BAC Information

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BAC

Clone NameB6Ng01-057C06
Chromosome2 (Build37)
Map Location 104,650,180 - 104,778,473
singlet/doubletdoublet
Overlap geneLOC100042995, 2310047K21Rik, LOC668744, Prrg4
Upstream geneLOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1
Downstream geneCcdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057C06.bB6Ng01-057C06.g
ACCDH879098DH879099
length1,0421,042
definitionDH879098|Mus musculus domesticus DNA, BAC clone: B6Ng01-057C06, 5' end.DH879099|Mus musculus domesticus DNA, BAC clone: B6Ng01-057C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,777,416 - 104,778,473)(104,650,180 - 104,651,227)
sequence
gaattcaatggttagaaccccctggctatgagctccacaataaaaggcac
tatctactacctggtcatttttggtgcccagtacctggtaaagtacagcc
ttatgaaaggataaaaagaggaacaaaactaagtcaccagaaggtaaaaa
agagtcagggagcagctctgtgttgaaaggtctttgcagcgtgggtttct
gttaaatcctgacctgattaggggctttacctaagtttcttcaagctggg
gtcgggagatgggactcacagggacccttccctgctctaccctgtccacg
tatcatgtttgactgtattgtgtagtatgtcacttgtactatgtcaccat
caagacaaaatatgtccttagacctattcaagggtcattcatatgaagga
atttctcttgttttgaaaatactctgtaattatccagatagttacgtggt
gtatatatgaaaacaactaaaattagctaataataataaattacttacat
caaaattaacatactctttgttgaaaatattttggcaggaaaatgtgata
ctttttttcaacacatacaaaaaaaaagaaaataagtaaattaagaatat
aagttgggctggtgagatggctcagtgggtaagagcacccgactgttctt
ccgaaggtccggagttcaaatcccagcaaccagatggtggctcacaacca
tctgtaacaagatctgacgccctcttctggagtgtctgaagacagctaca
gtgtacttacatataataaatatagatgtctgaagacagctacagtgtac
ttacatataataaataaataaatctttttaaaaaaagaatataagttagt
tacagatacaatttgcaaaaaacttgaaactcaagaagaacgaagaccaa
gtgtgccttcttaaattgggaacaaacacccccgaagaagttacagagac
aagttggagctgaaacaaaggatgaccatctggagactgccatacccggg
gatcatccataatcagctcaaatgcgacccattgctacacta
gaattcacagagatccgcctgcctctgcctccagtgttggaattaaaggt
ctgtacagccaccgccaccatcaccaccaggcaaggatcacaccacgttg
taagtccagctccaagggttttgacacctcttacagcatctgcaatcact
tacatacatactgacacctacacataattaaaaataaatttggtggtcag
gaaagctctgtgaaacaagttgccaagaaagataagattcacatcagtgt
tttcagcatggtccttaaataagcagcaacagaattacctaggagcacgt
taggaatgtaaattatagggctgtatcccagatgtacggattcagaagct
ctggagctgggccagcagtcagtgtgttcagcaagtccctcaagtgattc
tgagggcccactaagctctatcagggaagagaactgccaaactccttgcc
ttagtacatttgcataggctgcctacctgctgcttcctcaaagaggaaat
ggttttacttaaatggtcctttgcctccctactggctaggaagttaagct
caacagggacaaagaattttgccagacacatggtaacacacagagagaag
tggtggcctgtatctgttacctcagtactgtaggaggcaaaacagacaga
tccctagactcattggccagccagatagttgaactatgagctccaggttc
agtgacagaccctgtcagaaaacacctgggaaagagccgaaatgcccaca
aacagcaaggacaactccaggtgaaaacaacagccagcagaagtcagaac
ttcagcctgcttctggagaaaacgccaacctgactgcagggactgtgcaa
catgagaacatgtgataagacttgagaattagggctggtgagatggctca
gcagtaagagcagtgactgccttttaaagtcctgagttcaaatctcagca
acacctggtggctcaaaccactgtaatgaaatctatacgccctctttggt
gcgtctgagaacagcacacatgtactttttgtttataataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_104777416_104778473
seq2: B6Ng01-057C06.b_48_1089 (reverse)

seq1  TAGTGTATGCAATGGTGTCAGCATTTGGAGGCTGATTATGGGATGGATCC  50
      ||||||| ||||||| ||| |||||||   ||||||||| |||| |||||
seq2  TAGTGTA-GCAATGG-GTC-GCATTTG--AGCTGATTAT-GGAT-GATCC  43

