BAC Information

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BAC

Clone NameB6Ng01-055G14
Chromosome2 (Build37)
Map Location 112,878,439 - 112,879,637
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055G14.bB6Ng01-055G14.g
ACCDH877866DH877867
length1,2401,183
definitionDH877866|Mus musculus domesticus DNA, BAC clone: B6Ng01-055G14, 5' end.DH877867|Mus musculus domesticus DNA, BAC clone: B6Ng01-055G14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaggtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
tagaatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccatggaatagaattgaagat
ccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagc
taaaaccatccagtgggaggaaagacagcatttttcacattggtgctggc
acactggttgttatcgtgtagagaatgcgaatcgatccataacttatctc
ctgtactaggtcaatctagttggatcagacttcacataaacagagacact
gaaacttatgagggaaagtgggggaaaggcttgagaatgggcacaggaaa
atcctgaacgaacgcaatgcttgtctgtagatcggaatccgacaattgga
ctaatggaactcaagttctgcaggcaagatcgctagacaagaccacgatt
gggaggacttctcactgatcgaattggggactatatctcc
gaattccacagcaagtcacaacatagactgtgtaacctcagaggtagcaa
aggccaatggcatacagccatggtacacacacatacacacaaagcccctg
gatctaacatttcctgaatgtcattctttaaaaaggtatgactagggcac
tttaactttataggttcacaccataagtgtgtgtctctactttggttctt
ggtaagcactgtgactttgcaggaaggaaagcatctaattctaactatac
tttgtcactagtcagggacactgataggttgtgtaaggacaggtgctttt
gtgtgctattagagctgtttatttcattggtttcctttactgtcatcact
ggctcctcatttgaagcacggtgtctttcttgggcatactggctttttca
tactacccacccactttctatgaaatcttctgacaatgtttatgctacgt
atagggaatgggctgttgtgtatcctgttttacttctgggaaataataca
gtttctgggatttttctgtttatggtgcttcagagtacttgctgatactt
ttctgttattgtttgaaagaaagaggtcaataaaactaaaatctccaatg
tgtgggacactccacatactgtgtgcataatatttatatcactagtctat
tccccgatgtaaaatctgaaagcagaacaaagcctctgtttctatacaca
attaagagtaatggaacactggctttttcaagatggatactttgatgaag
tttagaagattataatgaatttataggctgacattcagatgggtaaaact
ttgaagataggtttctggcagcaaaagatttgatttcattatttaatgat
acatcaagtcctaaaattatcctgtccagacaagtatctttaaaaattat
ctaatttttccagccacattcagaaattgtcaagtatcacaaccagtgag
aaaaagtctgtacagaaggaaaggaccagcaagaaactcatggagcctct
tcaagcatcatttcagttctaaaagttcccttcaagtagtaccctgatgt
ctatcttaagagaagggcacttggggctgaacttggtatgttaagtgacg
gctaatcggaatggaatttatgctttaatccttcatattttatggagata
catggatggctaagacatggccgtggcacagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_112878439_112879637
seq2: B6Ng01-055G14.g_69_1251

seq1  GAATTCCACAGCAAGTCACAACATAGACTGTGTAACCTCAGAGGTAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCAAGTCACAACATAGACTGTGTAACCTCAGAGGTAGCAA  50

seq1  AGGCCAATGGCATACAGCCATGGTACACACACATACACACAAAGCCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAATGGCATACAGCCATGGTACACACACATACACACAAAGCCCCTG  100

seq1  GATCTAACATTTCCTGAATGTCATTCTTTAAAAAGGTATGACTAGGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAACATTTCCTGAATGTCATTCTTTAAAAAGGTATGACTAGGGCAC  150

seq1  TTTAACTTTATAGGTTCACACCATAAGTGTGTGTCTCTACTTTGGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTTATAGGTTCACACCATAAGTGTGTGTCTCTACTTTGGTTCTT  200

seq1  GGTAAGCACTGTGACTTTGCAGGAAGGAAAGCATCTAATTCTAACTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCACTGTGACTTTGCAGGAAGGAAAGCATCTAATTCTAACTATAC  250

seq1  TTTGTCACTAGTCAGGGACACTGATAGGTTGTGTAAGGACAGGTGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACTAGTCAGGGACACTGATAGGTTGTGTAAGGACAGGTGCTTTT  300

seq1  GTGTGCTATTAGAGCTGTTTATTTCATTGGTTTCCTTTACTGTCATCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTATTAGAGCTGTTTATTTCATTGGTTTCCTTTACTGTCATCACT  350

