BAC Information

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BAC

Clone NameB6Ng01-053B05
Chromosome2 (Build37)
Map Location 176,684,376 - 176,845,619
singlet/doubletdoublet
Overlap geneLOC626877, LOC100039156, LOC100039166, 6230416C02Rik
Upstream geneLOC100043126, LOC100039017, LOC100039036, LOC100039049, LOC626832, OTTMUSG00000016203, LOC100039060, LOC668030, LOC627914, LOC100039093, LOC668039, LOC100039109, LOC100043381, LOC100043387, LOC100039123
Downstream geneLOC635470, LOC100043403, LOC100039198, LOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053B05.bB6Ng01-053B05.g
ACCDH876232DH876233
length1,061999
definitionDH876232|Mus musculus domesticus DNA, BAC clone: B6Ng01-053B05, 5' end.DH876233|Mus musculus domesticus DNA, BAC clone: B6Ng01-053B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,684,376 - 176,684,999)(176,844,615 - 176,845,619)
sequence
gaattcttgtcttaaagggttaataatctgtgccacatatttctgacata
aggtagggctattagccattccctggggtaaaacccgccattaaaagtgg
ggatttggtcccacgtgatttacaatgggaatggaaaaggcaaaacggac
acaatcttggggatgaagtgggatagaaaagaaacaacctttaatatcta
tgacaattttagaataacctctgggaattgcgataggagatggtaagcct
ggttgaagtgcccccatcggcatcatggtcttatttacagctcggaggtc
ttgtaacagcctccaggctccacttttcttttttatgacaaatatcggtg
tgttccacggggaggtagaaggctcaagatgtgacagtctcaattgttcc
tgcacaaactgtaaggctgcctgaaatttctcttgaggcatagaccactg
atcaatccagacaggatcattggatttccaagatattttaactgcctgga
atgcaggaggagcagtggtctctaaaaaaaaaggtctgcccctaaacctt
ttttatcatttttgggtgtgggcataatgggagaaatccttccatgttca
tctttccctagacccttccctgggaggtaccctgtttttagcatcaattt
ggtgacagtctccttggggctaaacattatcatccccatttgggagagta
tgtctcttccccatagattcacaggaaggccttttaccacaaagggtcga
acagttccagtattgttttctttgtctgaccatgttagtagtttggagct
tagtaaagtgtcctgtgtttggcctatgccttttaaatgagtggcagtgg
gctgtaaaggccaggctgtagccaatgtgttaaggaaattactgtcgcat
ctgccccggtatctaggagcccttgaaactgtttgccctctagaaacaag
tcagcatgggcagtgatcggttatttctgtgccagttgacttttgagatt
ctggggtggatgtcctcgctcttcttcaataggaatggccatagtgggga
tgggtagggct
gaattcccattttaggatctgtattatgtagatttgtgcaatccttgttg
acatatttaattgagctcagaaatgtaaaacacatgccattctctgtagc
tgtgtgtgttagattatagaccttagtagttaacaaagcacttagggaca
aggtcaaacactatctcataaatgcctttccttctaccaagataggcctg
atctttttcaaatcagtatagtgacatatttttcaattatatttatcttt
ttaaaaagccaatatttggtattattttttaaatttttattttctttatg
tataggtgctctgacctcttacttcttcctattctccaatatttcccaga
aatcaataatttaattcctatttttaaagagattacatatctttctgttt
acagcaacatcggtagctcaggctttccttatgccatgtagttaagcctt
gctttgagcacctgagcctaaaaccttccttgctctttctgagggtagaa
gactgagggcttctgtgattaacacctgtagcctaacagctgaggattaa
gcaatgtggcctttgatctatctcagaaggaactgctgatctctaacttt
tagcctgcaggtcagaaatcacaggaagaaaatgggacactcaaagaagt
ggttatggagtttttactaagttgtcaaaagttacctatgaaagctatct
aagaggaaaagcgaaaagatcctaagtggggaagggcaaaaaaacttctc
ctttctcttttccatatctccttgtcctctgtacttataaatctttcaga
atacctgatcacatgttactgagtacactacaagttcacacaaaaaatca
aatcataaattgagagagaagtttacaacagagaatggttattagtaaac
tagattggtgggtgtttattttggcaggttagcttgagccagtgagtgat
gaattcccatttatgatctgtatatgagatagtgcaaaccttggtgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_176684376_176684999
seq2: B6Ng01-053B05.b_497_1107

