BAC Information

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BAC

Clone NameB6Ng01-055L19
Chromosome2 (Build37)
Map Location 90,786,687 - 90,841,115
singlet/doubletdoublet
Overlap geneCugbp1
Upstream geneOlfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1
Downstream geneLOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055L19.bB6Ng01-055L19.g
ACCDH878099DH878100
length1,069990
definitionDH878099|Mus musculus domesticus DNA, BAC clone: B6Ng01-055L19, 5' end.DH878100|Mus musculus domesticus DNA, BAC clone: B6Ng01-055L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,786,687 - 90,787,751)(90,840,123 - 90,841,115)
sequence
gaattcattatgtcacctagattggccttaaacttatttgaatatattat
cttatcctctctcccaagttggaaccttaggcttgagcccaccatgcctg
attttctgagttgaatttctagcaggctccagagttggctgctgttgatt
tacccactctttgcttgatatatcttggcacacagaaacagccaacaggc
aagtaaaatagaaacaagaaaagttggataaaaaacttctgtaattgaga
gttgatgttttttttttttttttggtttttcgagacagggtttctctgta
tagccctggctgtcctggaactcacttggtagaccaggctagccttgaac
tcagaaatccacctgcctctgccacccaagtgctgggataatgtttcctt
ttttaaattgtagaatccttaatgtagaagcttaatggtttgaaaaagtg
gtgtgtcttgcatgggatgcagcttgagaggaaagttgtgatagcctgac
atgcagtatttataaattgttatcaccattgtgacctttccccccacccc
cacccccatctttaaagataactgtagtaggagagaagcttgggttaaga
gcacttgctgttcttccagtgaacccagtttcagtttgcagtacccatgt
gttagctcacaactgtctgtaactccagttccaaggtatctgacactctt
ggcctttgtgggtcagcacatgtggtgcacctgtgtatgtagaggcaaaa
cacacacacacccgtaaagataataactctgaacttaataccagaattaa
cttattaacttgagcagtgttggtaatttcctctgtaatagtactgtact
gttttttctaaatgttttcatttttttgaaaatttttatacaatatatgt
ctttgttgttactgttttagttgtagaaatactacctaaagcaactttgg
gggaggaaagggttttttgacttccagtcctcttgtagtcatcattggaa
tctgggatagggattcaaacagggcaggaatctgcagttagacctgatgc
tgaggacatggagggcatg
gaattcttagaatatttctatccctacagcactgctgaaattcaaaacct
gaacgagcttactaaaactgagggaagaaaaggttgggatgaaggctgtt
accttttggggggagctgtagaggtgctgtactgacagggtttccttgtg
tagcccttgctgtcctgaaactagcttttgtaccccaggctgacttccaa
ctcagagatccgcctgtctctgccttccagttctgggattaaaggtgtgc
catgaccacctgacaaaggggtgatttttaaagcacctttctttgtccca
gtctattatagctctaggttttatttctagcttccttgtagtcagcagaa
atcttcttttgatgcttctgtaacttctctgggaaaatgcttctccaccc
cacccccgcccccgccccttgagacaagatctcatatagcataggctggc
tttgaattatcaacgatgtccttgaactcctgcccccacctactaagagt
tttgattacagtatacacagtcatgcctggctacaaggctctctttacaa
aggttatgtgccattccatttaacctgtcctaccacaaactaggttaaga
tgctgaggaagaggaactagccaccaagctagacacagttactactctcg
taccctggttttctggaaaccctaaccctgattttctctctgcttgctca
gaataaactactccctctatcacaaccaattttaaaaattttattttatt
attttatttatatgtatgggtgttttgtttgtgtaccatatatgcctggc
cctgaggaggccaaaagagggcaatggctcccttcagactggatttacat
ctgctgtgaagaaggctggatctttgacgttgcagccgagcactaagtgc
tgggcggcttctccagactcttcctcacagccagttctcaccacacactt
ccatttaactatcacctataaactgtaacattacgtaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90786687_90787751
seq2: B6Ng01-055L19.b_46_1114

seq1  GAATTCATTATGTCACCTAGATTGGCCTTAAACTTATTTGAATATATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTCACCTAGATTGGCCTTAAACTTATTTGAATATATTAT  50

seq1  CTTATCCTCTCTCCCAAGTTGGAACCTTAGGCTTGAGCCCACCATGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCTCTCTCCCAAGTTGGAACCTTAGGCTTGAGCCCACCATGCCTG  100

seq1  ATTTTCTGAGTTGAATTTCTAGCAGGCTCCAGAGTTGGCTGCTGTTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGAGTTGAATTTCTAGCAGGCTCCAGAGTTGGCTGCTGTTGATT  150

