BAC Information

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BAC

Clone NameB6Ng01-060K08
Chromosome2 (Build37)
Map Location 180,413,266 - 180,559,100
singlet/doubletdoublet
Overlap geneDido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5
Downstream geneYthdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060K08.bB6Ng01-060K08.g
ACCDH881563DH881564
length6391,132
definitionDH881563|Mus musculus domesticus DNA, BAC clone: B6Ng01-060K08, 5' end.DH881564|Mus musculus domesticus DNA, BAC clone: B6Ng01-060K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,558,463 - 180,559,100)(180,413,266 - 180,414,396)
sequence
gaattccatgtctgtgggaggcagaggagaacgcagagctggaaggtgat
atgcggcttctgcctggagactccgccccaccccagacttcctgtgtctt
ctgtgaagaggtgatgaatccactgagtggcactgaaggtatcacatggg
gagtcacacggggtatcaggactgtatatggcttaacaagagaacctggt
caccagcactggctgaggtcaaaggcaaatctttattcagggtacaaact
gctggcttgtctccaagagaagggaaatcagccccaccaaaagagctcag
gctttttatagggtgtttttagtttagtttagttcagtgggtgtgtagca
agagaacattaaggaaaaaggaactgttacaggcagaaggaactgcagta
agcaacgcttttggggctgggggtggggggagaggctggcctttagaaca
gcaggaggctgtggtcaatctgttctgctgagacaaggggtcagcagact
ctgaaacgcatagaacattctagaacattctgtcttcacttcccaaaagg
ggctgtgtcctaggtgattccatcttgggtcaaagatgtgggccagccac
ccagatcgttcccttagccttgtgatgtctgtttccctg
gaattcacttcacttttaactatataaaaattacatagctgtaactcatg
agagacccatcttactaatagcactttacactgtgggttgctgtctctac
tactagctttctctgccctctcgtggggtaagaaggtattgaccaacact
aaggaggaaggcatctctagtcctgtggactactagtggaagcaaaggtt
gtcatgaccagttctttgtaatggaaactaagctgctgaaagtttgacgg
agtagggaagtagagtgctccgcatgggaacccaactctattctcacacc
atgggtccattagtaaggttgctatagctctgttggtcaccaggtggcag
taatgatccacaaaggcaggaaagagaaaggcattaggggaacaaaccct
gctcatgtacccccaaggtagaaccccacaactgcatgaagttgaaacag
gatccaggtgcagggtaggggtccacacctatagtcccacccatcccagt
cacgctgcctgatggctagtcttaggagggcaggctggccccatgcaggt
atctcacctccagaagcctaaggggagttgctttttttgaagacagtgat
caagcagcaccttgaaacaaggccaggtgctgaattctgttcctcagctc
tggctcatgtaacttaggacttcccattgcttcaccatacctctttccag
tgaggtggcagtggaaatgtttttgctgttgcttcctagacatgcttaag
tatcttcaaataaataatttccctctacccacacctcatgcacatgcctg
taatctcaggattcaggaggctgaggcaggactgaaaaaggtggcgggac
tgatattgaaaccatcaaaaaaaataatacttatctttaagagaagttac
caatttagttttatatgtaagaaaacgaggcttgggacaaagcagcacag
gctacatcagagatgagtgctcagtgactatgcatgtgactaaacatgtg
accctgcgaagttccacatcaacctagaatgaaaatcttttcttactcat
gtcagtatttgaacttccaatcttaatgcagagaaccactctgcaggtat
ctctaacaaatcaaataggatcttggaaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_180558463_180559100
seq2: B6Ng01-060K08.b_48_686 (reverse)

seq1  CAGGGAAACAGTCCTCACAAGGCTGAGGG-ACGATCTGGGAGGCTGGCCC  49
      ||||||||||| | |||||||||| |||| |||||||||| |||||||||
seq2  CAGGGAAACAGACATCACAAGGCTAAGGGAACGATCTGGGTGGCTGGCCC  50