seq1  ATCAATCCAGACAGGATCATTGGATTTCCAAGATATTTTAACTGCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCCAGACAGGATCATTGGATTTCCAAGATATTTTAACTGCCTGGA  50

seq1  ATGCAGGAGGAGCAGTGGTCTCTAAAAAAAAAGGTCTGCCCCTAAACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGAGGAGCAGTGGTCTCTAAAAAAAAAGGTCTGCCCCTAAACCTT  100

seq1  TTTTATCATTTTTGGGTGTGGGCATAATGGGAGAAATCCTTCCATGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATTTTTGGGTGTGGGCATAATGGGAGAAATCCTTCCATGTTCA  150

seq1  TCTTTCCCTAGACCCTTCCCTGGGAGGTACCCTGTTTTTAGCATCAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCTAGACCCTTCCCTGGGAGGTACCCTGTTTTTAGCATCAATTT  200

seq1  GGTGACAGTCTCCTTGGGGCTAAACATTATCATCCCCATTTGGGAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGTCTCCTTGGGGCTAAACATTATCATCCCCATTTGGGAGAGTA  250

seq1  TGTCTCTTCCCCATAGATTCACAGGAAGGCCTTTTACCACAAAGGGTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCCCCATAGATTCACAGGAAGGCCTTTTACCACAAAGGGTCGA  300

seq1  ACAGTTCCAGTATTGTTTTCTTTGTCTGACCATGTTAGTAGTTTGGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCAGTATTGTTTTCTTTGTCTGACCATGTTAGTAGTTTGGAGCT  350

seq1  TAGTAAAGTGTCCTGTGTTTGGCCTATGCCTTTTAAATGAGTGGCAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGTGTCCTGTGTTTGGCCTATGCCTTTTAAATGAGTGGCAGTGG  400

seq1  GCTGTAAGGGCCAGGCTGTAGGCCAATGTGTTAAGGAAATTACTGTCGCA  450
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  GCTGTAAAGGCCAGGCTGTA-GCCAATGTGTTAAGGAAATTACTGTCGCA  449

seq1  TCTGCCCCGGTATCTAGGAGCCCTTGAAACTGTTTGCCCTCTAGAAACAA  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTGCCCCGGTATCTAGGAGCCCTTGAAACTGTTTGCCCTCTAGAAAC-A  498

seq1  AGTCAGCATGGGCAGTGAATCGGTTATTTTCTGTGCCCAGTAGACTTTTG  550
      ||||||||||||||||| |||||||| |||||||| ||||| ||||||||
seq2  AGTCAGCATGGGCAGTG-ATCGGTTA-TTTCTGTG-CCAGTTGACTTTTG  545

seq1  AGGATCCTGGGGTGGATGGTCCTCGCTCTTCTTTCATATAAGGGAAATGG  600
      | ||| ||||||||||| |||||||||||||||  |||     | |||||
seq2  A-GATTCTGGGGTGGAT-GTCCTCGCTCTTCTTCAATA-----GGAATGG  588

seq1  CCAAATAGT-GGGAGTGGTAGGGCT  624
      ||  ||||| ||||  |||||||||
seq2  CC--ATAGTGGGGATGGGTAGGGCT  611

seq1: chr2_176844615_176845619
seq2: B6Ng01-053B05.g_68_1066 (reverse)

seq1  TGTCACCAAGGTTTGCACATATCTCATAATACAGATCATAAAATGGGAAT  50
      |||||||||||||||||| |||||||| ||||||||||| ||||||||||
seq2  TGTCACCAAGGTTTGCAC-TATCTCAT-ATACAGATCAT-AAATGGGAAT  47

seq1  TCATCACTCACTGGCTCAAGCTAACCTGCCCAAAATAAACACCCACCAAT  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCATCACTCACTGGCTCAAGCTAACCTG-CCAAAATAAACACCCACCAAT  96

