BAC Information

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BAC

Clone NameB6Ng01-057B21
Chromosome1 (Build37)2 (Build37)
Map Location 26,657,764 - 26,658,857145,830,263 - 145,830,806
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik, LOC677427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057B21.bB6Ng01-057B21.g
ACCDH879082DH879083
length1,0821,012
definitionDH879082|Mus musculus domesticus DNA, BAC clone: B6Ng01-057B21, 5' end.DH879083|Mus musculus domesticus DNA, BAC clone: B6Ng01-057B21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,657,764 - 26,658,857)(145,830,263 - 145,830,806)
sequence
gaattcaaagcatacaccactaacccctaaccattctcacttattctttt
agttcagacaaaaggtatagatagtgctattggagcactatttatccaaa
cacagtgcctgtgttctgatgcccaaaactattcctactgttacaaacag
tggcttttaaatatctgtgcttcttaactggaatttttagccagttcata
gggtttttcctagaaactgatgtttactgcactaatacatgtgaattaat
gtgctttttccgtcatggaaaaaaaaaaaagaatcatataagcatcataa
catgccagcatcgacatctgttcttcaggggatacctcagtgtattacag
catattgttgtttttatgaaaacatctattttcttgcctctactctttca
tcgtaccgataagaaaaaaaaatagccaagaaagaattgacaaacactga
tacccgattccctaggactgtgctttctatataatgtggatccaactctt
tcatctcaatgttgaaatgaaggaaaaagtacattttaagaagataatct
acaaagaaaagtattcttgaagatcacttaatgaagtttctctcatttaa
aaggtgaaaatgtaacagtatgagtaaaattctcagctataggaattaaa
cgataatatacagaagctgccttccagttctgagcattgtggtgcaagaa
catggaaagaaacagattaaaaaaagaaaaaaaaaaaaaggattgatgga
agagaaaccctgtcagcacctgactaatacaaatgcacatacttacagac
aaccataggactgagccttgggaagagttaaggaaaggaatgaggaagct
gaagggaatgcaaccctatacaaagaacaacaatatcataaactggaccc
tccccacctccacccagagcgctcaggaataaatcatcaccacagagtat
acatggagggatccatgatccagctatgtatatagctgagattgcctata
tggcatcaatgggagggagggaagccttgtcctgtggacattaatagtgt
agggtgaagataaagctatgaggcaggatggg
gaattctgcactaaaccagtctggtcctgggcattttttgcctgggagac
tattaataactgcttttatttctttaggggatttgggactgtttagatcg
ttaacttgatcctgattcaactttggtacctggtatctgtccagaaattt
gtccatttagtccaggttttccagttttgttgagtatagccttttgtaga
aggatctacttgtgttttggatttcttcaggatctgttgttatgtctccc
ttttcatttctgattttgttaattaggattttgtccctgtgctctctagt
gagtctatctaagggtttatctatcttgttgattttctcaaagaaccaac
tcctcatttggttaattctttgaatagttcttcttgtttccacttggttg
atttcacccctgaggttgattatttcctgccttctactcctcttgggtga
atttgcttccttttttctagggcttttagatgtgttgtcaagctgctagt
gtgtgctctctccagtttcttcttggaggcactaagagctatgagtttcc
ctcttagaaatgctttcattgtgtcccataggtttgggtatgttgtggct
gcattttcattaaactctaaaaagtctttaatttctttctttattccatt
ctttaccaaggtatcattgagaagagtgttattcagtttccacgtgaaag
ttggctttccattatttatgttgttattgaagatcagtcttaggccatgg
tggtctgataggatacatgggacaatttcaatatttttgtatttgttgag
gcctgttttatgtccaaattatatggtcatttaggagaaggtcccgtgag
gtgctgagaagaaggatatcttttgttttaggataaaatgttctgtagat
atctgctaagtcattggttcataacttctgttagttcactgggtccctat
ttagtttctgttaacaatctatggatgaagtgtgtgttgaagtctcccac
ctttaatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_26657764_26658857
seq2: B6Ng01-057B21.b_46_1127 (reverse)

seq1  CCCACTCCTGCCTCATAGCTCTATCATCACCCTACACTATTAAATGTCCA  50
      |||| ||||||||||||||| |||| ||||||||||||||| ||||||||
seq2  CCCA-TCCTGCCTCATAGCTTTATCTTCACCCTACACTATT-AATGTCCA  48

seq1  CAGGACCAAGGGCCTCCCCTCCCTCCCATTGATGCCATATAAGGCAATCC  100
      ||||| |||||  || |||||||||||||||||||||||| ||||||| |
seq2  CAGGA-CAAGG--CTTCCCTCCCTCCCATTGATGCCATAT-AGGCAAT-C  93

seq1  TCAGCTATATACATAGCTGGAATCATGGATCCCTCCATGTATACTCTGTG  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAGCTATATACATAGCTGG-ATCATGGATCCCTCCATGTATACTCTGTG  142

seq1  GTTGATGATTTATTCCCTGAGCGCTCTGGGTGGAGGTGGGGAGGGTCCAG  200
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  G-TGATGATTTATT-CCTGAGCGCTCTGGGTGGAGGTGGGGAGGGTCCAG  190

seq1  TTTATTGATATTGTTGTTCTTTGTATAGGGTTGCATTCCCTTCAGCTTCC  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTA-TGATATTGTTGTTCTTTGTATAGGGTTGCATTCCCTTCAGCTTCC  239

seq1  TCATTCCTTTCCTTAACTCTTCCCAAGGCTCAGTCCTATGGTTGTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTTCCTTAACTCTTCCCAAGGCTCAGTCCTATGGTTGTCTGTA  289

