BAC Information

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BAC

Clone NameB6Ng01-059J10
Chromosome2 (Build37)
Map Location 52,278,459 - 52,392,834
singlet/doubletdoublet
Overlap geneArl5a, Cacnb4
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670
Downstream geneOTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059J10.bB6Ng01-059J10.g
ACCDH880819DH880820
length1,0871,099
definitionDH880819|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J10, 5' end.DH880820|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,391,734 - 52,392,834)(52,278,459 - 52,279,574)
sequence
gaattcagcgagaaggctcgggcagtcagggaaagcttacccaggcttta
gccagtttccaaaagaaagagctagaaagaaggaaaggcaggatgtgcca
tagtgccctctgcgagccgctgccagccaccacgagctggttttggtgga
ccacacaacactctcccactgaacatactttgggagaagttagtggcaat
aggcgattgggggaaattgagagatttatttgtttgttttattttattaa
cagccttggagcttgaacctagagcttcatgcattgtggcaggtgtgcta
cagctccagccttgtgaggccgggcagtgggatgagtttctgtgcattga
gaggacagaaggaggggctcaggcaaagaggcctgttagaaagccgtgga
aagaacctgggtaaaagagaatggagctgagctaggcccgagtgaggtgg
aaacagaggaagaagtgatacgggacccgtgtgggatgtcagttcatctg
gctggtggcccattggcttagaaagggagaggtactctgtgtttggctta
agtgactgatggatagtcttgctgatgaggctgggatgttggccatctct
tttgatgtcttctggacggatccagtgagtgctggtcaggagccaggcca
actcttgaggctgcagctctccagctgttgatcttgactcctggctaaga
aaggtactgattccaccaaggccctgtgcaaccaggtacttgcttaggat
aatgctgttcaggtatatagtttctgggccctacccctatcttcatatac
cctattgtgcaatatttagaaactattgagggtacttgtcacatgttctt
atgttgtatattttcctgttggataacatttacccagagtctctcccacc
tcttaattttcatagatgaatttctactcattatctgtgatgtccgctga
tacatgtaaaagaaaaatgagtgcccagcatgaaacttggtgatcactat
atactctttgtcctttcttaaacagtagacagcagcattatagtagtata
atctcaagatcccatttgccaagaaaatgtctgaaga
gaattccgtgaggctactgagctgggaagagaccatttaacgattttttt
tcttcacgatctcactctattgactggtaatttcctaggaactggactct
attaatcctcttgttaattttcaaactctgagtaaacgttcaggcaaatg
ctactacaaaatgcagagcacaagatctgtgctgctaccaatgcattcct
gctatcatgtgcaactaggtgagtttcttttaaagttctaattcattttt
taagttacagcaacggtttggtcactgactcaaagaagaaagtgagacca
gtaccagagacactttaaagcaaaaggtctttctaaaccaaagcagaact
gaaacactagtctcactaaattcaagactgtagaggacagaactagaata
agaacacttattacccacacaaatatcaccagttctacaacaatgtaacc
tttagtacttcaaacctagagattaaatattcaaaaactgtagaccccac
aaatccctcctgtgctaggtgagagtatctaaacccacagaattatgaag
ccactagaaaccactaccccgtcacacgttctctgctgaccagacagagc
taatggaaatatcctctttattgccttccacttcatttagtaccgttatc
tttaggtatcatttttaaaaaaattattattaaaaaaagcagaacccact
agggattacaagtcccataaaaccagctctatcccagaggaggagcaagc
ccggcaactgctccttctaaatagtaggcgccaccgttcattaaagtttt
aactggaaaaagtggggggtgcgacatcgctaccagctttatacaagaga
aaactgtacgtgcttgacagatggaatgaactgcaagtagagctttttta
aaaaaacacctatatttcatttcagtaactatgtagttctgttaagacaa
tattctctcagtatcacacacccattttgtaatttttttttatgaattcc
ctatgcctttcgtgcaatgtctgcatttaggcgaactaaccagtacctgc
tagttactatgtcaatgagctgcctcccgagcagcttttaagctttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52391734_52392834
seq2: B6Ng01-059J10.b_46_1132 (reverse)

seq1  TCTTCAAGACATATTTCTTGACAAATGGTGATCTTGAGATTATACTACTA  50
      ||||| |||||| ||||||| ||||||| |||||||||||||||||||||
seq2  TCTTC-AGACAT-TTTCTTGGCAAATGG-GATCTTGAGATTATACTACTA  47

seq1  TTATGGTTTGCTGTCTACTGTTTTAAGAAAGAGACAAAGAGTAATATAGT  100
      | |||   |||||||||||| |||||||||| |||||||||| |||||||
seq2  TAATG--CTGCTGTCTACTG-TTTAAGAAAG-GACAAAGAGT-ATATAGT  92

seq1  GATCACCAAGGTTTCATGGCTGGGCACTCATTTTTTCTTTTTACATGTAT  150
      ||||||||| ||||||| |||||||||||||||||   ||||||||||||
seq2  GATCACCAA-GTTTCAT-GCTGGGCACTCATTTTT--CTTTTACATGTAT  138

