BAC Information

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BAC

Clone NameB6Ng01-053L05
Chromosome2 (Build37)
Map Location 143,554,653 - 143,555,216
singlet/doubletsinglet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053L05.bB6Ng01-053L05.g
ACCDH876672DH876673
length1,163944
definitionDH876672|Mus musculus domesticus DNA, BAC clone: B6Ng01-053L05, 5' end.DH876673|Mus musculus domesticus DNA, BAC clone: B6Ng01-053L05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcaggaaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaagtacccagagctaaagggatcttcaccctatag
gtggacaacattatgaactaccagtaccctgagctctgacttagctgcat
aatgtatcaaagatggcctatctgccatcacctgcaaaggaaggcccatt
ggactgctacctatatgccccagtcaggaactcattgcccatagtgtatg
ggtgcgctgtgtc
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tctttcaggatctgttgttatgtctcccttttcatttctgattttgttaa
ttaggattttgtccctgtgcccttttagtgagtctagctaagggttatct
atcttgttgatttttctcaaagaaccaactcctcgtttggttaattcttt
gaatagtcttcttgtttccacttgggtgatttcacccctgagttcgatta
tttcctgccgctactcctcttgggtgaatttgctcctttttttcagagct
ttagatgtgttgtcagctgctatatgtgctcctctcccgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143554653_143555216
seq2: B6Ng01-053L05.g_452_1011 (reverse)

seq1  AAAAACGGGAGA-GAGCACATACTAGCAGCTTGACAACACATCTAAAAGC  49
      |||||||||||| ||||||||| ||||||| ||||||||||||| |||||
seq2  AAAAACGGGAGAGGAGCACATA-TAGCAGC-TGACAACACATCT-AAAGC  47

seq1  TCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAA  99
      ||| |||||||||| |||||||||||||||||||||||| ||||||||||
seq2  TCT-GAAAAAAAGG-AGCAAATTCACCCAAGAGGAGTAG-CGGCAGGAAA  94

seq1  TAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATT  149
      ||||| |||||||||||||||||| |||||||||||||||||| ||||||
seq2  TAATCGAACTCAGGGGTGAAATCACCCAAGTGGAAACAAGAAG-ACTATT  143

seq1  CAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAG-AAAATCAACAAGA  198
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAATCAACAAGA  193

seq1  TAGATAAACCCTTAGCTAGACTCACT-AAAGGGCACAGGGACAAAATCCT  247
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGAT-AACCCTTAGCTAGACTCACTAAAAGGGCACAGGGACAAAATCCT  242

seq1  AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTG-AA  296
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAA  292

seq1  GAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAA  342

seq1  ACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTAC  392

seq1  CAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCT  442

seq1  AAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGG  492

seq1  ACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAA  542

seq1  CTCCAGTTCTGCACAAAC  564
      ||||||||||||||||||
seq2  CTCCAGTTCTGCACAAAC  560