BAC Information

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BAC

Clone NameB6Ng01-058D13
Chromosome2 (Build37)
Map Location 164,761,927 - 164,888,224
singlet/doubletdoublet
Overlap geneMmp9, Slc12a5, Ncoa5, Cd40
Upstream geneYwhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777
Downstream geneCdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058D13.bB6Ng01-058D13.g
ACCDH879858DH879859
length550923
definitionDH879858|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D13, 5' end.DH879859|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,761,927 - 164,762,482)(164,887,297 - 164,888,224)
sequence
caggacatcagaactatacagagaaaccctgtctcaaaaaaaccaaaacc
gccgggcagtggtggcatactcctttaatcccagcacttggaaggtagag
gcaggtggatttctgagttcaaggccagcctggtctacagagtgagttcc
agcacagccagggctacacagagaaacccccaccctcccacacacataca
cagggtctcagaaatgaacccaggattttgtttttaacaggagtggtgag
gccaattgtagagtttgttttgttgggtgtagtggcttgcacctttaatc
ccaggaagcaaaagcgggcagatctcttaggccagcctagtctacctaga
gagttacaggttagccaagactatccagtgagaccatacttttaaaataa
gtaaataaattaaaaaataaagaaggggtgggggaaagagattgctattt
accgttcgctggatgaacagttttggcagtcctcctgcctcagcttcctg
agtgctgggactacaggaacaaacaagtggctgtggggtggtgtgtgtgt

cctgagtcacatgggtggcattgggtcttctcaagagctgtgcagtggct
tgtcagtcggcttcctgaaaaacaggaggatatgaggcaggttgggccaa
tcctgtgacacagactgtgtcacaacccagggagccaggactggaggtga
gagggttggagtttgggaatggatatctcagaccctacacgagtaaggaa
gatggaagagacgggacagcttggggtattctggcatcaaggaagaggga
gaaatgggtcattttagacttgagttcacagtctatatatggggtctgca
tccaccagcaatccaagagggaaagggtcttggtacggggcaggagggct
agcatctcacctggctggcacaaatcacagcactggccatcgtggaggta
ctgtttgtcactgcacgtaacacactgccctagatggacctaaaaacaga
agtggacagctggaagggatcttccaccggcatgttgaaagttagccaag
acgcaggctgtagctgatgtggaaatccaaagcagaaaagtgagccccca
gagtgtgaggtctatttttttttttactctgttgtcacatcgtcttactg
ccatctaccaaagcaagaacgcagaacccctctaatccgaacagatgcac
aggactcttcagtgctcccaaaggacgcagcaggtaggggagaactccag
ttctttcctccagagtcccgagactgctggctcaagctggcctcaccctt
tctcccggtttctgtccccagctccctgccccaaagagaatagaataccc
cacagagggcaacactgaaactgattccacaggggcgggactctaacatg
ttttccacacatccggggacacccttgctaagaactgcttcctgctaatt
aagcaccttctttaactgaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164761927_164762482
seq2: B6Ng01-058D13.b_45_600

seq1  GAATTCCAGGACATCAGAACTATACAGAGAAACCCTGTCTCAAAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACATCAGAACTATACAGAGAAACCCTGTCTCAAAAAAACC  50

seq1  AAAACCGCCGGGCAGTGGTGGCATACTCCTTTAATCCCAGCACTTGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCGCCGGGCAGTGGTGGCATACTCCTTTAATCCCAGCACTTGGAAG  100

seq1  GTAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTG  150

seq1  AGTTCCAGCACAGCCAGGGCTACACAGAGAAACCCCCACCCTCCCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGCACAGCCAGGGCTACACAGAGAAACCCCCACCCTCCCACACA  200

seq1  CATACACAGGGTCTCAGAAATGAACCCAGGATTTTGTTTTTAACAGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGGGTCTCAGAAATGAACCCAGGATTTTGTTTTTAACAGGAGT  250

seq1  GGTGAGGCCAATTGTAGAGTTTGTTTTGTTGGGTGTAGTGGCTTGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGCCAATTGTAGAGTTTGTTTTGTTGGGTGTAGTGGCTTGCACCT  300

seq1  TTAATCCCAGGAAGCAAAAGCGGGCAGATCTCTTAGGCCAGCCTAGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGGAAGCAAAAGCGGGCAGATCTCTTAGGCCAGCCTAGTCTA  350

seq1  CCTAGAGAGTTACAGGTTAGCCAAGACTATCCAGTGAGACCATACTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAGTTACAGGTTAGCCAAGACTATCCAGTGAGACCATACTTTTA  400

seq1  AAATAAGTAAATAAATTAAAAAATAAAGAAGGGGTGGGGGAAAGAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTAAATAAATTAAAAAATAAAGAAGGGGTGGGGGAAAGAGATTG  450

seq1  CTATTTACCGTTCGCTGGATGAACAGTTTTGGCAGTCCTCCTGCCTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACCGTTCGCTGGATGAACAGTTTTGGCAGTCCTCCTGCCTCAGC  500