seq1  AGTATGTGCATTTGTATTAGTCAGGTGCTGACAGGGTTTCTCTTCCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTGCATTTGTATTAGTCAGGTGCTGACAGGGTTTCTCTTCCATCA  339

seq1  ATCCTTTTTTTTTTTTTCTTTTTTTAATCTGTTTCTTTCCATGTTCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTTTTTTTTTTCTTTTTTTAATCTGTTTCTTTCCATGTTCTTGC  389

seq1  ACCACAATGCTCAGAACTGGAAGGCAGCTTCTGTATATTATCGTTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATGCTCAGAACTGGAAGGCAGCTTCTGTATATTATCGTTTAATT  439

seq1  CCTATAGCTGAGAATTTTACTCATACTGTTACATTTTCACCTTTTAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGCTGAGAATTTTACTCATACTGTTACATTTTCACCTTTTAAATG  489

seq1  AGAGAAACTTCATTAAGTGATCTTCAAGAATACTTTTCTTTGTAGATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTTCATTAAGTGATCTTCAAGAATACTTTTCTTTGTAGATTAT  539

seq1  CTTCTTAAAATGTACTTTTTCCTTCATTTCAACATTGAGATGAAAGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAAAATGTACTTTTTCCTTCATTTCAACATTGAGATGAAAGAGTT  589

seq1  GGATCCACATTATATAGAAAGCACAGTCCTAGGGAATCGGGTATCAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCACATTATATAGAAAGCACAGTCCTAGGGAATCGGGTATCAGTGT  639

seq1  TTGTCAATTCTTTCTTGGCTATTTTTTTTTTCTTATCGGTACGATGAAAG  700
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGTCAATTCTTTCTTGGCTA-TTTTTTTTTCTTATCGGTACGATGAAAG  688

seq1  AGTAGAGGCAAGAAAATAGATGTTTTCATAAAAACAACAATATGCTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGGCAAGAAAATAGATGTTTTCATAAAAACAACAATATGCTGTAA  738

seq1  TACACTGAGGTATCCCCTGAAGAACAGATGTCGATGCTGGCATGTTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGAGGTATCCCCTGAAGAACAGATGTCGATGCTGGCATGTTATGA  788

seq1  TGCTTATATGATTCTTTTTTTTTTTTCCATGACGGAAAAAGCACATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATATGATTCTTTTTTTTTTTTCCATGACGGAAAAAGCACATTAAT  838

seq1  TCACATGTATTAGTGCAGTAAACATCAGTTTCTAGGAAAAACCCTATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTATTAGTGCAGTAAACATCAGTTTCTAGGAAAAACCCTATGAA  888

seq1  CTGGCTAAAAATTCCAGTTAAGAAGCACAGATATTTAAAAGCCACTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAAAAATTCCAGTTAAGAAGCACAGATATTTAAAAGCCACTGTTT  938

seq1  GTAACAGTAGGAATAGTTTTGGGCATCAGAACACAGGCACTGTGTTTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGTAGGAATAGTTTTGGGCATCAGAACACAGGCACTGTGTTTGGA  988

seq1  TAAATAGTGCTCCAATAGCACTATCTATACCTTTTGTCTGAACTAAAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTGCTCCAATAGCACTATCTATACCTTTTGTCTGAACTAAAAGA  1038

seq1  ATAAGTGAGAATGGTTAGGGGTTAGTGGTGTATGCTTTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGAGAATGGTTAGGGGTTAGTGGTGTATGCTTTGAATTC  1082

seq1: chr2_145830263_145830806
seq2: B6Ng01-057B21.g_562_1078 (reverse)

seq1  CACACATTGCATCTCACACAATAATAGTGGGAGACTTCAACACACCACTT  50
                    |||||| |||  |||||||||||||||||| ||| |
seq2  --------------CACACATTAAAGGTGGGAGACTTCAACACA-CAC-T  34

seq1  TCATCAAGGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAA  100
      |||||     | ||||  ||  ||||||||||||| |||||| ||||| |
seq2  TCATC----CATAGAT--TGTTAACAGAAACTAAATAGGGACCCAGTG-A  77

seq1  ACTAACAGAAGTTATGAAACAAATGGACCTAACAGATATCTACAGAACAT  150
      |||||||||||||||||| |||   ||| || ||||||||||||||||||
seq2  ACTAACAGAAGTTATGAACCAA--TGACTTAGCAGATATCTACAGAACAT  125

seq1  TTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACC  200
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  TTTATCCTAAAACAAAA-GATAT-CCTTCTTCTCAGCACCTCACGGGACC  173

seq1  TTCTCCAAAATTGACCATATAA-TTGGTCACAAAACAGGCCTCAACAGAT  249
      |||||| ||| ||||||||||| |||| || |||||||||||||||| ||
seq2  TTCTCCTAAA-TGACCATATAATTTGGACATAAAACAGGCCTCAACAAAT  222

seq1  ACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTA  272

seq1  AGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTG  349
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACTTTCACGTG  322

seq1  GAAACTGAACAACACTCTTCTCAATGATACGTTGGTAAAGGAAGGAATAA  399
      ||||||||| |||||||||||||||||||| ||||||||| | |||||||
seq2  GAAACTGAATAACACTCTTCTCAATGATACCTTGGTAAAGAATGGAATAA  372

seq1  AGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAATG  449
      ||||||||||||||||||||||||||||||||||||||| ||||||||  
seq2  AGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGCAGCCACAACA  422

seq1  TACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCAT  499
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCAT  472

seq1  AGCTCTGAGTGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAG  544
      |||||| ||||||||||||||||||| |||||||||||| |||||
seq2  AGCTCTTAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAG  517