seq1  TACCCACTCTTTGCTTGATATATCTTGGCACACAGAAACAGCCAACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACTCTTTGCTTGATATATCTTGGCACACAGAAACAGCCAACAGGC  200

seq1  AAGTAAAATAGAAACAAGAAAAGTTGGATAAAAAACTTCTGTAATTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAATAGAAACAAGAAAAGTTGGATAAAAAACTTCTGTAATTGAGA  250

seq1  GTTGATGTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTA  300

seq1  TAGCCCTGGCTGTCCTGGAACTCACTTGGTAGACCAGGCTAGCCTTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGGAACTCACTTGGTAGACCAGGCTAGCCTTGAAC  350

seq1  TCAGAAATCCACCTGCCTCTGCCACCCAAGTGCTGGGATAATGTTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCACCTGCCTCTGCCACCCAAGTGCTGGGATAATGTTTCCTT  400

seq1  TTTTAAATTGTAGAATCCTTAATGTAGAAGCTTAATGGTTTGAAAAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTGTAGAATCCTTAATGTAGAAGCTTAATGGTTTGAAAAAGTG  450

seq1  GTGTGTCTTGCATGGGATGCAGCTTGAGAGGAAAGTTGTGATAGCCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTTGCATGGGATGCAGCTTGAGAGGAAAGTTGTGATAGCCTGAC  500

seq1  ATGCAGTATTTATAAATTGTTATCACCATTGTGACCTTTCCCCCCACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTATTTATAAATTGTTATCACCATTGTGACCTTTCCCCCCACCCC  550

seq1  CACCCCCATCTTTAAAGATAACTGTAGTAGGAGAGAAGCTTGGGTTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCATCTTTAAAGATAACTGTAGTAGGAGAGAAGCTTGGGTTAAGA  600

seq1  GCACTTGCTGTTCTTCCAGTGAACCCAGTTTCAGTTTGCAGTACCCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGCTGTTCTTCCAGTGAACCCAGTTTCAGTTTGCAGTACCCATGT  650

seq1  GTTAGCTCACAACTGTCTGTAACTCCAGTTCCAAGGTATCTGACACTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTCACAACTGTCTGTAACTCCAGTTCCAAGGTATCTGACACTCTT  700

seq1  GGCCTTTGTGGGTCAGCACATGTGGTGCACCTGTGTATGTAGAGGCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGTGGGTCAGCACATGTGGTGCACCTGTGTATGTAGAGGCAAAA  750

seq1  CACACACACACCCGTAAAGATAATAACTCTGAACTTAATACCAGAATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACCCGTAAAGATAATAACTCTGAACTTAATACCAGAATTAA  800

seq1  CTTA-TAACTTGAGCAGTGTTGGTAATTTCCTCTGTTATAGTACTGTACT  849
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTATTAACTTGAGCAGTGTTGGTAATTTCCTCTGTAATAGTACTGTACT  850

seq1  G-TTTTTCTAAATGTTTTCA-TTTTTTGAGAA-TTTTATACAATATATGT  896
      | |||||||||||||||||| |||||||| || |||||||||||||||||
seq2  GTTTTTTCTAAATGTTTTCATTTTTTTGAAAATTTTTATACAATATATGT  900

seq1  C-TTGGTGTTACTGTTTTAG-TGTAGAAATACTACCTAAAGCAACTT--G  942
      | ||| |||||||||||||| ||||||||||||||||||||||||||  |
seq2  CTTTGTTGTTACTGTTTTAGTTGTAGAAATACTACCTAAAGCAACTTTGG  950

seq1  GGGAGGAAAGGGTTTTTTGACTTCCAGTTCCACATTGTAGTTCATCATTG  992
      ||||||||||||||||||||||||||| ||| | |||||| |||||||||
seq2  GGGAGGAAAGGGTTTTTTGACTTCCAG-TCCTC-TTGTAG-TCATCATTG  997

seq1  GAAATCAGGACAGGAATTCAGACAGGGCAGGAATCTGCAGGTAGGAGCTG  1042
      |||    ||| ||| ||||| ||||||||||||||||||| || || |||
seq2  GAATCTGGGATAGGGATTCAAACAGGGCAGGAATCTGCAGTTA-GACCTG  1046

seq1  ATGCTGAGGACATGAGGGGCATG  1065
      ||||||||||||||  |||||||
seq2  ATGCTGAGGACATGGAGGGCATG  1069

seq1: chr2_90840123_90841115
seq2: B6Ng01-055L19.g_68_1057 (reverse)

seq1  TCTTAAGTAATGTTACAGTCTGATAGGTGATAGTTAAATTGGAAGTGTGT  50
      ||||| ||||||||||||| | |||||||||||||||| |||||||||||
seq2  TCTTACGTAATGTTACAGT-TTATAGGTGATAGTTAAA-TGGAAGTGTGT  48

