BAC Information

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BAC

Clone NameB6Ng01-058D09
Chromosome2 (Build37)
Map Location 83,487,498 - 83,666,895
singlet/doubletdoublet
Overlap geneZc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
Downstream geneZswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058D09.bB6Ng01-058D09.g
ACCDH879852DH879853
length1,061708
definitionDH879852|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D09, 5' end.DH879853|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,487,498 - 83,488,566)(83,666,188 - 83,666,895)
sequence
gaattccaggtcaaccttgggtgcagtacaaaatcctgtcttaaagaaca
aaagaaaaataagtataattcttgacttgggttgggggtgtgtttggatt
tagggcaagcagattaaaaaaaaaaaatatgtcctctgaggacatgcagc
tctgaagaatagtaatctagactgcagaaaggacccaggattgtaaagag
aactgagaaactattagttgctggtgaatttcttctgaggtacacagttg
attgcttgaagctgaatacttgcaaagtgtctctgtttcataaatagcca
acaaaatatattaggttgtgtcttcagagacaggactactgagttattgc
ggtgtcagcttctgcctaccctagggtcccaagtaataaaacctacttac
ctgagaagaacaccgtcagcgttggcttttttcctgcttcgtttttaata
cctttaaggagcggaagctggcctgtaaaaggagtaggattgcttaaggg
tcagaggagaaaggaggtcagggttgttaagactacaattaggtatgtgg
agagggaagcagtcctttccttacagcctcttctgagctccttttcaatc
gtcttcggaattcatccactgaaatacaccctttttccctgtaacttttg
aaaccttatacattcagttattttgtagtttcggattcactctaacctcc
ctttcctacctaatactttcccactcctaaacctgtgccaacttttaggt
aaaattttttcccaagcccaggaaaggctttattgataattaggttgtaa
accatccaacttttaagatgtactagtgttatttcagtatgttctgttta
gaagactttgtaactgggggtgtagctcagttagaatgcatgcctagcac
acatgaagccccacgttactctataggacggcaagaactgggtggctgtg
ggaatgtttctgtatttctagcactgtggagattgaagcaaggaatcagt
tcaggtcatcctcgccttattttcagtttagggcagcatgggatcccttg
gggcttggggt
gaattcatcctcatgagttatccaatcaggtgatttacaaaagcaacccg
caaggatggaaggcatccaaccagaccttaattgacacgaaatacccact
tccatatctgaccttcctcctttctgctcacagaatacctgatagcaggt
aaggaccaaggctgacgtcaccaactccgtcaccaatatgggaggagggg
gaagaaaagaacagtgcagatgtgtatacatccaccatgaaagttttaca
cagggcaggggaaaatcgcctgagacttgtgaaatggtgaccaaacaaga
aaacaagcaggaagcaaggcagagagtaatacagccagaatactgtctta
aagtatactaaagaatactgcctaatactggcgtaccatactgggtgggc
atgaaggtataaatgtgctatgtaaccaatgtaacaagcaaagagaatct
taagaatctgctacacacccaaactgtaagactcaccagtaagattcatt
tgttatgtttttttcttcactgacttttacatcgttcttttccaaagttt
gtaataatggttgtgtttcaaaacttatctgctgaaaaaagttaactaga
tattgagagaaggtaagtatttttagatgtgtgcaattttcaaatggctc
agcagagcagggctagccagtgtgtgtgtttgtgtgtgtgtgtgtgtgtg
tgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83487498_83488566
seq2: B6Ng01-058D09.b_45_1104

seq1  GAATTCCAGGTCAACCTTGGGTGCAGTACAAAATCCTGTCTTAAAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAACCTTGGGTGCAGTACAAAATCCTGTCTTAAAGAACA  50

seq1  AAAGAAAAATAAGTATAATTCTTGACTTGGGTTGGGGGTGTGTTTGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATAAGTATAATTCTTGACTTGGGTTGGGGGTGTGTTTGGATT  100