seq1  CAGCGGACATTCACAGATAATGAGTAGAAATTCATCTATGAAAATTAAGA  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGACA-TCACAGATAATGAGTAGAAATTCATCTATGAAAATTAAGA  187

seq1  GGTGGGAGAGACTCTGGGTAAATGTTATCCAACAGGAAAATATACAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGAGACTCTGGGTAAATGTTATCCAACAGGAAAATATACAACAT  237

seq1  AAGAACATGTGACAAGTACCCTCAATAGTTTCTAAATATTGCACAATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATGTGACAAGTACCCTCAATAGTTTCTAAATATTGCACAATAGG  287

seq1  GTATATGAAGATAGGGGTAGGGCCCAGAAACTATATACCTGAACAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGAAGATAGGGGTAGGGCCCAGAAACTATATACCTGAACAGCATT  337

seq1  ATCCTTAAGCAAGTACCTGGTTGCACAGGGCCTTGGTGGAATCAGTACCT  400
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCC-TAAGCAAGTACCTGGTTGCACAGGGCCTTGGTGGAATCAGTACCT  386

seq1  TTCTTAGCCAGGAGTCAAGATCAACAGCTGGAGAGCTGCAGCCTCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCCAGGAGTCAAGATCAACAGCTGGAGAGCTGCAGCCTCAAGAG  436

seq1  TTGGCCTGGCTCCTGACCAGCACTCACTGGATCCGTCCAGAAGACATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGGCTCCTGACCAGCACTCACTGGATCCGTCCAGAAGACATCAA  486

seq1  AAGAGATGGCCAACATCCCAGCCTCATCAGCAAGACTATCCATCAGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGGCCAACATCCCAGCCTCATCAGCAAGACTATCCATCAGTCAC  536

seq1  TTAAGCCAAACACAGAGTACCTCTCCCTTTCTAAGCCAATGGGCCACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCAAACACAGAGTACCTCTCCCTTTCTAAGCCAATGGGCCACCAG  586

seq1  CCAGATGAACTGACATCCCACACGGGTCCCGTATCACTTCTTCCTCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGAACTGACATCCCACACGGGTCCCGTATCACTTCTTCCTCTGTT  636

seq1  TCCACCTCACTCGGGCCTAGCTCAGCTCCATTCTCTTTTACCCAGGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACTCGGGCCTAGCTCAGCTCCATTCTCTTTTACCCAGGTTCT  686

seq1  TTCCACGGCTTTCTAACAGGCCTCTTTGCCTGAGCCCCTCCTTCTGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGGCTTTCTAACAGGCCTCTTTGCCTGAGCCCCTCCTTCTGTCCT  736

seq1  CTCAATGCACAGAAACTCATCCCACTGCCCGGCCTCACAAGGCTGGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGCACAGAAACTCATCCCACTGCCCGGCCTCACAAGGCTGGAGCT  786

seq1  GTAGCACACCTGCCACAATGCATGAAGCTCTAGGTTCAAGCTCCAAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACACCTGCCACAATGCATGAAGCTCTAGGTTCAAGCTCCAAGGCT  836

seq1  GTTAATAAAATAAAACAAACAAATAAATCTCTCAATTTCCCCCAATCGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAAAATAAAACAAACAAATAAATCTCTCAATTTCCCCCAATCGCC  886

seq1  TATTGCCACTAACTTCTCCCAAAGTATGTTCAGTGGGAGAGTGTTGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCACTAACTTCTCCCAAAGTATGTTCAGTGGGAGAGTGTTGTGTG  936

seq1  GTCCACCAAAACCAGCTCGTGGTGGCTGGCAGCGGCTCGCAGAGGGCACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCAAAACCAGCTCGTGGTGGCTGGCAGCGGCTCGCAGAGGGCACT  986

seq1  ATGGCACATCCTGCCTTTCCTTCTTTCTAGCTCTTTCTTTTGGAAACTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACATCCTGCCTTTCCTTCTTTCTAGCTCTTTCTTTTGGAAACTGG  1036

seq1  CTAAAGCCTGGGTAAGCTTTCCCTGACTGCCCGAGCCTTCTCGCTGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCCTGGGTAAGCTTTCCCTGACTGCCCGAGCCTTCTCGCTGAATT  1086

seq1  C  1101
      |
seq2  C  1087

seq1: chr2_52278459_52279574
seq2: B6Ng01-059J10.g_68_1166

seq1  GAATTCCGTGAGGCTACTGAGCTGGGAAGAGACCATTTAACGATTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGAGGCTACTGAGCTGGGAAGAGACCATTTAACGATTTTTTT  50

seq1  TCTTCACGATCTCACTCTATTGACTGGTAATTTCCTAGGAACTGGACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACGATCTCACTCTATTGACTGGTAATTTCCTAGGAACTGGACTCT  100

