BAC Information

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BAC

Clone NameB6Ng01-060I21
Chromosome2 (Build37)
Map Location 124,527,440 - 124,643,191
singlet/doubletdoublet
Overlap geneLOC100043367, LOC100043369
Upstream gene4930517E11Rik, LOC100043360, Sema6d
Downstream geneSlc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060I21.bB6Ng01-060I21.g
ACCDH881497DH881498
length1,115944
definitionDH881497|Mus musculus domesticus DNA, BAC clone: B6Ng01-060I21, 5' end.DH881498|Mus musculus domesticus DNA, BAC clone: B6Ng01-060I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,642,057 - 124,643,191)(124,527,440 - 124,528,391)
sequence
gaattcaatattttcatacattgcaagtaaaagttgtgtgcatctgaaac
taattatttaggctctcgagattgctctttaattacttgaccagggaatg
tttatgtgacttaaacattagcttcaatattcttgatcaaacgttttagg
ctgttggaagagcacatcacattgattttatggtcaaacaaatggttgag
aagttcctttgaaagtggtccagaaaaggaaaatagacttcatactggtt
gattcaagggaaggatcatgtacagggaatgctaaggtccattatcaact
agcatcttggtgggatacagagccccagagggtcctctaggggtactttc
tagaaggagaaattatgagttatcaatttcctttagtacttgagatccat
ccttggggggtaccattgttagtacaggagacccagtagcaaacaggcta
ttacagtaacccacacggcggtgactagccatctattcattttaatttct
tgggtaattggtttcatctattagcagtcagcctcatatctaagccacaa
atgacttttctccattaaaaaaaaaagtctttcctcttgggtgtgatggt
caactaagccaataagcctggtggattttgctagcttcttatatcagtga
cttcagacactgcagggattgctaaatacggtctacccatggactcacct
ttttttttttttttttttgataaaactgtcccagaatgctgtgcatttca
ccattagttttccttcattatacagcacagatttataaaatttacttagc
ggaattcgtgatctcctcacaacactgcaggaagcagtttaatatgtcat
tttcgaagggctgcaggagccgaatcgcttttacagtctacagtaaaagc
agctcttctcgagaggcagtgcagtgatttttatgcgtctttttgagtct
caaacatggatttacctgtactacaaatttttacactttttacaccacag
ttgttgactttacgaggaaatgtaagagacttcgtgccacatcactggaa
ccctccaaccgctgcttggctcagctatcaccagttctataacataccct
gggacagccagtgag
gaattctcacttggaatgctggggcagactgctgtttctgttgctgactg
agaaaggaagcccagaactcccaaagctactggtgtccttccaacaacca
ctagatgcaactacaggaaaaaaggagatattaaaacacactagtaaaac
caattagaggctcatccaactcctggactgctggcctttctgttgtttag
gccaatgaaacaccttcattacttaagcctgtatgtacttgtggtatgtg
tgtgtgtgtgtgcgcgcgcgcgcgcgcgagagagagtgccctcaagtaaa
cattcacgtgtgtttgtgtacatgtagaagtcaaagagcatccttggatg
acattcttgagggattacttgccgttttttctaagataggctctctccta
gggatcctgtactcaccatttagactaggctggctcccagcatccctcta
gcatccccctggctctgcctccaaagcaccatgcttgacttgggagatct
ggaacatccttgatcttagaactctcagagtgaatacctgttgtcttggt
ataattattagaagtgtctcatttcatactcagtatccttctttggagaa
taaattatatagttaccttaatttttctgtaacttagaacgcatcctgac
taactcaagaaattcttcttcagtctaatttgatttcttcttaggctttt
agcaaatatcccacaacgtgaaatgaggggaacagaaaagaaaagacctc
ctaataaatgcgatgaggtactttgacacctcaaatttgtaaatgcatct
tgcttttgccagctaagtaagttcttttggggtctggatcaaataaaaat
gccatttagggtgtcagattcttagtaagcatctgcttacgcaggccatt
tgaaacccagctgattactgcgcgaacatcaatgcctagcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_124642057_124643191
seq2: B6Ng01-060I21.b_48_1162 (reverse)

seq1  CTCACTGGCTTGTTTTCCCAGGTGTATGTTAATAGACATGGTGATAGCTG  50
      |||||||||    | ||||||| ||||||| |||||  ||||||||||||
seq2  CTCACTGGC----TGTCCCAGG-GTATGTT-ATAGAACTGGTGATAGCTG  44

seq1  AAGCCAAAGCAGGCGGTTTGGGAGGTGTCACAGTGAATGTGGCACGGAAG  100
       |||| ||||| ||||||  ||||| ||  ||||| ||||||||| ||||
seq2  -AGCC-AAGCA-GCGGTT--GGAGG-GTTCCAGTG-ATGTGGCAC-GAAG  86