seq1  GGTGAGAACTGGCTGTGAGGAAGAGTCTGGAG-AGGCGCACAGCACTTAG  99
      |||||||||||||||||||||||||||||||| || ||| ||||||||||
seq2  GGTGAGAACTGGCTGTGAGGAAGAGTCTGGAGAAGCCGCCCAGCACTTAG  98

seq1  TGCTCTGGCTGC-ACGTGCAAAGATCCAGCCTTCTTCACAGCAGATGTAA  148
      ||||| |||||| |||| ||||||||||||||||||||||||||||||||
seq2  TGCTC-GGCTGCAACGT-CAAAGATCCAGCCTTCTTCACAGCAGATGTAA  146

seq1  ATCCAGTCTGAAGGGAGCCATTGCCCTCTTTTGGCCTCCTCAGGACCAGG  198
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCCAGTCTGAAGGGAGCCATTGCCCTCTTTTGGCCTCCTCAGGGCCAGG  196

seq1  CATATATGGTACACAAACAAAACACCCATACATATAAAATAAAATAATAA  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATATATGGTACACAAACAAAACACCCATACATAT-AAATAAAATAATAA  245

seq1  AATAAAATTTTTAAAATTGGTTGTGATAGAGGGAGTAGTTTATTCTGAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTTTTAAAATTGGTTGTGATAGAGGGAGTAGTTTATTCTGAGC  295

seq1  AAGCAGAGAGAAAATCAGGGTTAGGGTTTCCAGAAAACCAGGGTACGAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGAGAAAATCAGGGTTAGGGTTTCCAGAAAACCAGGGTACGAGA  345

seq1  GTAGTAACTGTGTCTAGCTTGGTGGCTAGTTCCTCTTCCTCAGCATCTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAACTGTGTCTAGCTTGGTGGCTAGTTCCTCTTCCTCAGCATCTTA  395

seq1  ACCTAGTTTGTGGTAGGACAGGTTAAATGGAATGGCACATAACCTTTGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTTTGTGGTAGGACAGGTTAAATGGAATGGCACATAACCTTTGTA  445

seq1  AAGAGAGCCTTGTAGCCAGGCATGACTGTGTATACTGTAATCAAAACTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCCTTGTAGCCAGGCATGACTGTGTATACTGTAATCAAAACTCT  495

seq1  TAGTAGGTGGGGGCAGGAGTTCAAGGACATCGTTGATAATTCAAAGCCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGTGGGGGCAGGAGTTCAAGGACATCGTTGATAATTCAAAGCCAG  545

seq1  CCTATGCTATATGAGATCTTGTCTCAAGGGGCGGGGGCGGGGGTGGGGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTATATGAGATCTTGTCTCAAGGGGCGGGGGCGGGGGTGGGGTG  595

seq1  GAGAAGCATTTTCCCAGAGAAGTTACAGAAGCATCAAAAGAAGATTTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCATTTTCCCAGAGAAGTTACAGAAGCATCAAAAGAAGATTTCTG  645

seq1  CTGACTACAAGGAAGCTAGAAATAAAACCTAGAGCTATAATAGACTGGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTACAAGGAAGCTAGAAATAAAACCTAGAGCTATAATAGACTGGGA  695

seq1  CAAAGAAAGGTGCTTTAAAAATCACCCCTTTGTCAGGTGGTCATGGCACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGGTGCTTTAAAAATCACCCCTTTGTCAGGTGGTCATGGCACA  745

seq1  CCTTTAATCCCAGAACTGGAAGGCAGAGACAGGCGGATCTCTGAGTTGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGAACTGGAAGGCAGAGACAGGCGGATCTCTGAGTTGGA  795

seq1  AGTCAGCCTGGGGTACAAAAGCTAGTTTCAGGACAGCAAGGGCTACACAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCTGGGGTACAAAAGCTAGTTTCAGGACAGCAAGGGCTACACAA  845

seq1  GGAAACCCTGTCAGTACAGCACCTCTACAGCTCCCCCCAAAAGGTAACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCTGTCAGTACAGCACCTCTACAGCTCCCCCCAAAAGGTAACAG  895

seq1  CCTTCATCCCAACCTTTTCTTCCCTCAGTTTTAGTAAGCTCGTTCAGGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCCCAACCTTTTCTTCCCTCAGTTTTAGTAAGCTCGTTCAGGTT  945

seq1  TTGAATTTCAGCAGTGCTGTAGGGATAGAAATATTCTAAGAATTC  993
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTCAGCAGTGCTGTAGGGATAGAAATATTCTAAGAATTC  990