seq1  ATTAATCCTCTTGTTAATTTTCAAACTCTGAGTAAACGTTCAGGCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCCTCTTGTTAATTTTCAAACTCTGAGTAAACGTTCAGGCAAATG  150

seq1  CTACTACAAAATGCAGAGCACAAGATCTGTGCTGCTACCAATGCATTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACAAAATGCAGAGCACAAGATCTGTGCTGCTACCAATGCATTCCT  200

seq1  GCTATCATGTGCAACTAGGTGAGTTTCTTTTAAAGTTCTAATTCATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCATGTGCAACTAGGTGAGTTTCTTTTAAAGTTCTAATTCATTTTT  250

seq1  TAAGTTACAGCAACGGTTTGGTCACTGACTCAAAGAAGAAAGTGAGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTACAGCAACGGTTTGGTCACTGACTCAAAGAAGAAAGTGAGACCA  300

seq1  GTACCAGAGACACTTTAAAGCAAAAGGTCTTTCTAAACCAAAGCAGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGAGACACTTTAAAGCAAAAGGTCTTTCTAAACCAAAGCAGAACT  350

seq1  GAAACACTAGTCTCACTAAATTCAAGACTGTAGAGGACAGAACTAGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTAGTCTCACTAAATTCAAGACTGTAGAGGACAGAACTAGAATA  400

seq1  AGAACACTTATTACCCACACAAATATCACCAGTTCTACAACAATGTAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTTATTACCCACACAAATATCACCAGTTCTACAACAATGTAACC  450

seq1  TTTAGTACTTCAAACCTAGAGATTAAATATTCAAAAACTGTAGACCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTACTTCAAACCTAGAGATTAAATATTCAAAAACTGTAGACCCCAC  500

seq1  AAATCCCTCCTGTGCTAGGTGAGAGTATCTAAACCCACAGAATTATGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTCCTGTGCTAGGTGAGAGTATCTAAACCCACAGAATTATGAAG  550

seq1  CCACTAGAAACCACTACCCCGTCACACGTTCTCTGCTGACCAGACAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGAAACCACTACCCCGTCACACGTTCTCTGCTGACCAGACAGAGC  600

seq1  TAATGGAAATATCCTCTTTATTGCCTTCCACTTCATTTAGTACCGTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAAATATCCTCTTTATTGCCTTCCACTTCATTTAGTACCGTTATC  650

seq1  -TTAGGTATCATTTTTAAAAAAATTATTATTAAAAAAAGCAGAACCCACT  699
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTATCATTTTTAAAAAAATTATTATTAAAAAAAGCAGAACCCACT  700

seq1  AGGGATTACAAGTCCCATAAAACCAGCTCTATCCCAGAGGAGGAGCAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTACAAGTCCCATAAAACCAGCTCTATCCCAGAGGAGGAGCAAGC  750

seq1  CCGGCAACTGCTCCTTCTAAATAGTAGGCGCCACCGTTCATT-AAGTTTT  798
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCGGCAACTGCTCCTTCTAAATAGTAGGCGCCACCGTTCATTAAAGTTTT  800

seq1  AACTGGAAAAAGT-GGGGGTGCGACAACGCTACCAGC-TTATACAAGAGA  846
      ||||||||||||| |||||||||||| |||||||||| ||||||||||| 
seq2  AACTGGAAAAAGTGGGGGGTGCGACATCGCTACCAGCTTTATACAAGAG-  849

seq1  AAAACTGTACGTGCTTGACAGATGGAATGAACTGCAAGTAGAGCTTTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTACGTGCTTGACAGATGGAATGAACTGCAAGTAGAGCTTTTTT  899

seq1  TAAAAAAAAGCACTATATTTCATTTCAGTAACTATGTAGTTCTGTTAGGA  946
        |||||||   ||||||||||||||||||||||||||||||||||| ||
seq2  --AAAAAAACACCTATATTTCATTTCAGTAACTATGTAGTTCTGTTAAGA  947

seq1  CCATATTCTCTCCAGTATCACACACCCATTTTGTAATTTTTTTTTTTAAT  996
      | ||||||||| |||||||||||||||||||||||||||||||||   ||
seq2  CAATATTCTCT-CAGTATCACACACCCATTTTGTAATTTTTTTTT---AT  993

seq1  AAATCCCCTATGCCTTTCCGTGGCAAATGTCTGCATTTAGGCGAACTTAA  1046
       ||| |||||||||||| ||||   ||||||||||||||||||||| |||
seq2  GAATTCCCTATGCCTTT-CGTG--CAATGTCTGCATTTAGGCGAAC-TAA  1039

seq1  CACAGTAACCTGCTAGTTACCTAATGCTAATGAAGCCTGCCTCCCGAGGC  1096
      | |||| |||||||||||||   |||  |||||   ||||||||||| ||
seq2  C-CAGT-ACCTGCTAGTTAC--TATGTCAATGA--GCTGCCTCCCGA-GC  1082

seq1  AGGCTTTTAAAAGCTTTCAG  1116
      | ||||||  ||||||||||
seq2  A-GCTTTT--AAGCTTTCAG  1099