seq1  CTAGTTTTACTAATAACCATTCTCTGTTGTAAACTTCTCTCTCAATTTAT  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAG-TTTACTAATAACCATTCTCTGTTGTAAACTTCTCTCTCAATTTAT  145

seq1  GATTTGATTTTTTTGTGTGAACTTGTAGTGTACTCAGTAACATGTGATCA  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGA-TTTTTTGTGTGAACTTGTAGTGTACTCAGTAACATGTGATCA  194

seq1  GGTATTCTGAAAGATTTATAAGTACAGAGGACAAGGAGATATGGAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCTGAAAGATTTATAAGTACAGAGGACAAGGAGATATGGAAAAGA  244

seq1  GAAAGGAGAAGTTTTTTTGCCCTTCCCCACTTAGGATCTTTTCGCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGAAGTTTTTTTGCCCTTCCCCACTTAGGATCTTTTCGCTTTTC  294

seq1  CTCTTAGATAGCTTTCATAGGTAACTTTTGACAACTTAGTAAAAACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGATAGCTTTCATAGGTAACTTTTGACAACTTAGTAAAAACTCCA  344

seq1  TAACCACTTCTTTGAGTGTCCCATTTTCTTCCTGTGATTTCTGACCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTTCTTTGAGTGTCCCATTTTCTTCCTGTGATTTCTGACCTGCA  394

seq1  GGCTAAAAGTTAGAGATCAGCAGTTCCTTCTGAGATAGATCAAAGGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAAGTTAGAGATCAGCAGTTCCTTCTGAGATAGATCAAAGGCCAC  444

seq1  ATTGCTTAATCCTCAGCTGTTAGGCTACAGGTGTTAATCACAGAAGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTAATCCTCAGCTGTTAGGCTACAGGTGTTAATCACAGAAGCCCT  494

seq1  CAGTCTTCTACCCTCAGAAAGAGCAAGGAAGGTTTTAGGCTCAGGTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCTACCCTCAGAAAGAGCAAGGAAGGTTTTAGGCTCAGGTGCTC  544

seq1  AAAGCAAGGCTTAACTACATGGCATAAGGAAAGCCTGAGCTACCGATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGGCTTAACTACATGGCATAAGGAAAGCCTGAGCTACCGATGTT  594

seq1  GCTGTAAACAGAAAGATATGTAATCTCTTTAAAAATAGGAATTAAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAACAGAAAGATATGTAATCTCTTTAAAAATAGGAATTAAATTAT  644

seq1  TGATTTCTGGGAAATATTGGAGAATAGGAAGAAGTAAGAGGTCAGAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTGGGAAATATTGGAGAATAGGAAGAAGTAAGAGGTCAGAGCAC  694

seq1  CTATACATAAAGAAAATAAAAATTTAAAAAATAATACCAAATATTGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATAAAGAAAATAAAAATTTAAAAAATAATACCAAATATTGGCTT  744

seq1  TTTAAAAAGATAAATATAATTGAAAAATATGTCACTATACTGATTTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGATAAATATAATTGAAAAATATGTCACTATACTGATTTGAAA  794

seq1  AAGATCAGGCCTATCTTGGTAGAAGGAAAGGCATTTATGAGATAGTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGGCCTATCTTGGTAGAAGGAAAGGCATTTATGAGATAGTGTTT  844

seq1  GACCTTGTCCCTAAGTGCTTTGTTAACTACTAAGGTCTATAATCTAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTCCCTAAGTGCTTTGTTAACTACTAAGGTCTATAATCTAACAC  894

seq1  ACACAGCTACAGAGAATGGCATGTGTTTTACATTTCTGAGCTCAATTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTACAGAGAATGGCATGTGTTTTACATTTCTGAGCTCAATTAAA  944

seq1  TATGTCAACAAGGATTGCACAAATCTACATAATACAGATCCTAAAATGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAACAAGGATTGCACAAATCTACATAATACAGATCCTAAAATGGG  994

seq1  AATTC  1005
      |||||
seq2  AATTC  999