BAC Information

Click to search

BAC

Clone NameB6Ng01-059I03
Chromosome2 (Build37)
Map Location 62,607,411 - 62,750,597
singlet/doubletdoublet
Overlap geneKcnh7
Upstream genePsmd14, Tbr1, LOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1, Gca
Downstream geneEG667257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059I03.bB6Ng01-059I03.g
ACCDH880769DH880770
length425923
definitionDH880769|Mus musculus domesticus DNA, BAC clone: B6Ng01-059I03, 5' end.DH880770|Mus musculus domesticus DNA, BAC clone: B6Ng01-059I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,607,411 - 62,607,841)(62,749,673 - 62,750,597)
sequence
ttaatatattctggatgctagactttttcatatttatatcttccaaatat
tttcttctagttcttcacttttacttttttcgttttaaacaacatcattt
gattttttttttttttgagatggcatcttacaatattgccctggttgaca
ggaaattttctgtgtagagcaggctggcctccaactcacacctgcctctg
ccctctacgtgctggcattaaaggcatgtgcaatcagacccagctcaaca
ttcttatttgaaaaataaataattttgatgagatacaattgaccaatttt
tattttaaagttttttttttctttaagctatcatgttatcaatagtgcaa
tttgctctatattgtcaattgtaaatcagttattaatgttttctgttgtg
gtggtgttggtgttgatggtgatat
gaattctgtttgtatcccttaaaaaaaaaaaaaagcaaactaggaaagga
ctcagatctgataattcagagtcacagcacaagaagatgttgagtctgca
gtggtagtcttgatttgatgggcttgcactttcttgttctactttactat
tatctgaaagaagcatacttgccccacttggaccctgtgtttgccacaca
aagcaaatggccactgagaaggctctgtgtaagtgtaaatagccgtgttg
tgttaacaaataggacaaaagttggagagataaaatacaattattcattt
atctgagaactgttgtcatttgccatgtatatatctaatgtttttctcta
agtcttcacatcctctcaactgaaaaccaaaccatccatgggaaggtagc
atcaactgggtgttcagatgaagagaacaagtctttagtcagtaaaccat
gctgttcgaactcaagggctctacagggagatgctgatacttgcatattt
aaacaaggtgactaagctatctttcacttggtggcagtcacttaaattat
aagtgggaaaaactgttatgttctgaaagtgaccttatattggtgaatca
gctccatgatactgtgaagacaaaaactattctcgtctttcaacctcagt
gaaagtcacatgatttccaccagatcaagcactcttctgtgctgccatag
ctaccccaactttggagatccaacagaaaatacagaatccagaagaacag
aatatttgccggggcatctaattaagactttgaattagtcagggttctct
aggataacagaacccatagaataaatatatatgtatatagtaaaatgaat
atatctagtatcttgatgtatagatgtatatatacaatatgcacatgttt
atatgtatgtgtatatgtatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_62607411_62607841
seq2: B6Ng01-059I03.b_44_474

seq1  GAATTCTTAATATATTCTGGATGCTAGACTTTTTCATATTTATATCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATATATTCTGGATGCTAGACTTTTTCATATTTATATCTTCC  50

seq1  AAATATTTTCTTCTAGTTCTTCACTTTTACTTTTTTCGTTTTAAACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTCTTCTAGTTCTTCACTTTTACTTTTTTCGTTTTAAACAACA  100

seq1  TCATTTGATTTTTTTTTTTTTTGAGATGGCATCTTACAATATTGCCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGATTTTTTTTTTTTTTGAGATGGCATCTTACAATATTGCCCTGG  150

seq1  TTGACAGGAAATTTTCTGTGTAGAGCAGGCTGGCCTCCAACTCACACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGAAATTTTCTGTGTAGAGCAGGCTGGCCTCCAACTCACACCTG  200

seq1  CCTCTGCCCTCTACGTGCTGGCATTAAAGGCATGTGCAATCAGACCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCTCTACGTGCTGGCATTAAAGGCATGTGCAATCAGACCCAGC  250

seq1  TCAACATTCTTATTTGAAAAATAAATAATTTTGATGAGATACAATTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTCTTATTTGAAAAATAAATAATTTTGATGAGATACAATTGACC  300

seq1  AATTTTTATTTTAAAGTTTTTTTTTTCTTTAAGCTATCATGTTATCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTTTAAAGTTTTTTTTTTCTTTAAGCTATCATGTTATCAATA  350

