BAC Information

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BAC

Clone NameB6Ng01-058D12
Chromosome2 (Build37)
Map Location 130,099,589 - 130,252,403
singlet/doubletdoublet
Overlap geneNol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16
Upstream geneCkap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2
Downstream genePtpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058D12.bB6Ng01-058D12.g
ACCDH879856DH879857
length1,059647
definitionDH879856|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D12, 5' end.DH879857|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,251,333 - 130,252,403)(130,099,589 - 130,100,235)
sequence
gaattcactcagtagtccagactaggcctcaaactcagagatccacctgc
ctctgctaggattaaaggcatgtacctttcagaacccagactctctgtta
cttagcttcctcattactaagttggtatgaatcatgatttagttttatat
ggtggtgataattaagaaactatacataagtacttagcataatatccagt
atataaggaagtcatttttgttagcaacttaggacatacatatcagtccc
aggaggtgtaacacttctaggcccttcttgagtccagcacttctgtgact
cactcacatcttctgaagcattacctatctacccatgaagctgactctcc
atagagtaaacaagaggagctctgtcgtaatgtggtcatcttccttatgc
tctgattttaaaagtctgggtaagcaacaggtatttttacaatagctaat
attttatatttattattttttagccttttaaatatgtatttggggacaga
gtctcatcttgccaaggctggcctctgatatatatccatctaaggctgaa
ctggcaatcctagtcttccagcctccacatgccaagggctatgtgttata
tgaggttgtggatgggacaccacactctgctcattagtattttcagttgc
ttcatattgtacatgtgtctaagagaaatcatgactaaacaaatgtaaca
gagctctagaaattaccacaaggcatcctctgtctagaaaatgcattaca
ttgcaaacaacacaattccatttaaaagtttggctatgagcagaagcaaa
gtcttctgggttttttgttttgttttgttttggtttttttggtttgtttt
ttcgagacagggtttctctgtatagccctggctgtcctggaactcgcttt
gtagaccaggctggccttgaactcagaaatccacctgcctctgcctccca
gtgctgggataaagtgtgcgccaccaccgcccgctcaaatcttctatgaa
atagaacgccaccgcatggctttgggatcttcgggactccaaaaacattc
ttaccattt
gaattctgggcctacgcggccatgagcaaccacgtggtgccgagcagcgc
tgggttctatgaatcagggaaaggaacagaactaggaagaggtaaaccgc
tcttgtctatgcctcagcccgcaccaacaattttgttaacaacaaaatgt
aaaaggaagaggcaggcagcaagaagacgccatttctgcagggtctgagg
ccgggtcccacgaggacccggaatatctgggcagcgggaaacctgcgagg
cttatcaggaagcctcatgtcccctcaccgagttctgccgcccggcacac
gggtgacaaaagcacgaggaacgaagaagggtggtctccaggccactctg
cggcctgccggcaggagcgacaccattcactacagacgcagtaccggctc
gcgcagccgcagaggctgggcttggcaggcccgctcgcgcccgtggtagt
ccaacccgcccgacggacgataccacacccgcgaaccccctccgaagacc
tgacaatggtttcgtccgcagcctctgattggtcaaaccggagaaggtgt
ggtctccgcagtctggttccgcgcgccagagcgcgctagccgcattgcga
gctgggcacggagcaggcgccatggtgaggagtggtggtggggtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130251333_130252403
seq2: B6Ng01-058D12.b_48_1106 (reverse)

seq1  AAATGGTAAAGAATGTTTTATTGATGTACCCGAAGATCACAAAGACATTG  50
      ||||||| ||||||||||  |||  || |||||||||| ||||| || ||
seq2  AAATGGT-AAGAATGTTT--TTGGAGT-CCCGAAGATCCCAAAGCCA-TG  45

seq1  CGTTGGCGTCTTATTTCAATAGAAGACTTTGAGCCGGGCGGTGGTGGCGC  100
      || ||||||  |||||| |||||||| |||||| ||||||||||||||||
seq2  CGGTGGCGTTCTATTTC-ATAGAAGA-TTTGAG-CGGGCGGTGGTGGCGC  92

seq1  ACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGT  150
      ||||  || |||||||||| ||||||||||||||||||||||||||||||
seq2  ACAC--TTTATCCCAGCAC-TGGGAGGCAGAGGCAGGTGGATTTCTGAGT  139

seq1  TCAAGGCCAGCCTGGTCTACAAAGCGAGTTCCAGGACAGCCAGGGCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGCCTGGTCTACAAAGCGAGTTCCAGGACAGCCAGGGCTATA  189

seq1  CAGAGAAACCCTGTCTCGAAAAAACAAACCAAAAAAACCAAAACAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAAAAACAAACCAAAAAAACCAAAACAAAACA  239

seq1  AAACAAAAAAACCCAGAAGACTTTGCTTCTGCTCATAGCCAAACTTTTAA  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAC-AAAAAACCCAGAAGACTTTGCTTCTGCTCATAGCCAAACTTTTAA  288

seq1  ATGGAATTGTGTTGTTTGCAATGTAATGCATTTTCTAGACAGAGGATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATTGTGTTGTTTGCAATGTAATGCATTTTCTAGACAGAGGATGCC  338

seq1  TTGTGGTAATTTCTAGAGCTCTGTTACATTTGTTTAGTCATGATTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTAATTTCTAGAGCTCTGTTACATTTGTTTAGTCATGATTTCTCT  388

seq1  TAGACACATGTACAATATGAAGCAACTGAAAATACTAATGAGCAGAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACATGTACAATATGAAGCAACTGAAAATACTAATGAGCAGAGTGT  438