seq1  TAGGGCAAGCAGATTAAAAAAAAAAAATATGTCCTCTGAGGACATGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAAGCAGATTAAAAAAAAAAAATATGTCCTCTGAGGACATGCAGC  150

seq1  TCTGAAGAATAGTAATCTAGACTGCAGAAAGGACCCAGGATTGTAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAATAGTAATCTAGACTGCAGAAAGGACCCAGGATTGTAAAGAG  200

seq1  AACTGAGAAACTATTAGTTGCTGGTGAATTTCTTCTGAGGTACACAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAAACTATTAGTTGCTGGTGAATTTCTTCTGAGGTACACAGTTG  250

seq1  ATTGCTTGAAGCTGAATACTTGCAAAGTGTCTCTGTTTCATAAATAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGAAGCTGAATACTTGCAAAGTGTCTCTGTTTCATAAATAGCCA  300

seq1  ACAAAATATATTAGGTTGTGTCTTCAGAGACAGGACTACTGAGTTATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATATATTAGGTTGTGTCTTCAGAGACAGGACTACTGAGTTATTGC  350

seq1  GGTGTCAGCTTCTGCCTACCCTAGGGTCCCAAGTAATAAAACCTACTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGCTTCTGCCTACCCTAGGGTCCCAAGTAATAAAACCTACTTAC  400

seq1  CTGAGAAGAACACCGTCAGCGTTGGCTTTTTTCCTGCTTCGTTTTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGAACACCGTCAGCGTTGGCTTTTTTCCTGCTTCGTTTTTAATA  450

seq1  CCTTTAAGGAGCGGAAGCTGGCCTGTAAAAGGAGTAGGATTGCTTAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAGGAGCGGAAGCTGGCCTGTAAAAGGAGTAGGATTGCTTAAGGG  500

seq1  TCAGAGGAGAAAGGAGGTCAGGGTTGTTAAGACTACAATTAGGTATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAGAAAGGAGGTCAGGGTTGTTAAGACTACAATTAGGTATGTGG  550

seq1  AGAGGGAAGCAGTCCTTTCCTTACAGCCTCTTCTGAGCTCCTTTTCAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGCAGTCCTTTCCTTACAGCCTCTTCTGAGCTCCTTTTCAATC  600

seq1  GTCTTCGGAATTCATCCACTGAAATACACCCTTTTTCCCTGTAACTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCGGAATTCATCCACTGAAATACACCCTTTTTCCCTGTAACTTTTG  650

seq1  AAACCTTATACATTCAGTTATTTTGTAGTTTCGGATTCACTCTAACCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTATACATTCAGTTATTTTGTAGTTTCGGATTCACTCTAACCTCC  700

seq1  CTTTCCTACCTAATACTTTCCCACTCCTAAACCTGTGCCAACTTTTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTACCTAATACTTTCCCACTCCTAAACCTGTGCCAACTTTTAGGT  750

seq1  AAAATTTTTTCCCAAGCCCAGGGAAAGGCTTTATTGATAATTTAGGTTGT  800
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  AAAATTTTTTCCCAAGCCCA-GGAAAGGCTTTATTGATAA-TTAGGTTGT  798

seq1  AAACCATCCAACTTTTAAGATGTACTAGTGTTATTTCAGTATGTTCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCCAACTTTTAAGATGTACTAGTGTTATTTCAGTATGTTCTGTT  848

seq1  TAGAAGACTTTGTAACTGGGGGTGTAGCTCAGTTAGAATGCATGCCTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACTTTGTAACTGGGGGTGTAGCTCAGTTAGAATGCATGCCTAGC  898

seq1  ACACATGAAGCCCCACGTTACTCTATAGGACGGCAGGAACTGGGTGGCTG  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACACATGAAGCCCCACGTTACTCTATAGGACGGCAAGAACTGGGTGGCTG  948

