BAC Information

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BAC

Clone NameB6Ng01-054F04
Chromosome2 (Build37)
Map Location 177,474,167 - 177,659,360
singlet/doubletdoublet
Overlap geneLOC626802, LOC329575, LOC433515, LOC665205
Upstream geneLOC100043387, LOC100039123, LOC626877, LOC100039156, LOC100039166, 6230416C02Rik, LOC635470, LOC100043403, LOC100039198, LOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233
Downstream geneOTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054F04.bB6Ng01-054F04.g
ACCDH877095DH877096
length3881,165
definitionDH877095|Mus musculus domesticus DNA, BAC clone: B6Ng01-054F04, 5' end.DH877096|Mus musculus domesticus DNA, BAC clone: B6Ng01-054F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,474,167 - 177,474,560)(177,658,174 - 177,659,360)
sequence
cagtcctgacttccttggagatgtagagtagtatgtaatcataagcccaa
taaaccttttccttcaaaacttgcttcttggtcatcatgtttgtgcagga
atagaaaccctgaataagacaatgggtataaggagtggattgtaaaaata
ggttagacaataaagaaataaagaatccaaggaactaaagggaactgcaa
ccctataggtgcaacaacaatatgaactaaccagtaccccggagctcttg
tctctagctgcatatgtatcaaaagatggcctaataggccatcacttgaa
agagaggcccattggacttgcaaactttatatgccacagtacaggggaat
gccagggccaaaaagggggagtgggtgggtaggggagt
gaattcactctgtatacaggcaggcctcgaactcagaaatccacctacct
ctgcctccctagtgctgggattaaaggtgtgtaccaccactgcctggctc
attcttatttttaaagagattttatatatgtctgtttagagaaacatctc
ctgtagctcttactttctttatgccatgtaatcagacttgctttgaactc
ctaatcctccctctgctgcccagggcttggaaaacagtcctacaactcct
gtcaggctgggttctgactgatcagtgagacaaaagacaccagggaatga
gtgttgtctaacctccctgggttacagggttacaaattaggggattacaa
ataaagagggacaggtataaggttgagttcactgaccaactttgaagctg
gtctacttgcagcacagaaaaggaggaggaataaggtaggtgaggccttt
ctgctttggcagtggttgacattcaccgtgaggagtcaagtaatcaattt
tacacaatcagtaaaattccatactggacattttgtggcatttcccagat
tagggcaatgacaaatgagatcatggtccctctctgttacagcatattgc
tggcatacctcaccatcaaccccaggagtagggctgccaatctcccagct
gccattccttatggaatccaaccatttgggaactggcctttttatctatc
attaatcatcctgatctcctggtctaactcttgcttctcccctccttcct
ctctccacaaagttcaaggttatgtctactctataccatcccaaatataa
ctaggtctggctatgttctcacttttgtgtataatatactttctcctcca
ccatacctaggagcaatgctatcctttacttttaatttcatctttgtctt
cccttttctctcccattaactgcttctagctttaaattcatagccacttt
tacttttaaatatgtatgtatgaattttatttcagttcagctgcagactt
tcatattagaaatagagatggctgcacaggacatgcatgcatattgaata
tacaagaaagaccatgggcttttaatataaatacttggtcttccagggac
tgaacttcttgatgacatttttggaataggcttatgtctgcatgtagatg
aacatcaggcttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_177474167_177474560
seq2: B6Ng01-054F04.b_45_438

seq1  GAATTCCAGTCCTGACTTCCTTGGAGATGTAGAGCAGTATGTAATCATAA  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAATTCCAGTCCTGACTTCCTTGGAGATGTAGAGTAGTATGTAATCATAA  50

seq1  GCCCAATAAACCTTTTCCTCCAAAACTTGCTTCTTGGTCATGATGTTTGT  100
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GCCCAATAAACCTTTTCCTTCAAAACTTGCTTCTTGGTCATCATGTTTGT  100

seq1  GCAGGAATAGAAACCCTGAATAAGACAATGGGTATAAGGAGTGGATTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATAGAAACCCTGAATAAGACAATGGGTATAAGGAGTGGATTGTA  150

seq1  AAAATAGGTTAGACAATAAAGAAATAAAGAATCCAAGGAACTAAAGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGTTAGACAATAAAGAAATAAAGAATCCAAGGAACTAAAGGGAA  200

seq1  CTGCAACCCTATAGGTGCAACAACAATATGAACTAACCAGTACCCCGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACCCTATAGGTGCAACAACAATATGAACTAACCAGTACCCCGGAG  250

seq1  CTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAATAGGCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAATAGGCCATCA  300

seq1  CTTGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCACAGTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCACAGTACAG  350

seq1  GGAAATGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGAGAGT  394
      || |||||||||||||||||||||||||||||||||||| ||||
seq2  GGGAATGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGT  394

seq1: chr2_177658174_177659360
seq2: B6Ng01-054F04.g_66_1230 (reverse)

seq1  TCCAAGCTCTGATGTTCCATCCTACATGCAGACATAGCCCTAATCTCAAA  50
      ||||||| |||||||| ||| |||||||||||||||  |||| || ||||
seq2  TCCAAGC-CTGATGTT-CAT-CTACATGCAGACATAAGCCTATTC-CAAA  46

seq1  AATGTACATTTAAAAGAATGTTCTAGTCC--TGCAGACCAAGTATTTCAT  98
      ||||| |||    ||||| |||| |||||   | ||||||||||||| ||
seq2  AATGT-CAT---CAAGAA-GTTC-AGTCCCTGGAAGACCAAGTATTT-AT  89