seq1  ACATCTTTGACCCAAGATGGAATCACCTAGGACACAGCCCCTTTTGGGAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTGACCCAAGATGGAATCACCTAGGACACAGCCCCTTTTGGGAA  100

seq1  GTGAAGACAGAATGTTCTAGAATGTTCTATGCGTTTCAGAGTCTGCTGAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGACAGAATGTTCTAGAATGTTCTATGCGTTTCAGAGTCTGCTGAC  150

seq1  CCCTTGTCTCAGCAGAACAGATTGACCACAGCCTCCTGCTGTTCTAAAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCTCAGCAGAACAGATTGACCACAGCCTCCTGCTGTTCTAAAGG  200

seq1  CCAGCCTCTCCCCCCACCCCCAGCCCCAAAAGCGTTGCTTACTGCAGTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTCCCCCCACCCCCAGCCCCAAAAGCGTTGCTTACTGCAGTTC  250

seq1  CTTCTGCCTGTAACAGTTCCTTTTTCCTTAATGTTCTCTTGCTACACACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTGTAACAGTTCCTTTTTCCTTAATGTTCTCTTGCTACACACC  300

seq1  CACTGAACTAAACTAAACTAAAAACACCCTATAAAAAGCCTGAGCTCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACTAAACTAAACTAAAAACACCCTATAAAAAGCCTGAGCTCTTT  350

seq1  TGGTGGGGCTGATTTCCCTTCTCTTGGAGACAAGCCAGCAGTTTGTACCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGCTGATTTCCCTTCTCTTGGAGACAAGCCAGCAGTTTGTACCC  400

seq1  TGAATAAAGATTTGCCTTTGACCTCAGCCAGTGCTGGTGACCAGGTTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAGATTTGCCTTTGACCTCAGCCAGTGCTGGTGACCAGGTTCTC  450

seq1  TTGTTAAGCCATATACAGTCCTGATACCCCGTGTGACTCCCCATGTGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGCCATATACAGTCCTGATACCCCGTGTGACTCCCCATGTGATA  500

seq1  CCTTCAGTGCCACTCAGTGGATTCATCACCTCTTCACAGAAGACACAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTGCCACTCAGTGGATTCATCACCTCTTCACAGAAGACACAGGA  550

seq1  AGTCTGGGGTGGGGCGGAGTCTCCAGGCAGAAGCCGCATATCACCTTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGGTGGGGCGGAGTCTCCAGGCAGAAGCCGCATATCACCTTCCA  600

seq1  GCTCTGCGTTCTCCTCTGCCTCCCACAGACATGGAATTC  638
      |||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCGTTCTCCTCTGCCTCCCACAGACATGGAATTC  639

seq1: chr2_180413266_180414396
seq2: B6Ng01-060K08.g_68_1199

seq1  GAATTCACTTCACTTTTAACTATATAAAAATTACATAGCTGTAACTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCACTTTTAACTATATAAAAATTACATAGCTGTAACTCATG  50

seq1  AGAGACCCATCTTACTAATAGCACTTTACACTGTGGGTTGCTGTCTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCATCTTACTAATAGCACTTTACACTGTGGGTTGCTGTCTCTAC  100

seq1  TACTAGCTTTCTCTGCCCTCTCGTGGGGTAAGAAGGTATTGACCAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCTTTCTCTGCCCTCTCGTGGGGTAAGAAGGTATTGACCAACACT  150

seq1  AAGGAGGAAGGCATCTCTAGTCCTGTGGACTACTAGTGGAAGCAAAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAAGGCATCTCTAGTCCTGTGGACTACTAGTGGAAGCAAAGGTT  200

seq1  GTCATGACCAGTTCTTTGTAATGGAAACTAAGCTGCTGAAAGTTTGACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGACCAGTTCTTTGTAATGGAAACTAAGCTGCTGAAAGTTTGACGG  250

seq1  AGTAGGGAAGTAGAGTGCTCCGCATGGGAACCCAACTCTATTCTCACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGAAGTAGAGTGCTCCGCATGGGAACCCAACTCTATTCTCACACC  300