seq1  CCGGGTATGGCAGTCTCCAGATGGTCCATCCTTTTGTCTCAGCTCCAAAC  100
      ||||||||||||||||||||||||| ||||| ||||| ||||||||||  
seq2  CCGGGTATGGCAGTCTCCAGATGGT-CATCC-TTTGTTTCAGCTCCAA--  89

seq1  TTTGTCTCTGTAACTTCTTCCGTGGGTGTTTTGTTCCCAATTCTAAGAAG  150
       |||||||||||||||||| || ||||| ||||||||||||| |||||||
seq2  CTTGTCTCTGTAACTTCTT-CGGGGGTG-TTTGTTCCCAATT-TAAGAAG  136

seq1  GCACACTTTGGTCTTCGTTCTTCTTGAGTTTCAAGTTTTTTGCAAATTGT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAC-TTGGTCTTCGTTCTTCTTGAGTTTCAAGTTTTTTGCAAATTGT  185

seq1  ATCTTGTAACTAACTTATATTCTTTTTTTAAAAAGATTTATTTATTTATT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATC-TGTAACTAACTTATATTCTTTTTTTAAAAAGATTTATTTATTTATT  234

seq1  ATATGTAAGTACACTGTAGCTGTCTTCAGACATCTATATTTATTATATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGTACACTGTAGCTGTCTTCAGACATCTATATTTATTATATGT  284

seq1  AAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTT  334

seq1  GTTACAGATGGTTGTGAGCCACCATCTGGTTGCTGGGATTTGAACTCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGATGGTTGTGAGCCACCATCTGGTTGCTGGGATTTGAACTCCGG  384

seq1  ACCTTCGGAAGAACAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCGGAAGAACAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAG  434

seq1  CCCAACTTATATTCTTAATTTACTTATTTTCTTTTTTTTTGTATGTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTATATTCTTAATTTACTTATTTTCTTTTTTTTTGTATGTGTTG  484

seq1  AAAAAAAGTATCACATTTTCCTGCCAAAATATTTTCAACAAAGAGTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTATCACATTTTCCTGCCAAAATATTTTCAACAAAGAGTATGT  534

seq1  TAATTTTGATGTAAGTAATTTATTATTATTAGCTAATTTTAGTTGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGATGTAAGTAATTTATTATTATTAGCTAATTTTAGTTGTTTTC  584

seq1  ATATATACACCACGTAACTATCTGGATAATTACAGAGTATTTTCAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACACCACGTAACTATCTGGATAATTACAGAGTATTTTCAAAACA  634

seq1  AGAGAAATTCCTTCATATGAATGACCCTTGAATAGGTCTAAGGACATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATTCCTTCATATGAATGACCCTTGAATAGGTCTAAGGACATATT  684

seq1  TTGTCTTGATGGTGACATAGTACAAGTGACATACTACACAATACAGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGATGGTGACATAGTACAAGTGACATACTACACAATACAGTCAA  734

seq1  ACATGATACGTGGACAGGGTAGAGCAGGGAAGGGTCCCTGTGAGTCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATACGTGGACAGGGTAGAGCAGGGAAGGGTCCCTGTGAGTCCCAT  784

seq1  CTCCCGACCCCAGCTTGAAGAAACTTAGGTAAAGCCCCTAATCAGGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGACCCCAGCTTGAAGAAACTTAGGTAAAGCCCCTAATCAGGTCAG  834

seq1  GATTTAACAGAAACCCACGCTGCAAAGACCTTTCAACACAGAGCTGCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAACAGAAACCCACGCTGCAAAGACCTTTCAACACAGAGCTGCTCC  884

seq1  CTGACTCTTTTTTACCTTCTGGTGACTTAGTTTTGTTCCTCTTTTTATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTTTTTTACCTTCTGGTGACTTAGTTTTGTTCCTCTTTTTATCC  934

seq1  TTTCATAAGGCTGTACTTTACCAGGTACTGGGCACCAAAAATGACCAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAGGCTGTACTTTACCAGGTACTGGGCACCAAAAATGACCAGGT  984

seq1  AGTAGATAGTGCCTTTTATTGTGGAGCTCATAGCCAGGGGGTTCTAACCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATAGTGCCTTTTATTGTGGAGCTCATAGCCAGGGGGTTCTAACCA  1034

seq1  TTGAATTC  1058
      ||||||||
seq2  TTGAATTC  1042

seq1: chr2_104650180_104651227
seq2: B6Ng01-057C06.g_69_1110

seq1  GAATTCACAGAGATCCGCCTGCCTCTGCCTCCAGTGTTGGAATTAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGATCCGCCTGCCTCTGCCTCCAGTGTTGGAATTAAAGGT  50

seq1  CTGTACAGCCACCGCCACCATCACCACCAGGCAAGGATCACACCACGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGCCACCGCCACCATCACCACCAGGCAAGGATCACACCACGTTG  100