seq1  GGTGTCCCATCCACAACCTCATATAACACATAGCCCTTGGCATGTGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCCATCCACAACCTCATATAACACATAGCCCTTGGCATGTGGAGG  488

seq1  CTGGAAGACTAGGATTGCCAGTTCAGCCTTAGATGGATATATATCAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGACTAGGATTGCCAGTTCAGCCTTAGATGGATATATATCAGAGG  538

seq1  CCAGCCTTGGCAAGATGAGACTCTGTCCCCAAATACATATTTAAAAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTGGCAAGATGAGACTCTGTCCCCAAATACATATTTAAAAGGCT  588

seq1  AAAAAATAATAAATATAAAATATTAGCTATTGTAAAAATACCTGTTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAATAAATATAAAATATTAGCTATTGTAAAAATACCTGTTGCTT  638

seq1  ACCCAGACTTTTAAAATCAGAGCATAAGGAAGATGACCACATTACGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACTTTTAAAATCAGAGCATAAGGAAGATGACCACATTACGACAG  688

seq1  AGCTCCTCTTGTTTACTCTATGGAGAGTCAGCTTCATGGGTAGATAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCTTGTTTACTCTATGGAGAGTCAGCTTCATGGGTAGATAGGTA  738

seq1  ATGCTTCAGAAGATGTGAGTGAGTCACAGAAGTGCTGGACTCAAGAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCAGAAGATGTGAGTGAGTCACAGAAGTGCTGGACTCAAGAAGGG  788

seq1  CCTAGAAGTGTTACACCTCCTGGGACTGATATGTATGTCCTAAGTTGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAGTGTTACACCTCCTGGGACTGATATGTATGTCCTAAGTTGCTA  838

seq1  ACAAAAATGACTTCCTTATATACTGGATATTATGCTAAGTACTTATGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATGACTTCCTTATATACTGGATATTATGCTAAGTACTTATGTAT  888

seq1  AGTTTCTTAATTATCACCACCATATAAAACTAAATCATGATTCATACCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTAATTATCACCACCATATAAAACTAAATCATGATTCATACCAA  938

seq1  CTTAGTAATGAGGAAGCTAAGTAACAGAGAGTCTGGGTTCTGAAAGGTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAATGAGGAAGCTAAGTAACAGAGAGTCTGGGTTCTGAAAGGTAC  988

seq1  ATGCCTTTAATCCTAGCAGAGGCAGGTGGATCTCTGAGTTTGAGGCCTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTAATCCTAGCAGAGGCAGGTGGATCTCTGAGTTTGAGGCCTAG  1038

seq1  TCTGGACTACTGAGTGAATTC  1071
      |||||||||||||||||||||
seq2  TCTGGACTACTGAGTGAATTC  1059

seq1: chr2_130099589_130100235
seq2: B6Ng01-058D12.g_68_714

seq1  GAATTCTGGGCCTACGCGGCCATGAGCAACCACGTGGTGCCGAGCAGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCCTACGCGGCCATGAGCAACCACGTGGTGCCGAGCAGCGC  50

seq1  TGGGTTCTATGAATCAGGGAAAGGAACAGAACTAGGAAGAGGTAAACCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTATGAATCAGGGAAAGGAACAGAACTAGGAAGAGGTAAACCGC  100

seq1  TCTTGTCTATGCCTCAGCCCGCACCAACAATTTTGTTAACAACAAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTATGCCTCAGCCCGCACCAACAATTTTGTTAACAACAAAATGT  150

seq1  AAAAGGAAGAGGCAGGCAGCAAGAAGACGCCATTTCTGCAGGGTCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGAGGCAGGCAGCAAGAAGACGCCATTTCTGCAGGGTCTGAGG  200

seq1  CCGGGTCCCACGAGGACCCGGAATATCTGGGCAGCGGGAAACCTGCGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTCCCACGAGGACCCGGAATATCTGGGCAGCGGGAAACCTGCGAGG  250

seq1  CTTATCAGGAAGCCTCATGTCCCCTCACCGAGTTCTGCCGCCCGGCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAGGAAGCCTCATGTCCCCTCACCGAGTTCTGCCGCCCGGCACAC  300

seq1  GGGTGACAAAAGCACGAGGAACGAAGAAGGGTGGTCTCCAGGCCACTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACAAAAGCACGAGGAACGAAGAAGGGTGGTCTCCAGGCCACTCTG  350

seq1  CGGCCTGCCGGCAGGAGCGACACCATTCACTACAGACGCAGTACCGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGCCGGCAGGAGCGACACCATTCACTACAGACGCAGTACCGGCTC  400

seq1  GCGCAGCCGCAGAGGCTGGGCTTGGCAGGCCCGCTCGCGCCCGTGGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGCCGCAGAGGCTGGGCTTGGCAGGCCCGCTCGCGCCCGTGGTAGT  450

seq1  CCAACCCGCCCGACGGACGATACCACACCCGCGAACCCCCTCCGAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCGCCCGACGGACGATACCACACCCGCGAACCCCCTCCGAAGACC  500

seq1  TGACAATGGTTTCGTCCGCAGCCTCTGATTGGTCAAACCGGAGAAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGGTTTCGTCCGCAGCCTCTGATTGGTCAAACCGGAGAAGGTGT  550

seq1  GGTCTCCGCAGTCTGGTTCCGCGCGCCAGAGCGCGCTAGCCGCATTGCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCGCAGTCTGGTTCCGCGCGCCAGAGCGCGCTAGCCGCATTGCGA  600

seq1  GCTGGGCACGGAGCAGGCGCCATGGTGAGGAGTGGTGGTGGGGTATT  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCACGGAGCAGGCGCCATGGTGAGGAGTGGTGGTGGGGTATT  647