BAC Information

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BAC

Clone NameB6Ng01-058D17
Chromosome2 (Build37)
Map Location 113,242,724 - 113,390,117
singlet/doubletdoublet
Overlap geneFmn1
Upstream gene2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3, 4930563P21Rik
Downstream geneGrem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058D17.bB6Ng01-058D17.g
ACCDH879866DH879867
length5681,112
definitionDH879866|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D17, 5' end.DH879867|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,389,544 - 113,390,117)(113,242,724 - 113,243,857)
sequence
attccatagaggttcttaaaaagcaggatctagtccacgttgtatgggaa
agatttttcataaaaacaattactagagaacatagggatttatataactt
tgtatatctgatgtgcactctgttgaactaaagaatttagaatcatttaa
gctttaacaataaagaaacctgcaatttttgtctaatttatccttctggt
gctacgtatttaaatatgaattagatttaaaaccagtacacttgaataaa
attatgaagtccttatgattatatcagtgcaaggcacatatattcccagt
catttcttccaaataaataagtcagagctttactccagctaaacacaaag
taaactttcaatcctttgaagtgcccactttgtactcacatgcacctttc
ttgatttgtcagaatcctcaaactcactccacactagccagtgactttac
ttatagacgtgtgttacttcatagtggactcaaattctcatttgcccatt
ctaggccaccttttactatctcctggctggggaagaaagacaacagctgg
tcaccccccccccccccc
gaattcactaataggaaaaataagggtggaaggcctgtttagctgtagac
tgctctaagacttgtgatttctgttgctacttaagaccgtcagactaaaa
agttatcttgccaactatataattattagaaaatgagactatagacatag
gatttccaaatttgtatttttgtgaaaataaaattatttctctttggaaa
gaaaaccttcctgttggccttccaggttatggacaggttaggacattgaa
aacactatcaacattgatttgaatataactatgcatctcccacgtggttt
aggggtgaagaggtacaaagagcctgtcataagacattcatgctcaggat
aatcatgtgaatgaggccttatttaaaaaacacattttttttttccctct
aagatgagggacttaccatcctgactgttggcaaaatacaaagatttgat
tttgttgtgattgaactaagcccttgtagaatatgaagtacaaatcacag
atgaatggtttgtatatactgtttttttagatcttttctagtcgtttctt
cattatctgtggaaaccttgagctcacatttgagtgcagtgcagtgtgtg
tgtgtgtatttgtagaggtcagtggtcagtgttgttgtgtatctttctca
cttgctttctaccctattttgggggactgaatctcactgagcctagaggt
taccaactgggtagcaagtttcaggaaatcacctgttcccacttccctag
aattacaggccgttgtaactggcttttaaaaacattttgttgtttgatgt
ggatactagagatcaaacccagtgtccctttttgagtagcaagcaacttt
tctaccatttcacattctcgaggttatatacatgacagcagtgaagcact
ttatagaaaaggcaaaccctctgctgcaagagagcatgagatggagggac
attgtcatccaaaactcacgatactataagcacctctctgtgtggagcag
tgaaaacacgatgctttagatcagcattcttagatatataataatagaaa
cctaaaagtagtttaaaaagccacaataaactacagatgttcatgcaact
cttagacagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_113389544_113390117
seq2: B6Ng01-058D17.b_45_618 (reverse)

seq1  GGGGGGGGGGGGGGGTGACCAGCTGTTGTCTTTCTTCCCCAGCCAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGGGGGTGACCAGCTGTTGTCTTTCTTCCCCAGCCAGGAGA  50

seq1  TAGTAAAAGGTGGCCTAGAATGGGCAAATGAGAATTTGAGTCCACTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAGGTGGCCTAGAATGGGCAAATGAGAATTTGAGTCCACTATGA  100

seq1  AGTAACACACGTCTATAAGTAAAGTCACTGGCTAGTGTGGAGTGAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACACACGTCTATAAGTAAAGTCACTGGCTAGTGTGGAGTGAGTTTG  150

seq1  AGGATTCTGACAAATCAAGAAAGGTGCATGTGAGTACAAAGTGGGCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTGACAAATCAAGAAAGGTGCATGTGAGTACAAAGTGGGCACTT  200

seq1  CAAAGGATTGAAAGTTTACTTTGTGTTTAGCTGGAGTAAAGCTCTGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATTGAAAGTTTACTTTGTGTTTAGCTGGAGTAAAGCTCTGACTT  250

seq1  ATTTATTTGGAAGAAATGACTGGGAATATATGTGCCTTGCACTGATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGGAAGAAATGACTGGGAATATATGTGCCTTGCACTGATATAA  300

seq1  TCATAAGGACTTCATAATTTTATTCAAGTGTACTGGTTTTAAATCTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGACTTCATAATTTTATTCAAGTGTACTGGTTTTAAATCTAATT  350

seq1  CATATTTAAATACGTAGCACCAGAAGGATAAATTAGACAAAAATTGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAAATACGTAGCACCAGAAGGATAAATTAGACAAAAATTGCAGG  400

seq1  TTTCTTTATTGTTAAAGCTTAAATGATTCTAAATTCTTTAGTTCAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTGTTAAAGCTTAAATGATTCTAAATTCTTTAGTTCAACAGA  450

seq1  GTGCACATCAGATATACAAAGTTATATAAATCCCTATGTTCTCTAGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATCAGATATACAAAGTTATATAAATCCCTATGTTCTCTAGTAAT  500

seq1  TGTTTTTATGAAAAATCTTTCCCATACAACGTGGACTAGATCCTGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATGAAAAATCTTTCCCATACAACGTGGACTAGATCCTGCTTTT  550