seq1  TCTCTTTACATTTCCTCTGTAAAGTCAACAACTTGTTGGTTGTAAAAAGT  150
      |||| |||||||||||| |||||||||||||| |||  | ||||||||||
seq2  TCTC-TTACATTTCCTC-GTAAAGTCAACAAC-TGT--GGTGTAAAAAGT  131

seq1  GTAAATATTTTGTAGTACAGGTAAATCCATGTTTGAGACTCAAAAAGACG  200
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAA-AATTTGTAGTACAGGTAAATCCATGTTTGAGACTCAAAAAGACG  180

seq1  CATAAAAATCACTGCACTGCCTCTCGAGAAGGGCTGCTTTTACTGTAGAC  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATAAAAATCACTGCACTGCCTCTCGAGAAGAGCTGCTTTTACTGTAGAC  230

seq1  TGTAAAAGCGATTCGGCTCCTGCAGCCCTTCGAAAATGACATATTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGCGATTCGGCTCCTGCAGCCCTTCGAAAATGACATATTAAACT  280

seq1  GCTTCCTGCAGTGTTGTGAGGAGATCACGAATTCCGCTAAGTAAATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGCAGTGTTGTGAGGAGATCACGAATTCCGCTAAGTAAATTTTA  330

seq1  TAAATCTGTGCTGTATAATGAAGGAAAACTAATGGTGAAATGCACAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGTGCTGTATAATGAAGGAAAACTAATGGTGAAATGCACAGCAT  380

seq1  TCTGGGACAGTTTTATCAAAAAAAAAAAAAAAAAAAGGTGAGTCCATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACAGTTTTATCAAAAAAAAAAAAAAAAAAAGGTGAGTCCATGGG  430

seq1  TAGACCGTATTTAGCAATCCCTGCAGTGTCTGAAGTCACTGATATAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCGTATTTAGCAATCCCTGCAGTGTCTGAAGTCACTGATATAAGAA  480

seq1  GCTAGCAAAATCCACCAGGCTTATTGGCTTAGTTGACCATCACACCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAAAATCCACCAGGCTTATTGGCTTAGTTGACCATCACACCCAAG  530

seq1  AGGAAAGACTTTTTTTTTTAATGGAGAAAAGTCATTTGTGGCTTAGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGACTTTTTTTTTTAATGGAGAAAAGTCATTTGTGGCTTAGATAT  580

seq1  GAGGCTGACTGCTAATAGATGAAACCAATTACCCAAGAAATTAAAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGACTGCTAATAGATGAAACCAATTACCCAAGAAATTAAAATGAA  630

seq1  TAGATGGCTAGTCACCGCCGTGTGGGTTACTGTAATAGCCTGTTTGCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGCTAGTCACCGCCGTGTGGGTTACTGTAATAGCCTGTTTGCTAC  680

seq1  TGGGTCTCCTGTACTAACAATGGTACCCCCCAAGGATGGATCTCAAGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCCTGTACTAACAATGGTACCCCCCAAGGATGGATCTCAAGTAC  730

seq1  TAAAGGAAATTGATAACTCATAATTTCTCCTTCTAGAAAGTACCCCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAATTGATAACTCATAATTTCTCCTTCTAGAAAGTACCCCTAGA  780

seq1  GGACCCTCTGGGGCTCTGTATCCCACCAAGATGCTAGTTGATAATGGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTCTGGGGCTCTGTATCCCACCAAGATGCTAGTTGATAATGGACC  830

seq1  TTAGCATTCCCTGTACATGATCCTTCCCTTGAATCAACCAGTATGAAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTCCCTGTACATGATCCTTCCCTTGAATCAACCAGTATGAAGTC  880

seq1  TATTTTCCTTTTCTGGACCACTTTCAAAGGAACTTCTCAACCATTTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTTTTCTGGACCACTTTCAAAGGAACTTCTCAACCATTTGTTT  930

seq1  GACCATAAAATCAATGTGATGTGCTCTTCCAACAGCCTAAAACGTTTGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAAAATCAATGTGATGTGCTCTTCCAACAGCCTAAAACGTTTGAT  980

seq1  CAAGAATATTGAAGCTAATGTTTAAGTCACATAAACATTCCCTGGTCAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATATTGAAGCTAATGTTTAAGTCACATAAACATTCCCTGGTCAAG  1030

seq1  TAATTAAAGAGCAATCTCGAGAGCCTAAATAATTAGTTTCAGATGCACAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAGAGCAATCTCGAGAGCCTAAATAATTAGTTTCAGATGCACAC  1080

seq1  AACTTTTACTTGCAATGTATGAAAATATTGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  AACTTTTACTTGCAATGTATGAAAATATTGAATTC  1115

