BAC Information

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BAC

Clone NameB6Ng01-056O18
Chromosome2 (Build37)
Map Location 115,193,282 - 115,321,311
singlet/doubletdoublet
Overlap geneLOC100043232
Upstream geneAtpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056O18.bB6Ng01-056O18.g
ACCDH878938DH878939
length5141,108
definitionDH878938|Mus musculus domesticus DNA, BAC clone: B6Ng01-056O18, 5' end.DH878939|Mus musculus domesticus DNA, BAC clone: B6Ng01-056O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,193,282 - 115,193,801)(115,320,183 - 115,321,311)
sequence
cccttatcttattttattttatttttcttaagacaagagtcttattgtgt
tcccaggctgggcctcaaactgagaatcctcctgcctcaggctctcaggc
tggaagtactggcatgtaccaccatgtttaggaaaaaattccattcacta
ggccattgagtcattcacacagctttccgacaagctctctccaagtctgt
cagtctgagctgttgagaacatagtccaacttcaatgcacatgtaattct
gacacttgttattttacccgaagcacttattcacattacactgaagctga
ttatttttgctgaatggctatgtttatttaataacatcaaagacttgcaa
ttttaaggtcgtgtttcatgaaatccttactgagtctgtgttaaatttct
ttgtccccctttgattacccaattgattcagtttcagactaacgtgtctt
ccacaaataatcatttgtgttcaaaataaaagaacacagaaaaatcccac
gtgaattgagtctt
gaattctggggaccttccagaggttgtatacatgccagggctctgagagg
ctgcatgagttgttggttagttgttgttggttcagtttgtaaagtagcca
cacacgaagaagaaatgacaagaaattagatattctggtggggaagacca
aactgggcccgaggaactcaatgcacctaatcagtaggaagtagtctaac
attgcccctttccaacccctgacagtattcagggatattgttccttttct
ctctatccccatttttttttctgtcttatttagtgttagggcattgaaag
ggtggaagaagatgggcaggagaagcaaaaagaacccataaagtatcaaa
agaaaagacagctacaagggactaatgctgtggtttatctttcagtcgct
gtcagatcatctgactttagcttcctgctcaacttattctttgataaggc
aggttctccatataatattacccacacaattagctcctgcaagtgccttg
ctatgtgtacttccaattgctgtcagcattttggctatattcatcaccag
caaaaaaaaaaaattcctaatttcaatcagctaatcataaatcaatgcat
tcattcacagatttgttcaagaacttaccaaatgatgaatgcatcattcc
tttattcctttaaagggaagcccggaggtctttaacatgaaagtaaactg
aaatacttccttgttcctcttggatttcttcacttctttcatgaggtagc
atgacattcctttcctctgcctctctcttgctcattctttagaaataact
tagaagtatttttgaatccttgctcaccttgaaaaggttatttgcttcat
gcttccaataagaatgctgtgcttcttttagatctcacatttgcactttg
tgtggttggtttatctgattatttaaaaaaaagcttttcagcaattaaat
tatgcttttttggcatgcttgcaaagcagattagttgaataaaagaaaag
gttagccatagtttcacttcccaaataagctgtcattactatctgaagtt
ttcttccagtactttctttaatgcagcattttaattttacttgtaacaca
catcaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115193282_115193801
seq2: B6Ng01-056O18.b_49_568

seq1  GAATTCCCCTTATCTTATTTTATTTTATTTTTCTTAAGACAAGAGTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTTATCTTATTTTATTTTATTTTTCTTAAGACAAGAGTCTTA  50

seq1  TTGTGTTCCCAGGCTGGGCCTCAAACTGAGAATCCTCCTGCCTCAGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCCCAGGCTGGGCCTCAAACTGAGAATCCTCCTGCCTCAGGCTC  100

seq1  TCAGGCTGGAAGTACTGGCATGTACCACCATGTTTAGGAAAAAATTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGGAAGTACTGGCATGTACCACCATGTTTAGGAAAAAATTCCAT  150

seq1  TCACTAGGCCATTGAGTCATTCACACAGCTTTCCGACAAGCTCTCTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGGCCATTGAGTCATTCACACAGCTTTCCGACAAGCTCTCTCCAA  200

seq1  GTCTGTCAGTCTGAGCTGTTGAGAACATAGTCCAACTTCAATGCACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCAGTCTGAGCTGTTGAGAACATAGTCCAACTTCAATGCACATGT  250

seq1  AATTCTGACACTTGTTATTTTACCCGAAGCACTTATTCACATTACACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGACACTTGTTATTTTACCCGAAGCACTTATTCACATTACACTGA  300

seq1  AGCTGATTATTTTTGCTGAATGGCTATGTTTATTTAATAACATCAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTATTTTTGCTGAATGGCTATGTTTATTTAATAACATCAAAGAC  350

seq1  TTGCAATTTTAAGGTCGTGTTTCATGAAATCCTTACTGAGTCTGTGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTTTAAGGTCGTGTTTCATGAAATCCTTACTGAGTCTGTGTTAA  400

seq1  ATTTCTTTGTCCCCCTTTGATTACCCAATTGATTCAGTTTCAGACTAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTGTCCCCCTTTGATTACCCAATTGATTCAGTTTCAGACTAACG  450

seq1  TGTCTTCCACAAATAATCATTTGTGTTCAAAATAAAAGAACACAGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCACAAATAATCATTTGTGTTCAAAATAAAAGAACACAGAAAAA  500

seq1  TCCCACGTGAATTGAGTCTT  520
      ||||||||||||||||||||
seq2  TCCCACGTGAATTGAGTCTT  520

seq1: chr2_115320183_115321311
seq2: B6Ng01-056O18.g_70_1177 (reverse)

