BAC Information

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BAC

Clone NameB6Ng01-053J19
Chromosome2 (Build37)17 (Build37)
Map Location 142,776,280 - 142,776,81058,176,263 - 58,177,374
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053J19.bB6Ng01-053J19.g
ACCDH876611DH876612
length9581,105
definitionDH876611|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J19, 5' end.DH876612|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,280 - 142,776,810)(58,176,263 - 58,177,374)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttctatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaacgttggagtttca
ttaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattagc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgttaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
ttatccttgagtagagtttttgctatcctaggttttttgttattccagat
gaattttcaaattgctccttctaattcgtttgaagaattgtgttggaatt
ttgatgggggattgcattgaatctgtagattgcttttggcaagatagcca
tttttacaatgttgatcctgccatccatgagcatgggagatctttccctc
ttctgagatcttcttttatttctttcttcaggagactgaagttttacata
cagatctttcacttccttagttagatgtcacgccgagatattttatatat
ttggacta
gaattcaattcccagtaaccacagaaaagccagatgtggtacatgcttgc
aattacattactggagaggcaaagacacaaagatcactcagttagactgg
ccattctgcctagtttatttggcgagttctaaaccagtggaagaccttcc
ttcaaacaaacaaacaaacaagcaaacaaaaattcaaagcaccaacaata
tggaagatcaacactggaaattgacctgcacatgcatgcacacacataca
cacatgcatgcacacatgtgtacatgcacacagaagcacataatacaagt
aaggaaggtaggtaaattacagacatacatggtacaatgctgttcatgtg
gcagttgataatatcaagttatatgttctgtgtactttgggaagagttgg
ttgtgtggagaaatttcactatgcagttgccttgtccaattaaccaagaa
tagaacacaggcatttattattattttagaattagtaattgggcatgaga
ttttactcttcaatccatggggatagagtgtccccccctcccaatattcc
atgacgatctgactctgtagaatcacaaaggtaagaaccacacaggcaga
tgggggatcaaagtgtgtaagaattgtgtggctgggaaactgttgttaag
tattgaacaagaaagatgtcagaaaagcatgcaggatactcaactttaca
acagttcaatgtcttttaatctaatctggaatgttgtgtgatcccagcac
atgcagatgaagaacagtaaaatcctgtcaaagaacactaacagatataa
gtgtcctttgtggcactggtgcagcattcagaggtgaaagctttgagttg
tgtgacagcttatgaagacatgatgagagtccagtgacatacattttata
gctcctttaatttcaggcattttataaataaactaacatgtattacagaa
taatataaagtccactgaaagcatttatttccaattttctacgtttcaag
agtcaacaatcaagcacttagtaaatattctaatgtatgcttcacatatg
ccacaataaaacctaaagagcttgaactagaatttgtttctgcatttatt
tagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776280_142776810
seq2: B6Ng01-053J19.b_472_1001 (reverse)

seq1  TAGTCACAAATAATATAAAATATCTCGGCGTGAC-TCTAACTAAGGAAGT  49
      ||||| ||||| |||||||||||||||||||||| |||||||||||||||
seq2  TAGTC-CAAAT-ATATAAAATATCTCGGCGTGACATCTAACTAAGGAAGT  48

seq1  GAAAGATCTGTATGATAAAAACTTCAAGTCT-CTGAAGAAAGAAATTAAA  98
      ||||||||||||||   |||||||| ||||| |||||||||||||| |||
seq2  GAAAGATCTGTATG--TAAAACTTC-AGTCTCCTGAAGAAAGAAATAAAA  95

seq1  GAAGATCTCAGAAGATGGAAGGATCTCCCATGCTCATGGATTGGCAGGAT  148
      ||||||||||||||| |||| ||||||||||||||||||| |||||||||
seq2  GAAGATCTCAGAAGAGGGAAAGATCTCCCATGCTCATGGA-TGGCAGGAT  144

seq1  CAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATG  194

seq1  CAAT-CCCCATCAAAATTCCAACTCAATTCTTC-AACGAATTAGAAGGAG  246
      |||| |||||||||||||||||| ||||||||| ||||||||||||||||
seq2  CAATCCCCCATCAAAATTCCAACACAATTCTTCAAACGAATTAGAAGGAG  244

seq1  CAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGT  296
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  CAATTTGAAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACT  294

seq1  CTTCTCAAGGAT-AAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAA  345
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTACTCAAGGATAAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAA  344

seq1  AGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGA  394

seq1  GACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCC  444

seq1  ACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGA  495
      ||||||||||||||||||||||||  ||||||||||||||||||||||| 
seq2  ACACACCTATGGTCACTTGATCTTTAACAAGGGAGCTAAAACCATCCAGT  494

seq1  GGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  531
      ||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  530

seq1: chr17_58176263_58177374
seq2: B6Ng01-053J19.g_71_1175

seq1  GAATTCAATTCCCAGTAACCACAGAAAAGCCAGATGTGGTACATGCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGTAACCACAGAAAAGCCAGATGTGGTACATGCTTGC  50