seq1: chr2_124527440_124528391
seq2: B6Ng01-060I21.g_68_1011

seq1  GAATTCTCACTTGGAATGCTGGGGCAGACTGCTGTTTCTGTTGCTGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTTGGAATGCTGGGGCAGACTGCTGTTTCTGTTGCTGACTG  50

seq1  AGAAAGGAAGCCCAGAACTCCCAAAGCTACTGGTGTCCTTCCAACAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAGCCCAGAACTCCCAAAGCTACTGGTGTCCTTCCAACAACCA  100

seq1  CTAGATGCAACTACAGGAAAAAAGGAGATATTAAAACACACTAGTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGCAACTACAGGAAAAAAGGAGATATTAAAACACACTAGTAAAAC  150

seq1  CAATTAGAGGCTCATCCAACTCCTGGACTGCTGGCCTTTCTGTTGTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGAGGCTCATCCAACTCCTGGACTGCTGGCCTTTCTGTTGTTTAG  200

seq1  GCCAATGAAACACCTTCATTACTTAAGCCTGTATGTACTTGTGGTATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGAAACACCTTCATTACTTAAGCCTGTATGTACTTGTGGTATGTG  250

seq1  TGTGTGTGTGTGCGCGCGCGCGCGCGCGAGAGAGAGTGCCCTCAAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGCGCGCGCGCGCGCGCGAGAGAGAGTGCCCTCAAGTAAA  300

seq1  CATTCACGTGTGTTTGTGTACATGTAGAAGTCAAAGAGCATCCTTGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACGTGTGTTTGTGTACATGTAGAAGTCAAAGAGCATCCTTGGATG  350

seq1  ACATTCTTGAGGGATTACTTGCCGTTTTTTCTAAGATAGGCTCTCTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTGAGGGATTACTTGCCGTTTTTTCTAAGATAGGCTCTCTCCTA  400

seq1  GGGATCCTGTACTCACCATTTAGACTAGGCTGGCTCCCAGCATCCCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCTGTACTCACCATTTAGACTAGGCTGGCTCCCAGCATCCCTCTA  450

seq1  GCATCCCCCTGGCTCTGCCTCCAAAGCACCATGCTTGACTTGGGAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCCCTGGCTCTGCCTCCAAAGCACCATGCTTGACTTGGGAGATCT  500

seq1  GGAACATCCTTGATCTTAGAACTCTCAGAGTGAATACCTGTTGTCTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATCCTTGATCTTAGAACTCTCAGAGTGAATACCTGTTGTCTTGGT  550

seq1  ATAATTATTAGAAGTGTCTCATTTCATACTCAGTATCCTTCTTTGGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTAGAAGTGTCTCATTTCATACTCAGTATCCTTCTTTGGAGAA  600

seq1  TAAATTATATAGTTACCTTAATTTTTCTGTAACTTAGAACGCATCCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATATAGTTACCTTAATTTTTCTGTAACTTAGAACGCATCCTGAC  650

seq1  TAACTCAAGAAATTCTTCTTCAGTCTAACTTGATTTCTTCTTAGGCTTTT  700
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAACTCAAGAAATTCTTCTTCAGTCTAATTTGATTTCTTCTTAGGCTTTT  700

seq1  AGCAAATATCCCACAACGTGAAATGAGGGAAACAGAAAAGAAAAGACCTC  750
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCAAATATCCCACAACGTGAAATGAGGGGAACAGAAAAGAAAAGACCTC  750

seq1  CTAATAAATGCGATGAGGTAACTTTGACACCTCAAATTTGTAAATGCATC  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTAATAAATGCGATGAGGT-ACTTTGACACCTCAAATTTGTAAATGCATC  799

seq1  TTGCTTTTGCCCAGCTAAGTAAAGTTCTTTTGGGGTCTGGATCAAATAAA  850
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  TTGCTTTTG-CCAGCTAAGT-AAGTTCTTTTGGGGTCTGGATCAAATAAA  847

seq1  AATGCCATTTAGGGGTGTCAGATTCTCTAGTAAGCATCTGCCTACTGCAA  900
      ||||||||||| |||||||||||||| |||||||||||||| ||| ||| 
seq2  AATGCCATTTA-GGGTGTCAGATTCT-TAGTAAGCATCTGCTTAC-GCAG  894

seq1  GCCATATTGAAACACAGCTGATTACGGCGCGAAACATCAATGCCATGCCT  950
      ||||| ||||||| ||||||||||| ||||| ||||||||||||  ||||
seq2  GCCAT-TTGAAACCCAGCTGATTACTGCGCG-AACATCAATGCCTAGCCT  942

seq1  CT  952
      ||
seq2  CT  944