seq1  ATGGGTCCATTAGTAAGGTTGCTATAGCTCTGTTGGTCACCAGGTGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCATTAGTAAGGTTGCTATAGCTCTGTTGGTCACCAGGTGGCAG  350

seq1  TAATGATCCACAAAGGCAGGAAAGAGAAAGGCATTAGGGGAACAAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATCCACAAAGGCAGGAAAGAGAAAGGCATTAGGGGAACAAACCCT  400

seq1  GCTCATGTACCCCCAAGGTAGAACCCCACAACTGCATGAAGTTGAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTACCCCCAAGGTAGAACCCCACAACTGCATGAAGTTGAAACAG  450

seq1  GATCCAGGTGCAGGGTAGGGGTCCACACCTATAGTCCCACCCATCCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGGTGCAGGGTAGGGGTCCACACCTATAGTCCCACCCATCCCAGT  500

seq1  CACGCTGCCTGATGGCTAGTCTTAGGAGGGCAGGCTGGCCCCATGCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTGCCTGATGGCTAGTCTTAGGAGGGCAGGCTGGCCCCATGCAGGT  550

seq1  ATCTCACCTCCAGAAGCCTAAGGGGAGTTGCTTTTTTTGAAGACAGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCTCCAGAAGCCTAAGGGGAGTTGCTTTTTTTGAAGACAGTGAT  600

seq1  CAAGCAGCACCTTGAAACAAGGCCAGGTGCTGAATTCTGTTCCTCAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGCACCTTGAAACAAGGCCAGGTGCTGAATTCTGTTCCTCAGCTC  650

seq1  TGGCTCATGTAACTTAGGACTTCCCATTGCTTCACCATACCTCTTTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATGTAACTTAGGACTTCCCATTGCTTCACCATACCTCTTTCCAG  700

seq1  TGAGGTGGCAGTGGAAATGTTTTTGCTGTTGCTTCCTAGACATGCTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGCAGTGGAAATGTTTTTGCTGTTGCTTCCTAGACATGCTTAAG  750

seq1  TATCTTCAAATAAATAATTTCCCTCTACCCACACCTCATGCACATGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAAATAAATAATTTCCCTCTACCCACACCTCATGCACATGCCTG  800

seq1  TAATCTCAGGATTCAGGAGGCTGAGGCAGGACTGAAAAAGGTGGCCGGGA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAATCTCAGGATTCAGGAGGCTGAGGCAGGACTGAAAAAGGTGG-CGGGA  849

seq1  CTGATATTGAAACCATCAAAAAAAATTAATACTTATCTTTAAGAGAAGTT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGATATTGAAACCATCAAAAAAAA-TAATACTTATCTTTAAGAGAAGTT  898

seq1  ACCAATTTAGTTTTATATGTAAGAAAACGAGGCTT-GGACAAAGCAGCAC  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCAATTTAGTTTTATATGTAAGAAAACGAGGCTTGGGACAAAGCAGCAC  948

seq1  AGGCTACATCAGAGATGAGTGCCCAGTGACTATGCATGTGACTAAACATG  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGCTACATCAGAGATGAGTGCTCAGTGACTATGCATGTGACTAAACATG  998

seq1  TGACCCTGCAGAGGTCCACATCCAACTAG-ATGAAAATCTTTTCTTACTC  1048
      |||||||||  || |||||||| | |||| ||||||||||||||||||||
seq2  TGACCCTGCGAAGTTCCACATCAACCTAGAATGAAAATCTTTTCTTACTC  1048

seq1  ATGTCCAGTATTTG-ACTTCC-ATCTTAATGCAGAGACCAACTCTTGCAA  1096
      |||| ||||||||| |||||| ||||||||||||||| | |||| ||| |
seq2  ATGT-CAGTATTTGAACTTCCAATCTTAATGCAGAGAACCACTC-TGC-A  1095

seq1  GTTATCT-TAACCAATCACATAGGATCTT-GAAATCT  1131
      | ||||| |||| ||||| |||||||||| |||||||
seq2  GGTATCTCTAACAAATCAAATAGGATCTTGGAAATCT  1132