seq1  TAAGAACCTCTATGGAATGAATTC  574
      ||||||||||||||||||||||||
seq2  TAAGAACCTCTATGGAATGAATTC  574

seq1: chr2_113242724_113243857
seq2: B6Ng01-058D17.g_68_1179

seq1  GAATTCACTAATAGGAAAAATAAGGGTGGAAGGCCTGTTTAGCTGTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATAGGAAAAATAAGGGTGGAAGGCCTGTTTAGCTGTAGAC  50

seq1  TGCTCTAAGACTTGTGATTTCTGTTGCTACTTAAGACCGTCAGACTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAGACTTGTGATTTCTGTTGCTACTTAAGACCGTCAGACTAAAA  100

seq1  AGTTATCTTGCCAACTATATAATTATTAGAAAATGAGACTATAGACATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTTGCCAACTATATAATTATTAGAAAATGAGACTATAGACATAG  150

seq1  GATTTCCAAATTTGTATTTTTGTGAAAATAAAATTATTTCTCTTTGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAAATTTGTATTTTTGTGAAAATAAAATTATTTCTCTTTGGAAA  200

seq1  GAAAACCTTCCTGTTGGCCTTCCAGGTTATGGACAGGTTAGGACATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTTCCTGTTGGCCTTCCAGGTTATGGACAGGTTAGGACATTGAA  250

seq1  AACACTATCAACATTGATTTGAATATAACTATGCATCTCCCACGTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATCAACATTGATTTGAATATAACTATGCATCTCCCACGTGGTTT  300

seq1  AGGGGTGAAGAGGTACAAAGAGCCTGTCATAAGACATTCATGCTCAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGAAGAGGTACAAAGAGCCTGTCATAAGACATTCATGCTCAGGAT  350

seq1  AATCATGTGAATGAGGCCTTATTTAAAAAACACATTTTTTTTTTCCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTGAATGAGGCCTTATTTAAAAAACACATTTTTTTTTTCCCTCT  400

seq1  AAGATGAGGGACTTACCATCCTGACTGTTGGCAAAATACAAAGATTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGGGACTTACCATCCTGACTGTTGGCAAAATACAAAGATTTGAT  450

seq1  TTTGTTGTGATTGAACTAAGCCCTTGTAGAATATGAAGTACAAATCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTGATTGAACTAAGCCCTTGTAGAATATGAAGTACAAATCACAG  500

seq1  ATGAATGGTTTGTATATACTGTTTTTTTAGATCTTTTCTAGTCGTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGTTTGTATATACTGTTTTTTTAGATCTTTTCTAGTCGTTTCTT  550

seq1  CATTATCTGTGGAAACCTTGAGCTCACATTTGAGTGCAGTGCAGTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTGTGGAAACCTTGAGCTCACATTTGAGTGCAGTGCAGTGTGTG  600

seq1  TGTGTGTATTTGTAGAGGTCAGTGGTCAGTGTTGTTGTGTATCTTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATTTGTAGAGGTCAGTGGTCAGTGTTGTTGTGTATCTTTCTCA  650

seq1  CTTGCTTTCTACCCTATTTTGGGGGACTGAATCTCACTGAGCCTAGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTCTACCCTATTTTGGGGGACTGAATCTCACTGAGCCTAGAGGT  700

seq1  TACCAACTGGGTAGCAAGTTTCAGGAAATCACCTGTTCCCACTTCCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTGGGTAGCAAGTTTCAGGAAATCACCTGTTCCCACTTCCCTAG  750

seq1  AATTACAGGCCGTTGTAACTGGCTTTTAAAAAACATTTTGTTGTTTGATG  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTACAGGCCGTTGTAACTGGCTTTT-AAAAACATTTTGTTGTTTGATG  799

seq1  TGGATACTAGAGATCAAACCCAGTGTCCCTTTTTGAGTAGCAAGCAAC-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGATACTAGAGATCAAACCCAGTGTCCCTTTTTGAGTAGCAAGCAACTT  849

seq1  TTCCACCATTTCACATTCTCGAGGTCATATACATGACAGCAGTGAAGCAC  899
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTACCATTTCACATTCTCGAGGTTATATACATGACAGCAGTGAAGCAC  899

seq1  CTTATAGAAAAAGGCAAACCCTCTGCTGCAAAGAGAGCATGAGGATGGAG  949
       |||||| ||||||||||||||||||||| |||||||||||| |||||||
seq2  TTTATAG-AAAAGGCAAACCCTCTGCTGC-AAGAGAGCATGA-GATGGAG  946

seq1  GGACAATTGTCATCCAAAACTCACGATACTATAAGCACCTCTCTGTGTGG  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAC-ATTGTCATCCAAAACTCACGATACTATAAGCACCTCTCTGTGTGG  995

seq1  AGCAGTGGAAAACAACGATGCTTTAGAATCAGGCATTCTTTAGATTATAT  1049
      |||||| |||||| |||||||||||| |||| |||||| ||||| |||||
seq2  AGCAGT-GAAAAC-ACGATGCTTTAG-ATCA-GCATTC-TTAGA-TATAT  1039

seq1  AATAATTAGAAACATAAAAATAGTTTTAAAAAAGCCCACAAATGTAGACA  1099
      ||||| ||||||| ||||| ||||||  |||||| ||||||   || || 
seq2  AATAA-TAGAAACCTAAAAGTAGTTT--AAAAAG-CCACAA---TAAAC-  1081

seq1  TACAAGGATGTTCATTGCAACTCTTAAGACAGAAA  1134
      ||||  |||||||| |||||||||| |||||||||
seq2  TACA--GATGTTCA-TGCAACTCTT-AGACAGAAA  1112