seq1  GTTTGATGTTGTTGTTAC-AGTATAAATTATAAATGCCTGCATTTAAAAG  49
      |||||||||   |||||| |||| |||||| ||||| |||||||  ||||
seq2  GTTTGATGT--GTGTTACAAGTA-AAATTA-AAATG-CTGCATT--AAAG  43

seq1  AAAAGTACATGGAAGAAAACATCAAGATAGTAATGACAGCTATATTTGAG  99
       ||||||| ||||||||||| || ||||||||||||||||| |||||| |
seq2  -AAAGTAC-TGGAAGAAAACTTC-AGATAGTAATGACAGCT-TATTTGGG  89

seq1  AAGTGAAACTATGGCTAACCTTTTCTTTTATTCAACTTATCTGCTTTTTC  149
      ||||||||||||||||||||||||||||||||||||| ||||||  ||| 
seq2  AAGTGAAACTATGGCTAACCTTTTCTTTTATTCAACTAATCTGC--TTTG  137

seq1  CAAGCATGCCACAAAAAGCATAATTTAATTGCTGAAAATGCTTTTTTTTT  199
      ||||||||||| |||||||||||||||||||||||||| || ||||||||
seq2  CAAGCATGCCA-AAAAAGCATAATTTAATTGCTGAAAA-GC-TTTTTTTT  184

seq1  AAATAAATCAAGATAAAAACCAACCACACAAAGTGCAAATGTGAGATCTA  249
      |||| |||| ||||  ||||||||||||||||||||||||||||||||||
seq2  AAAT-AATC-AGAT--AAACCAACCACACAAAGTGCAAATGTGAGATCTA  230

seq1  AAAGAAGCACAGCATTTCTTATTTGGAAGCATGAAGCAAATAACCTTTTC  299
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  AAAGAAGCACAGCA-TTCTTA-TTGGAAGCATGAAGCAAATAACCTTTTC  278

seq1  AAGGTGAGCAAGGATTCAAAAATACTTCTAAGTTATTTCTAAAGAATGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGCAAGGATTCAAAAATACTTCTAAGTTATTTCTAAAGAATGAG  328

seq1  CAAGAGAGAGGCAGAGGAAAGGAATGTCATGCTACCTCATGAAAGAAGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGAGGCAGAGGAAAGGAATGTCATGCTACCTCATGAAAGAAGTG  378

seq1  AAGAAATCCAAGAGGAACAAGGAAGTATTTCAGTTTACTTTCATGTTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCCAAGAGGAACAAGGAAGTATTTCAGTTTACTTTCATGTTAAA  428

seq1  GACCTCCGGGCTTCCCTTTAAAGGAATAAAGGAATGATGCATTCATCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCGGGCTTCCCTTTAAAGGAATAAAGGAATGATGCATTCATCATT  478

seq1  TGGTAAGTTCTTGAACAAATCTGTGAATGAATGCATTGATTTATGATTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTTCTTGAACAAATCTGTGAATGAATGCATTGATTTATGATTAG  528

seq1  CTGATTGAAATTAGGAATTTTTTTTTTTTGCTGGTGATGAATATAGCCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGAAATTAGGAATTTTTTTTTTTTGCTGGTGATGAATATAGCCAA  578

seq1  AATGCTGACAGCAATTGGAAGTACACATAGCAAGGCACTTGCAGGAGCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGACAGCAATTGGAAGTACACATAGCAAGGCACTTGCAGGAGCTA  628

seq1  ATTGTGTGGGTAATATTATATGGAGAACCTGCCTTATCAAAGAATAAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGGGTAATATTATATGGAGAACCTGCCTTATCAAAGAATAAGTT  678

seq1  GAGCAGGAAGCTAAAGTCAGATGATCTGACAGCGACTGAAAGATAAACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAAGCTAAAGTCAGATGATCTGACAGCGACTGAAAGATAAACCA  728

seq1  CAGCATTAGTCCCTTGTAGCTGTCTTTTCTTTTGATACTTTATGGGTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTAGTCCCTTGTAGCTGTCTTTTCTTTTGATACTTTATGGGTTCT  778

seq1  TTTTGCTTCTCCTGCCCATCTTCTTCCACCCTTTCAATGCCCTAACACTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTCTCCTGCCCATCTTCTTCCACCCTTTCAATGCCCTAACACTA  828

seq1  AATAAGACAGAAAAAAAAATGGGGATAGAGAGAAAAGGAACAATATCCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACAGAAAAAAAAATGGGGATAGAGAGAAAAGGAACAATATCCCT  878

seq1  GAATACTGTCAGGGGTTGGAAAGGGGCAATGTTAGACTACTTCCTACTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGTCAGGGGTTGGAAAGGGGCAATGTTAGACTACTTCCTACTGA  928

seq1  TTAGGTGCATTGAGTTCCTCGGGCCCAGTTTGGTCTTCCCCACCAGAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGCATTGAGTTCCTCGGGCCCAGTTTGGTCTTCCCCACCAGAATA  978

seq1  TCTAATTTCTTGTCATTTCTTCTTCGTGTGTGGCTACTTTACAAACTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTCTTGTCATTTCTTCTTCGTGTGTGGCTACTTTACAAACTGAA  1028

seq1  CCAACAACAACTAACCAACAACTCATGCAGCCTCTCAGAGCCCTGGCATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACAACTAACCAACAACTCATGCAGCCTCTCAGAGCCCTGGCATG  1078

seq1  TATACAACCTCTGGAAGGTCCCCAGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  TATACAACCTCTGGAAGGTCCCCAGAATTC  1108