seq1  GGCTCCTCATTTGAAGCACGGTGTCTTTCTTGGGCATACTGGCTTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCATTTGAAGCACGGTGTCTTTCTTGGGCATACTGGCTTTTTCA  400

seq1  TACTACCCACCCACTTTCTATGAAATCTTCTGACAATGTTTATGCTACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCCACCCACTTTCTATGAAATCTTCTGACAATGTTTATGCTACGT  450

seq1  ATAGGGAATGGGCTGTTGTGTATCCTGTTTTACTTCTGGGAAATAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAATGGGCTGTTGTGTATCCTGTTTTACTTCTGGGAAATAATACA  500

seq1  GTTTCTGGGATTTTTCTGTTTATGGTGCTTCAGAGTACTTGCTGATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGGATTTTTCTGTTTATGGTGCTTCAGAGTACTTGCTGATACTT  550

seq1  TTCTGTTATTGTTTGAAAGAAAGAGGTCAATAAAACTAAAATCTCCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTATTGTTTGAAAGAAAGAGGTCAATAAAACTAAAATCTCCAATG  600

seq1  TGTGGGACACTCCACATACTGTGTGCATAATATTTATATCACTAGTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGACACTCCACATACTGTGTGCATAATATTTATATCACTAGTCTAT  650

seq1  TCCCCGATGTAAAATCTGAAAGCAGAACAAAGCCTCTGTTTCTATACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGATGTAAAATCTGAAAGCAGAACAAAGCCTCTGTTTCTATACACA  700

seq1  ATTAAGAGTAATGGAACACTGGCTTTTTCAAGATGGATAC-TTGATGAAG  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTAAGAGTAATGGAACACTGGCTTTTTCAAGATGGATACTTTGATGAAG  750

seq1  -TTAGAAGATTATAATGAAATTTATAGGCTGACATTCAGATGGGTAAAAC  798
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTAGAAGATTATAATG-AATTTATAGGCTGACATTCAGATGGGTAAAAC  799

seq1  TTTGAAGATAGGTTTCTGGCAAGCAAAAGACTTGATTTCATTATTTAATG  848
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  TTTGAAGATAGGTTTCTGGC-AGCAAAAGATTTGATTTCATTATTTAATG  848

seq1  ATACATCAAGTCCTAAAAATTATCCTGTCCAGGACAAGTATCTTTAAAAA  898
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  ATACATCAAGTCCT-AAAATTATCCTGTCCA-GACAAGTATCTTTAAAAA  896

seq1  TTATCTAATTTTTCCAGCCACATTCAGAAA-TGTCAAGTATCACAAACCA  947
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TTATCTAATTTTTCCAGCCACATTCAGAAATTGTCAAGTATCAC-AACCA  945

seq1  GTGAGAAAAAGTCTGTACAGAAGGAAAGGACCAGCAAGAAACTCAATGAG  997
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  GTGAGAAAAAGTCTGTACAGAAGGAAAGGACCAGCAAGAAACTCATGGAG  995

seq1  CCTCTTCCAAGCATCATTTTCAGGTTCTAAAAAGTTCCCTTCAAAGTAGT  1047
      |||||| ||||||||| ||||| ||||| ||||||||||||| |||||||
seq2  CCTCTT-CAAGCATCA-TTTCA-GTTCT-AAAAGTTCCCTTC-AAGTAGT  1040

seq1  AACCCTGATGTCTATCCTATAGAGAAGGGCACTTGGGCCTGAGCTTGGTA  1097
       ||||||||||||||| || ||||||||||||||||| |||| |||||||
seq2  -ACCCTGATGTCTATCTTA-AGAGAAGGGCACTTGGGGCTGAACTTGGTA  1088

seq1  TGTTAAGTGACTGCCTAGATCTGGATGGATATTTATTGCTTTTATTCCTT  1147
      ||||||||||| | ||| ||| | ||||| ||||| ||| |||| |||||
seq2  TGTTAAGTGAC-GGCTA-ATCGGAATGGA-ATTTA-TGC-TTTAATCCTT  1133

seq1  CATTATTTTTATTGAGTATCCATTGATTGCCTAAGACAT-GCTGT-GCAC  1195
      |||   |||||| ||| || ||| || || ||||||||| || || ||||
seq2  CAT--ATTTTATGGAG-ATACATGGA-TGGCTAAGACATGGCCGTGGCAC  1179

seq1  AGTT  1199
      ||||
seq2  AGTT  1183