seq1  AATTACATTACTGGAGAGGCAAAGACACAAAGATCACTCAGTTAGACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTACTGGAGAGGCAAAGACACAAAGATCACTCAGTTAGACTGG  100

seq1  CCATTCTGCCTAGTTTATTTGGCGAGTTCTAAACCAGTGGAAGACCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGCCTAGTTTATTTGGCGAGTTCTAAACCAGTGGAAGACCTTCC  150

seq1  TTCAAACAAACAAACAAACAAGCAAACAAAAATTCAAAGCACCAACAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAAACAAACAAACAAGCAAACAAAAATTCAAAGCACCAACAATA  200

seq1  TGGAAGATCAACACTGGAAATTGACCTGCACATGCATGCACACACATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATCAACACTGGAAATTGACCTGCACATGCATGCACACACATACA  250

seq1  CACATGCATGCACACATGTGTACATGCACACAGAAGCACATAATACAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCATGCACACATGTGTACATGCACACAGAAGCACATAATACAAGT  300

seq1  AAGGAAGGTAGGTAAATTACAGACATACATGGTACAATGCTGTTCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTAGGTAAATTACAGACATACATGGTACAATGCTGTTCATGTG  350

seq1  GCAGTTGATAATATCAAGTTATATGTTCTGTGTACTTTGGGAAGAGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGATAATATCAAGTTATATGTTCTGTGTACTTTGGGAAGAGTTGG  400

seq1  TTGTGTGGAGAAATTTCACTATGCAGTTGCCTTGTCCAATTAACCAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGAGAAATTTCACTATGCAGTTGCCTTGTCCAATTAACCAAGAA  450

seq1  TAGAACACAGGCATTTATTATTATTTTAGAATTAGTAATTGGGCATGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACACAGGCATTTATTATTATTTTAGAATTAGTAATTGGGCATGAGA  500

seq1  TTTTACTCTTCAATCCATGGGGATAGAGTGTCCCCCCCTCCCAATATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCTTCAATCCATGGGGATAGAGTGTCCCCCCCTCCCAATATTCC  550

seq1  ATGACGATCTGACTCTGTAGAATCACAAAGGTAAGAACCACACAGGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGATCTGACTCTGTAGAATCACAAAGGTAAGAACCACACAGGCAGA  600

seq1  TGGGGGATCAAAGTGTGTAAGAATTGTGTGGCTGGGAAACTGTTGTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGATCAAAGTGTGTAAGAATTGTGTGGCTGGGAAACTGTTGTTAAG  650

seq1  TATTGAACAAGAAAGATGTCAGAAAAGCATGCAGGATACTCAACTTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACAAGAAAGATGTCAGAAAAGCATGCAGGATACTCAACTTTACA  700

seq1  ACAGTTCAATGTC-TTTAATCTAATCTGGAATGTTGTGTGATCCCAGCAC  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCAATGTCTTTTAATCTAATCTGGAATGTTGTGTGATCCCAGCAC  750

seq1  ATGCAGATGAAGAACAGTAAAATCCTGTCAAAGAACACTAACAGATATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATGAAGAACAGTAAAATCCTGTCAAAGAACACTAACAGATATAA  800

seq1  GTGTCCTTTGTGGCACTGGTGCAGCATTCAGAGGTGAAAGCTTTGAGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTTGTGGCACTGGTGCAGCATTCAGAGGTGAAAGCTTTGAGTTG  850

seq1  TGTGACAGCTTATGAAGACAATGATGAGAGTCCAGTGACCATACATTTTA  899
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TGTGACAGCTTATGAAGAC-ATGATGAGAGTCCAGTGA-CATACATTTTA  898

seq1  TAGCTCCTTTAAATTTCAGGCATTTTATTAAATAAACTAACATGTATTAC  949
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TAGCTCCTTT-AATTTCAGGCATTTTA-TAAATAAACTAACATGTATTAC  946

seq1  AGAATAATTATAAAGTCCACTGAAAGGCATTTATTTCCAATTTTCTACGT  999
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAATAA-TATAAAGTCCACTGAAA-GCATTTATTTCCAATTTTCTACGT  994

seq1  TTCAAGAGTCAACATTCAGGCACTTAAGTAAATATTCATATGTATGCTTC  1049
      |||||||||||||| ||| |||||| |||||||||||  |||||||||||
seq2  TTCAAGAGTCAACAATCAAGCACTT-AGTAAATATTCTAATGTATGCTTC  1043

seq1  ACATATGCCAC-ATAAAA-CTAAAGAGCTTTAAACTAGAATTTTGTTTTC  1097
      ||||||||||| |||||| ||||||||| || |||||||||||   ||||
seq2  ACATATGCCACAATAAAACCTAAAGAGC-TTGAACTAGAATTT--GTTTC  1090

seq1  TGCATTTATTTAGTC  1112
      |||||||||||||||
seq2  TGCATTTATTTAGTC  1105