seq1  ATTTAAAAGGCCCATGGTCCTTTCTTTGTATATTCAATTATGCATGCAAT  148
      |||  ||| ||||||||| ||||| |||||||||||| ||||||||| ||
seq2  ATT--AAAAGCCCATGGT-CTTTC-TTGTATATTCAA-TATGCATGC-AT  133

seq1  GTCCTGTGCAGCCATCTCTATTTCTTAATATGAAAGTCTTGCAGCTGAAC  198
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  GTCCTGTGCAGCCATCTCTATTTC-TAATATGAAAGTC-TGCAGCTGAAC  181

seq1  TGAAATAAAATTCATACATTAACAATAATTTAAAAGTAAAAGTGGCTATG  248
      |||||||||||||||||||  |||   |||||||||||||||||||||||
seq2  TGAAATAAAATTCATACAT--ACA--TATTTAAAAGTAAAAGTGGCTATG  227

seq1  AATTTTAAAGCTAGAAGCAGTTAATGGGAGAGAAAAGGGAAGACAAAGAT  298
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TTTAAAGCTAGAAGCAGTTAATGGGAGAGAAAAGGGAAGACAAAGAT  276

seq1  GAAATTAAAAGTAAAGGATAGCATTGCTCCTAGGTATGGTGGAGGAGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAAGTAAAGGATAGCATTGCTCCTAGGTATGGTGGAGGAGAAA  326

seq1  GTATATTATACACAAAAGTGAGAACATAGCCAGACCTAGTTATATTTGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTATACACAAAAGTGAGAACATAGCCAGACCTAGTTATATTTGGG  376

seq1  ATGGTATAGAGTAGACATAACCTTGAACTTTGTGGAGAGAGGAAGGAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATAGAGTAGACATAACCTTGAACTTTGTGGAGAGAGGAAGGAGGG  426

seq1  GAGAAGCAAGAGTTAGACCAGGAGATCAGGATGATTAATGATAGATAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGAGTTAGACCAGGAGATCAGGATGATTAATGATAGATAAAA  476

seq1  AGGCCAGTTCCCAAATGATTGGATTCCATAAGGAATGGCAGCTGGGAGAT  548
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGCCAGTTCCCAAATGGTTGGATTCCATAAGGAATGGCAGCTGGGAGAT  526

seq1  TGGCAGCCCTACTCCTGGGGTTGATGGTGAGGTATGTCAGCAATATTCTG  598
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TGGCAGCCCTACTCCTGGGGTTGATGGTGAGGTATGCCAGCAATATGCTG  576

seq1  TAACAGAGAGGGACCATGATCTCATTTGTCATTGCCCTAATCTGTGAAAT  648
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAACAGAGAGGGACCATGATCTCATTTGTCATTGCCCTAATCTGGGAAAT  626

seq1  GCCACAAAATGTCCAGTATGGAATTTTACTGATTGTGCAAAATTGATTAC  698
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCACAAAATGTCCAGTATGGAATTTTACTGATTGTGTAAAATTGATTAC  676

seq1  TTGACTCCTCATGGTGAATGTCAACTACTGCCAAAGCAGAAAGGCCTCAC  748
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  TTGACTCCTCACGGTGAATGTCAACCACTGCCAAAGCAGAAAGGCCTCAC  726

seq1  CTACCTTATTCCTCCTCCTTTTCTGTGCTGCAAGTATACCAGCTTCAAAG  798
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTACCTTATTCCTCCTCCTTTTCTGTGCTGCAAGTAGACCAGCTTCAAAG  776

seq1  TTGGTCAGTGAACTCAACCTTATACCTGTCCCTCTTTATTTGTAATTCCC  848
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGGTCAGTGAACTCAACCTTATACCTGTCCCTCTTTATTTGTAATCCCC  826

seq1  TAACTTGTAACCCTGTAACCCAGGGAGGTTAGACAACACTCATTCCCTGG  898
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTAACCCTGTAACCCAGGGAGGTTAGACAACACTCATTCCCTGG  876

seq1  TGTCTTTTGTCTCACTGATCAGTCAGAACCCAGTCTGAAAGCAGTTGTAG  948
      ||||||||||||||||||||||||||||||||| |||| || ||||||||
seq2  TGTCTTTTGTCTCACTGATCAGTCAGAACCCAGCCTGACAGGAGTTGTAG  926

seq1  GACTGTTTTCCAAGCCCTGGGCAGCAGAGGGAGGATTAGGAGTTCAAAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTCCAAGCCCTGGGCAGCAGAGGGAGGATTAGGAGTTCAAAGC  976

seq1  AAGTCTGATTACATGGCATAAAGAAAGTAAGATCTACAGGAGATGTTTCT  1048
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGTCTGATTACATGGCATAAAGAAAGTAAGAGCTACAGGAGATGTTTCT  1026

seq1  CTAAACAGACATATATAAAATCTCTTTAAAAATAAGAATGAGCCGGGCAG  1098
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTAAACAGACATATATAAAATCTCTTTAAAAATAAGAATGAGCCAGGCAG  1076

seq1  TGGTGGTACACACCTTTAATCCCAGCACTAGGGAGGCAGAGGTAGGAGGA  1148
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGTGGTACACACCTTTAATCCCAGCACTAGGGAGGCAGAGGTAGGTGGA  1126

seq1  TTTCTGAGTTCGAGGCCTGCCTGTATACAGAGTGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCGAGGCCTGCCTGTATACAGAGTGAATTC  1165