seq1  TGGGAATGTTTCTGTAATTCTAGCACTGTGGAGATAGAAGCAAGGAAATC  1000
      |||||||||||||||| |||||||||||||||||| ||||||||| ||||
seq2  TGGGAATGTTTCTGTATTTCTAGCACTGTGGAGATTGAAGCAAGG-AATC  997

seq1  AGGTTCAAGGTCATCTTCAGCTATATATTCAGTTTAAGGACAGCATGGGA  1050
      | |||| |||||||| || ||  ||| |||||||| ||| ||||||||||
seq2  A-GTTC-AGGTCATCCTC-GCCTTATTTTCAGTTT-AGGGCAGCATGGGA  1043

seq1  TCCATGTGGGGGCTTGGGG  1069
      |||   | |||||||||||
seq2  TCC--CTTGGGGCTTGGGG  1060

seq1: chr2_83666188_83666895
seq2: B6Ng01-058D09.g_67_774 (reverse)

seq1  CACACACACACACACACACACACACACAAACACACACACTGGCTAGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAAACACACACACTGGCTAGCCCT  50

seq1  GCTCTGCTGAGCCATTTGAAAATTGCACACATCTAAAAATACTTACCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTGAGCCATTTGAAAATTGCACACATCTAAAAATACTTACCTTC  100

seq1  TCTCAATATCTAGTTAACTTTTTTCAGCAGATAAGTTTTGAAACACAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATATCTAGTTAACTTTTTTCAGCAGATAAGTTTTGAAACACAACC  150

seq1  ATTATTACAAACTTTGGAAAAGAACGATGTAAAAGTCAGTGAAGAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACAAACTTTGGAAAAGAACGATGTAAAAGTCAGTGAAGAAAAAA  200

seq1  ACATAACAAATGAATCTTACTGGTGAGTCTTACAGTTTGGGTGTGTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAAATGAATCTTACTGGTGAGTCTTACAGTTTGGGTGTGTAGCA  250

seq1  GATTCTTAAGATTCTCTTTGCTTGTTACATTGGTTACATAGCACATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTAAGATTCTCTTTGCTTGTTACATTGGTTACATAGCACATTTAT  300

seq1  ACCTTCATGCCCACCCAGTATGGTACGCCAGTATTAGGCAGTATTCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATGCCCACCCAGTATGGTACGCCAGTATTAGGCAGTATTCTTTA  350

seq1  GTATACTTTAAGACAGTATTCTGGCTGTATTACTCTCTGCCTTGCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTTTAAGACAGTATTCTGGCTGTATTACTCTCTGCCTTGCTTCCT  400

seq1  GCTTGTTTTCTTGTTTGGTCACCATTTCACAAGTCTCAGGCGATTTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTTCTTGTTTGGTCACCATTTCACAAGTCTCAGGCGATTTTCCC  450

seq1  CTGCCCTGTGTAAAACTTTCATGGTGGATGTATACACATCTGCACTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTGTAAAACTTTCATGGTGGATGTATACACATCTGCACTGTTC  500

seq1  TTTTCTTCCCCCTCCTCCCATATTGGTGACGGAGTTGGTGACGTCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCCCCTCCTCCCATATTGGTGACGGAGTTGGTGACGTCAGCCT  550

seq1  TGGTCCTTACCTGCTATCAGGTATTCTGTGAGCAGAAAGGAGGAAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTTACCTGCTATCAGGTATTCTGTGAGCAGAAAGGAGGAAGGTCA  600

seq1  GATATGGAAGTGGGTATTTCGTGTCAATTAAGGTCTGGTTGGATGCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGAAGTGGGTATTTCGTGTCAATTAAGGTCTGGTTGGATGCCTTC  650

seq1  CATCCTTGCGGGTTGCTTTTGTAAATCACCTGATTGGATAACTCATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGCGGGTTGCTTTTGTAAATCACCTGATTGGATAACTCATGAGG  700

seq1  ATGAATTC  708
      ||||||||
seq2  ATGAATTC  708