seq1  TAAGTCCAGCTCCAAGGGTTTTGACACCTCTTACAGCATCTGCAATCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCAGCTCCAAGGGTTTTGACACCTCTTACAGCATCTGCAATCACT  150

seq1  TACATACATACTGACACCTACACATAATTAAAAATAAATTTGGTGGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACTGACACCTACACATAATTAAAAATAAATTTGGTGGTCAG  200

seq1  GAAAGCTCTGTGAAACAAGTTGCCAAGAAAGATAAGATTCACATCAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCTGTGAAACAAGTTGCCAAGAAAGATAAGATTCACATCAGTGT  250

seq1  TTTCAGCATGGTCCTTAAATAAGCAGCAACAGAATTACCTAGGAGCACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCATGGTCCTTAAATAAGCAGCAACAGAATTACCTAGGAGCACGT  300

seq1  TAGGAATGTAAATTATAGGGCTGTATCCCAGATGTACGGATTCAGAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGTAAATTATAGGGCTGTATCCCAGATGTACGGATTCAGAAGCT  350

seq1  CTGGAGCTGGGCCAGCAGTCAGTGTGTTCAGCAAGTCCCTCAAGTGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTGGGCCAGCAGTCAGTGTGTTCAGCAAGTCCCTCAAGTGATTC  400

seq1  TGAGGGCCCACTAAGCTCTATCAGGGAAGAGAACTGCCAAACTCCTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCCACTAAGCTCTATCAGGGAAGAGAACTGCCAAACTCCTTGCC  450

seq1  TTAGTACATTTGCATAGGCTGCCTACCTGCTGCTTCCTCAAAGAGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACATTTGCATAGGCTGCCTACCTGCTGCTTCCTCAAAGAGGAAAT  500

seq1  GGTTTTACTTAAATGGTCCTTTGCCTCCCTACTGGCTAGGAAGTTAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACTTAAATGGTCCTTTGCCTCCCTACTGGCTAGGAAGTTAAGCT  550

seq1  CAACAGGGACAAAGAATTTTGCCAGACACATGGTAACACACAGAGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGACAAAGAATTTTGCCAGACACATGGTAACACACAGAGAGAAG  600

seq1  TGGTGGCCTGTATCTGTTACCTCAGTACTGTAGGAGGCAAAACAGACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCTGTATCTGTTACCTCAGTACTGTAGGAGGCAAAACAGACAGA  650

seq1  TCCCTAGACTCATTGGCCAGCCAGATAGTTGAACTATGAGCTCCAGGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGACTCATTGGCCAGCCAGATAGTTGAACTATGAGCTCCAGGTTC  700

seq1  AGTGACAGACCCTGTCAGAAAACACCTGGGAAAGAGCCGAAATGCCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGACCCTGTCAGAAAACACCTGGGAAAGAGCCGAAATGCCCACA  750

seq1  AACAGCAAGGACAACTCCAGGTGAAAACAACAGCCAGCAGAAGTCAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAGGACAACTCCAGGTGAAAACAACAGCCAGCAGAAGTCAGAAC  800

seq1  TTCAGCCTGCTTCTGGAGAAAACGCCAACCTGACTGCAGGGACTGTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTGCTTCTGGAGAAAACGCCAACCTGACTGCAGGGACTGTGCAA  850

seq1  CATGAGAAACATGTGATAAGACTTGAGAATTAGGGCTGGTGAGATGGCTC  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAG-AACATGTGATAAGACTTGAGAATTAGGGCTGGTGAGATGGCTC  899

seq1  AGCAGGTAAGAGCAGTGACTGCCCTTTCAAAGGTCCTGAGTTCAAATCCC  950
      |||| |||||||||||||||||| |||  || |||||||||||||||| |
seq2  AGCA-GTAAGAGCAGTGACTGCCTTTT--AAAGTCCTGAGTTCAAATCTC  946

seq1  AGCAACCACATGGTGGCTCACAACCACCTGTAATGAGATCT-GACGCCCT  999
      ||||| ||| |||||||||| ||||| ||||||||| ||||  |||||||
seq2  AGCAA-CACCTGGTGGCTCA-AACCA-CTGTAATGAAATCTATACGCCCT  993

seq1  CTTCTGGTGCGTCTGAAGACAGCTACACAATGTAC---TTATGTATAATA  1046
      ||| ||||||||||||  ||||| |||| ||||||   || | |||||||
seq2  CTT-TGGTGCGTCTGAGAACAGC-ACAC-ATGTACTTTTTGTTTATAATA  1040

seq1  AT  1048
      ||
seq2  AT  1042