BAC Information

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BAC

Clone NameB6Ng01-054F11
Chromosome9 (Build37)2 (Build37)
Map Location 88,306,974 - 88,307,86355,338,113 - 55,338,222
singlet/doubletsingletsinglet
Overlap geneSnx14
Upstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, LOC100039601
Downstream geneSyncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054F11.bB6Ng01-054F11.g
ACCDH877109DH877110
length892308
definitionDH877109|Mus musculus domesticus DNA, BAC clone: B6Ng01-054F11, 5' end.DH877110|Mus musculus domesticus DNA, BAC clone: B6Ng01-054F11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,306,974 - 88,307,863)(55,338,113 - 55,338,222)
sequence
gaattctatactttaaatggatgaaagctatgtgtgctatatatcaataa
aaccgttattaaaaatgatggttgttaccatacatttataatctcagccc
tgtagaagctgaggcaggaggactgcaagtttgagaccagcctgggctat
atactaaggtcttctttcaaaacaaggtaagaagacaaaaggaaaaaaag
aacatatgtatgtgcttgtgtatgtaaatattatactgcaagtacaatgt
actactgttgtagaagaatcactaggctagttcaaagcctaacatgttag
ttctactaacactagtaattaaatcatttgaagaataatttatttaaagt
tgttatttaaatgaagtatcattagtcatctcatctctctcttgcccttt
cctcctccctcctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtacactcacaacctatggagtcttatttgtatatatgtacaact
gatcccttacgattggtgtctggactcggataaaaacaaaaagaaaaata
agtgaaaaaggaggaggaggaagaggaggaagaagaagaggaaaaggagg
aggaaaaaagagaagccactgactgcatacagctttttggctaaggttgg
gcccttgtgaactcttcttccacccatgtaggcacggcaactggaaggca
caccagtttttaaatttcactttgctttgcctatttcctcaaaatttgga
atttgtggatattaaccctattttatctttccaatttaacaggttacaga
atagtacagtacctcacttatatttgatgtacacaacacattttcaattg
gtcactggccattttatattttctttgtgaactcaatgaatc
gaattctgtgggactgtatcttatgtattctgtatgttggttttggggtt
tttttgtttttgttttgttggctaatatccacatattagtgagtacatag
agtacacaccatgcatgtccgtctgagtctgggttacctcacacaggatg
atattttctagttccatccatttgcctgcaaaagtcaggatgtcctcatt
cttaatagctgagtagtgttccattgtgtacatgagccacattttctgta
tctattcttctgtcgtgggacatctaggttgtttccagcttctggctatc
acaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88306974_88307863
seq2: B6Ng01-054F11.b_44_935

seq1  GAATTCTATACTTTAAATGGATGAAAGCTATGTGTGCTATATATCAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACTTTAAATGGATGAAAGCTATGTGTGCTATATATCAATAA  50

seq1  AACCGTTATTAAAAATGATGGTTGTTACCATACATTTATAATCTCAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTTATTAAAAATGATGGTTGTTACCATACATTTATAATCTCAGCCC  100

seq1  TGTAGAAGCTGAGGCAGGAGGACTGCAAGTTTGAGACCAGCCTGGGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGCTGAGGCAGGAGGACTGCAAGTTTGAGACCAGCCTGGGCTAT  150

seq1  ATACTAAGGTCTTCTTTCAAAACAAGGTAAGAAGACAAAAGGAAAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGGTCTTCTTTCAAAACAAGGTAAGAAGACAAAAGGAAAAAAAG  200

seq1  AACATATGTATGTGCTTGTGTATGTAAATATTATACTGCAAGTACAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTATGTGCTTGTGTATGTAAATATTATACTGCAAGTACAATGT  250

seq1  ACTACTGTTGTAGAAGAATCACTAGGCTAGTTCAAAGCCTAACATGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTTGTAGAAGAATCACTAGGCTAGTTCAAAGCCTAACATGTTAG  300

seq1  TTCTACTAACACTAGTAATTAAATCATTTGAAGAATAATTTATTTAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTAACACTAGTAATTAAATCATTTGAAGAATAATTTATTTAAAGT  350

seq1  TGTTATTTAAATGAAGTATCATTAGTCATCTCATCTCTCTCTTGCCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTAAATGAAGTATCATTAGTCATCTCATCTCTCTCTTGCCCTTT  400

seq1  CCTCCTCCCTCCTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCTCCTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  450

seq1  TGTGTATACACTCACAACCTATGGAGTCTTATTTGTATATATGTACAACT  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTACACTCACAACCTATGGAGTCTTATTTGTATATATGTACAACT  500

seq1  GATCCCTTACGATTGGTGTCTGGACTCGGATAAAAACAAAAAGAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTACGATTGGTGTCTGGACTCGGATAAAAACAAAAAGAAAAATA  550

seq1  AGTGAAAAAGGAGGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAAAGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAAGGAGGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAAAGGAGG  600

seq1  AGG-AAAAAGAGAAGCCACTGACTGCATACAGC-TTTTGGCTAAGGTTGG  648
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGAAAAAAGAGAAGCCACTGACTGCATACAGCTTTTTGGCTAAGGTTGG  650

seq1  GCCCTTGTGAACTCTTCTTCCACCCATGTAGGCACGGCAACTGGAAGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGTGAACTCTTCTTCCACCCATGTAGGCACGGCAACTGGAAGGCA  700

seq1  CACCAG-TTTTAAATTTCAC-TTGCTTTGCCTATTTCCTCAAAA-TTGGA  745
      |||||| ||||||||||||| ||||||||||||||||||||||| |||||
seq2  CACCAGTTTTTAAATTTCACTTTGCTTTGCCTATTTCCTCAAAATTTGGA  750

seq1  ATTTGTGGATATTAACCCTATTTTATCTTTCCAATTTAACAGGTTACAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGATATTAACCCTATTTTATCTTTCCAATTTAACAGGTTACAGA  800

seq1  ATAGTACAGTACCTCACTTATATTTGATGTACAACAACACATTTTCAATT  845
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATAGTACAGTACCTCACTTATATTTGATGTAC-ACAACACATTTTCAATT  849

seq1  GGTCACTGGCCATTTTATATTTTTCTTTTGTGAACTCAATGAATC  890
      |||||||||||||||||||||||   |||||||||||||||||||
seq2  GGTCACTGGCCATTTTATATTTT--CTTTGTGAACTCAATGAATC  892

seq1: chr2_55338113_55338222
seq2: B6Ng01-054F11.g_263_372

seq1  TTCTTAATAGCTAAGTAGTATTGTATTGTGTAAATGAACCACATTTTCTG  50
      |||||||||||| |||||| ||  |||||||| |||| ||||||||||||
seq2  TTCTTAATAGCTGAGTAGTGTTCCATTGTGTACATGAGCCACATTTTCTG  50

seq1  TATCCATTCTTCTGTCATGAGACATCTAGGTTGTTTCCAACTTCTGGCTA  100
      |||| ||||||||||| || ||||||||||||||||||| ||||||||||
seq2  TATCTATTCTTCTGTCGTGGGACATCTAGGTTGTTTCCAGCTTCTGGCTA  100

seq1  TCACAAATAA  110
      ||||||||||
seq2  TCACAAATAA  110