATATAAATGTTGATAGAGTAAAGGAATTCAGAACATGACAGCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATATAAATGTTGATAGAGTAAAGGAATTCAGAACATGACAGCAG  285

seq1  CACCCTATATAATAGCTATATAAAGTTCAGCACCCTACATAATGCTAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTATATAATAGCTATATAAAGTTCAGCACCCTACATAATGCTAATA  335

seq1  GAAAGAAGCTTGTCTGGTAACCCTAATTGTTTCTTTCTCTCTCTTCTCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGCTTGTCTGGTAACCCTAATTGTTTCTTTCTCTCTCTTCTCCA  385

seq1  TTTTACATAGCTTCTTAATATTTATCTTCACATGAAATACTATGCATTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATAGCTTCTTAATATTTATCTTCACATGAAATACTATGCATTTG  435

seq1  CTTTATGTTTCCATCTGGCCCTTTTAGAAAACAAAAACAAAAATATGTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTTTCCATCTGGCCCTTTTAGAAAACAAAAACAAAAATATGTAT  485

seq1  TTGAAGGAGAGATTCTATTTCACTCATGGTTCACAGTAAGCATGCCGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAGAGATTCTATTTCACTCATGGTTCACAGTAAGCATGCCGTTA  535

seq1  GTATGTTTTCATTGAGGAGCAGAGGAGGTGCAATCAGGAAATAGCTTGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTTCATTGAGGAGCAGAGGAGGTGCAATCAGGAAATAGCTTGTA  585

seq1  CCAGAAATGGAAATCAGCAAGGAAGTGAATTAGAAGCTGAGTGTTGATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGGAAATCAGCAAGGAAGTGAATTAGAAGCTGAGTGTTGATGT  635

seq1  TTGGAAAATGAGGACTCTTTACAGGGACTCAGAGTAACGTTGTGGATGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAATGAGGACTCTTTACAGGGACTCAGAGTAACGTTGTGGATGGC  685

seq1  GTGAAGCGTGGAATGCATAGTATGTAAGGTTCACTATGTCTGGGGCATTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCGTGGAATGCATAGTATGTAAGGTTCACTATGTCTGGGGCATTA  735

seq1  GGTACTCTGGGTCATATCTTTTAGGGCTCTGGGCTAGGAAGCCATTTACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCTGGGTCATATCTTTTAGGGCTCTGGGCTAGGAAGCCATTTACT  785

seq1  TATAGTCATGTTACCCTGAGTATTCAGGAGTCCCATGGAATAGTTATCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCATGTTACCCTGAGTATTCAGGAGTCCCATGGAATAGTTATCTA  835

seq1  ACTAAGTCAGATTTCTGATGGGCCAATGCCATATCCAGACATGGGACAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTCAGATTTCTGATGGGCCAATGCCATATCCAGACATGGGACAGT  885

seq1  GTGTAAGGCTGTTGGCAAATACGTAATTAATGCACAGCCACCTGCAGGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGGCTGTTGGCAAATACGTAATTAATGCACAGCCACCTGCAGGAT  935

seq1  CAGCATGGGAGTTTGTGAAGGAGAGACAGGGTTTTGGGGAGGCATAAGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGGAGTTTGTGAAGGAGAGACAGGGTTTTGGGGAGGCATAAGGA  985

seq1  GGCAGTGGACATTGAATCAATTGGCAGGGATAGTTATTCTCCATCAAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGACATTGAATCAATTGGCAGGGATAGTTATTCTCCATCAAGAT  1035

seq1  ATTCTCCTAAAATTATAAGTTTAGGAATCATATTCTGCATCAAGATCCAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTAAAATTATAAGTTTAGGAATCATATTCTGCATCAAGATCCAG  1085

seq1  GAGCTTCTGAGCTCTCTGGGGTTTGGTCCTTCTCATCGACTGTTTCTGGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCTGAGCTCTCTGGGGTTTGGTCCTTCTCATCGACTGTTTCTGGC  1135

seq1  CTTTCAGTGAATGCTATGTTGTCTTTAGCATCTACTGAACCTCTCAGTAA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTGAATGCTATGTTGTCTTTAGCATCTACTGAACCTCTCAGTAA  1185

seq1  CTGAATTC  1205
      ||||||||
seq2  CTGAATTC  1193