seq1  GTGCAATTTGCTCTATATTGTCAATTGTAAATCAGTTATTAATGTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTTGCTCTATATTGTCAATTGTAAATCAGTTATTAATGTTTTCT  400

seq1  GTTGTGGTGGTGTTGGTGTTGATGGTGATAT  431
      |||||||||||||||||||||||||||||||
seq2  GTTGTGGTGGTGTTGGTGTTGATGGTGATAT  431

seq1: chr2_62749673_62750597
seq2: B6Ng01-059I03.g_68_990 (reverse)

seq1  CACATACATATACACATACATATATACATGTGCATATATGTATATATACA  50
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  CACATACATATACACATACATATAAACATGTGCATAT-TGTATATATACA  49

seq1  TTCTATACATCAAGATACTAGATATATTCATTTTACTATATACATATATA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTATACATCAAGATACTAGATATATTCATTTTACTATATACATATATA  98

seq1  TTTATTCTATGGGTTCTGTTATCCTAGAGAACCCTGACTAATTCAAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTATGGGTTCTGTTATCCTAGAGAACCCTGACTAATTCAAAGTC  148

seq1  TTAATTAGATGCCCCGGCAAATATTCTGTTCTTCTGGATTCTGTATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGATGCCCCGGCAAATATTCTGTTCTTCTGGATTCTGTATTTTC  198

seq1  TGTTGGATCTCCAAAGTTGGGGTAGCTATGGCAGCACAGAAGAGTGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGATCTCCAAAGTTGGGGTAGCTATGGCAGCACAGAAGAGTGCTTG  248

seq1  ATCTGGTGGAAATCATGTGACTTTCACTGAGGTTGAAAGACGAGAATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTGGAAATCATGTGACTTTCACTGAGGTTGAAAGACGAGAATAGT  298

seq1  TTTTGTCTTCACAGTATCATGGAGCTGATTCACCAATATAAGGTCACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTCACAGTATCATGGAGCTGATTCACCAATATAAGGTCACTTT  348

seq1  CAGAACATAACAGTTTTTCCCACTTATAATTTAAGTGACTGCCACCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATAACAGTTTTTCCCACTTATAATTTAAGTGACTGCCACCAAGT  398

seq1  GAAAGATAGCTTAGTCACCTTGTTTAAATATGCAAGTATCAGCATCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATAGCTTAGTCACCTTGTTTAAATATGCAAGTATCAGCATCTCCC  448

seq1  TGTAGAGCCCTTGAGTTCGAACAGCATGGTTTACTGACTAAAGACTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGCCCTTGAGTTCGAACAGCATGGTTTACTGACTAAAGACTTGTT  498

seq1  CTCTTCATCTGAACACCCAGTTGATGCTACCTTCCCATGGATGGTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATCTGAACACCCAGTTGATGCTACCTTCCCATGGATGGTTTGGT  548

seq1  TTTCAGTTGAGAGGATGTGAAGACTTAGAGAAAAACATTAGATATATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTGAGAGGATGTGAAGACTTAGAGAAAAACATTAGATATATACA  598

seq1  TGGCAAATGACAACAGTTCTCAGATAAATGAATAATTGTATTTTATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATGACAACAGTTCTCAGATAAATGAATAATTGTATTTTATCTCT  648

seq1  CCAACTTTTGTCCTATTTGTTAACACAACACGGCTATTTACACTTACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTTGTCCTATTTGTTAACACAACACGGCTATTTACACTTACACA  698

seq1  GAGCCTTCTCAGTGGCCATTTGCTTTGTGTGGCAAACACAGGGTCCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTCTCAGTGGCCATTTGCTTTGTGTGGCAAACACAGGGTCCAAGT  748

seq1  GGGGCAAGTATGCTTCTTTCAGATAATAGTAAAGTAGAACAAGAAAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGTATGCTTCTTTCAGATAATAGTAAAGTAGAACAAGAAAGTGC  798

seq1  AAGCCCATCAAATCAAGACTACCACTGCAGACTCAACATCTTCTTGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATCAAATCAAGACTACCACTGCAGACTCAACATCTTCTTGTGCT  848

seq1  GTGACTCTGAATTATCAGATCTGAGTCCTTTCCTAGTTTGCTTTTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTGAATTATCAGATCTGAGTCCTTTCCTAGTTTGCTTTTTTTTT  898

seq1  TTTTTAAGGGATACAAACAGAATTC  925
      |||||||||||||||||||||||||
seq2  TTTTTAAGGGATACAAACAGAATTC  923