seq1  TTCCTGAGTGCTGGGACTACAGGAACAAACAAGTGGCTGTGGGGTGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGTGCTGGGACTACAGGAACAAACAAGTGGCTGTGGGGTGGTGT  550

seq1  GTGTGT  556
      ||||||
seq2  GTGTGT  556

seq1: chr2_164887297_164888224
seq2: B6Ng01-058D13.g_75_997 (reverse)

seq1  GATTTACAGTTAAAAGAAGTGTGCTTAAATTAGCAAGAAGCAGCTCATAG  50
      ||||| ||||| ||||||| |||||| |||||||| ||||||| || |||
seq2  GATTT-CAGTT-AAAGAAG-GTGCTT-AATTAGCAGGAAGCAGTTCTTAG  46

seq1  CATGGGTGGTCCCCGGATGTTGTAGAAACACATGTTGAGAGTCCCGCCCC  100
      || |||| ||||||||||| ||| |||| ||||||| |||||||||||||
seq2  CAAGGGT-GTCCCCGGATG-TGTGGAAA-ACATGTT-AGAGTCCCGCCCC  92

seq1  TGTGGACTCTG-TTCAGTGTTGCCCTCTGTGGGGTGATTCTTATCTCTTT  149
      |||||| || | ||||||||||||||||||||||| |||||  |||||||
seq2  TGTGGAATCAGTTTCAGTGTTGCCCTCTGTGGGGT-ATTCTATTCTCTTT  141

seq1  GGTGGCAGGGAGCTGGGGACAGAAACCGGGAGAAGGGCTGAGGCCAGCTT  199
      || ||||||||||||||||||||||||||||||| || ||||||||||||
seq2  GG-GGCAGGGAGCTGGGGACAGAAACCGGGAGAAAGGGTGAGGCCAGCTT  190

seq1  GAGCCAGCAGTCTCGGGACTCTGGAGG-AAGAACTGGAGTTCT-CCCTAC  247
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  GAGCCAGCAGTCTCGGGACTCTGGAGGAAAGAACTGGAGTTCTCCCCTAC  240

seq1  CTGCTGCGT-CTTTGGGAGCACTGAAGAGTCCTGTGCATCTGTTCGGATT  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCGTCCTTTGGGAGCACTGAAGAGTCCTGTGCATCTGTTCGGATT  290

seq1  AGA-GGGTTCTGCGTTCTTGCTTTGGTAGATGGCAGTAAGACGATGTGAC  345
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTTCTGCGTTCTTGCTTTGGTAGATGGCAGTAAGACGATGTGAC  340

seq1  AACAGAGTAAAAAAAAAAATAGACCTCACACTCTGGGGGCTCACTTTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTAAAAAAAAAAATAGACCTCACACTCTGGGGGCTCACTTTTCT  390

seq1  GCTTTGGATTTCCACATCAGCTACAGCCTGCGTCTTGGCTAACTTTCAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGATTTCCACATCAGCTACAGCCTGCGTCTTGGCTAACTTTCAAC  440

seq1  ATGCCGGTGGAAGATCCCTTCCAGCTGTCCACTTCTGTTTTTAGGTCCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGGTGGAAGATCCCTTCCAGCTGTCCACTTCTGTTTTTAGGTCCAT  490

seq1  CTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCA  540

seq1  GTGCTGTGATTTGTGCCAGCCAGGTGAGATGCTAGCCCTCCTGCCCCGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGATTTGTGCCAGCCAGGTGAGATGCTAGCCCTCCTGCCCCGTA  590

seq1  CCAAGACCCTTTCCCTCTTGGATTGCTGGTGGATGCAGACCCCATATATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACCCTTTCCCTCTTGGATTGCTGGTGGATGCAGACCCCATATATA  640

seq1  GACTGTGAACTCAAGTCTAAAATGACCCATTTCTCCCTCTTCCTTGATGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGAACTCAAGTCTAAAATGACCCATTTCTCCCTCTTCCTTGATGC  690

seq1  CAGAATACCCCAAGCTGTCCCGTCTCTTCCATCTTCCTTACTCGTGTAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACCCCAAGCTGTCCCGTCTCTTCCATCTTCCTTACTCGTGTAGG  740

seq1  GTCTGAGATATCCATTCCCAAACTCCAACCCTCTCACCTCCAGTCCTGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGATATCCATTCCCAAACTCCAACCCTCTCACCTCCAGTCCTGGC  790

seq1  TCCCTGGGTTGTGACACAGTCTGTGTCACAGGATTGGCCCAACCTGCCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGTTGTGACACAGTCTGTGTCACAGGATTGGCCCAACCTGCCTC  840

seq1  ATATCCTCCTGTTTTTCAGGAAGCCGACTGACAAGCCACTGCACAGCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCCTGTTTTTCAGGAAGCCGACTGACAAGCCACTGCACAGCTCT  890

seq1  TGAGAAGACCCAATGCCACCCATGTGACTCAGG  928
      |||||||||||||||||||||||||||||||||
seq2  TGAGAAGACCCAATGCCACCCATGTGACTCAGG  923