BAC Information

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BAC

Clone NameB6Ng01-061C23
Chromosome2 (Build37)
Map Location 126,977,661 - 127,100,304
singlet/doubletdoublet
Overlap gene1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7
Upstream geneDtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik
Downstream geneDusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061C23.bB6Ng01-061C23.g
ACCDH881933DH881934
length1,0571,090
definitionDH881933|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C23, 5' end.DH881934|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,977,661 - 126,978,499)(127,099,181 - 127,100,304)
sequence
gaattctttgggggggggacagcaaaggaaatgaggaaaactgttaagtc
aaaaaaaagttagctgcatcacttgttttctagtttctgtatgaagagaa
aattcaggcttaagtgaagtcctgactggatcagcctgtaaggctggatt
ggggtcagcagctttctgaaactgttctgaaagcaattctcctgaggaat
gacattgaagcagtctgaggcaggatcaggtgtcccagcattctcgagag
tagattgttacagctgctttcttggttgtctttttttttttttaagattt
atttatttattatatgtaagtacactgtagctgtcttcagacacaccaga
agaggagtcagatcttgttacggatggttgtgagccaccatgtggttgct
gggatttgaactctggaccttcggaagagcagtcgggtgctcttacccac
tgagccatctcaccagccccggttgtctttttttgaaaacattatttctt
acaagcaatacatagttctgtaccaacaatgtatggaatgtgcaaggtgc
acagttttgccaaagaagactgtctgatctctgtctgtgcagatgaaaga
catctatctgtctttctttttaagttagtttgattatgtaatcaaactgc
aatgtaagtccccattcatgccatctgaaaggacgataatgtaataataa
gtcatgagaattctgtagccagtaaattttattgaccatatgtccatccc
agtcagatttctttatgaatggttgtgagccaccatgtggttgctaggat
ttgaactcaggaccttcggaagagcagtcagtgttcttaactgctgagcc
ctctctccagccctcttttcattttcgtatttctttctgcagtcaagatc
ttcagaggtctccctctgtcatgtctgattttatcattttaggtttgttt
ttgtttctttcttttcttttttcttttggtttggtttggtttttgagaca
ggtttttgtttagccctggctgtcttggaactcatttgtaacaggctggc
atgaacc
gaattccaggacagccagagctacatagtgagactttgcctcagaataaa
gttaaataaaatttaagaacaaaagcaaaagccaaacaaacaaacaaaca
aaaataagattagagttttttcagctactactgatatgagacatatcttg
aaataagacataaactagttcatggcatttttggagcagttagttaatgg
taaaataacaaaaacaaatccaacaaatctcaaggtccatttatgttgtt
tcgataatctaaggctttgtctgtaggagacaccaaactgactgtggcca
ttaagttcctttaagccagatagatttttcactagctaaaaaatacactg
aaaagtttaatgtattctaaatgcacccccccaaaaaaaaactgaaaaag
ggaaatggccaattttctttgtgaaaatttactagaactaatttctcatt
aagtagaattcctcaaactttctgagcagtaaacttaactttttaaaaaa
atgaggtcaatggaacatttccccctatattttcatatttcctaacatcc
ttcctctttttgtttctgtaacttacacacatacacacatacacacacac
acacacacacacacacacacacacacacacacacacagagctgtactttt
ccatgggatttttcccagtgtcacagaacaccagctagcaccaataatag
tcagcaaaattattttgcttaagaagccaactgggctgggcgcctttgat
cccagcacttgggaggcagaggcaggaggatttctgagttcgaggccagc
ctggtctacagagtaagttccaggacagccagggctactcagagaaccct
gtctcgaaaaaacaaaaacaaacaaacaaacaaaagaagccaactggata
aaaattctagacaggtattgagagatgttgaggggaggggagagacccct
cacatttgcctctaagtctgaggcctgagttgatccaggtttcacatgcg
aagaacactacaatgttctttgacgccccaaggtgtagtgtccaaacata
cttaccactgaataatatgagtatataatcaaatgagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126977661_126978499
seq2: B6Ng01-061C23.b_282_1103

seq1  CAGCATTCTCGAGAGTAGATTGTTACAGCTGCTTTCTTGGTTGTCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCTCGAGAGTAGATTGTTACAGCTGCTTTCTTGGTTGTCTTTTT  50

seq1  TTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTC  100

seq1  TTCAGACACACCAGAAGAGGAGTCAGATCTTGTTACGGATGGTTGTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACACCAGAAGAGGAGTCAGATCTTGTTACGGATGGTTGTGAGC  150

seq1  CACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCG  200

seq1  GGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCGGTTGTCTTTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCGGTTGTCTTTTTTTG  250

seq1  AAAACATTATTTCTTACAAGCAATACATAGTTCTGTACCAACAATGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTATTTCTTACAAGCAATACATAGTTCTGTACCAACAATGTATG  300

seq1  GAATGTGCAAGGTGCACAGTTTTGCCAAAGAAGACTGTCTGATCTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGCAAGGTGCACAGTTTTGCCAAAGAAGACTGTCTGATCTCTGTC  350

seq1  TGTGCAGATGAAAGACATCTATCTGTCTTTCTTTTTAAGTTAGTTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGATGAAAGACATCTATCTGTCTTTCTTTTTAAGTTAGTTTGATT  400

seq1  ATGTAATCAAACTGCAATGTAAGTCCCCATTCATGCCATCTGAAAGGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCAAACTGCAATGTAAGTCCCCATTCATGCCATCTGAAAGGACG  450

seq1  ATAATGTAATAATAAGTCATGAGAATTCTGTAGCCAGTAAATTTTATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTAATAATAAGTCATGAGAATTCTGTAGCCAGTAAATTTTATTGA  500

seq1  CCATATGTCCATCCCAGTCAGATTTCTTTATGAATGGTTGTGAGCCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGTCCATCCCAGTCAGATTTCTTTATGAATGGTTGTGAGCCACCA  550

seq1  TGTGGTTGCTAGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGCTAGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGTT  600

seq1  CTTAACTGCTGAGCCCTCTCTCCAGCCCTCTTTTCATTTTCGTATTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGCTGAGCCCTCTCTCCAGCCCTCTTTTCATTTTCGTATTTCTT  650

seq1  TCTGCAGTCAAGATCTTCAGGAGGTCTCCCTCTGTCATGTCTGATTTTTA  700
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TCTGCAGTCAAGATCTTCA-GAGGTCTCCCTCTGTCATGTCTGA-TTTTA  698

seq1  TCATTTTAGGTTTGTTTTTTGTTTTCTTTTCTTTTCTTTTTTTCTTTTTG  750
      |||||||||||||| |||||||||   ||||||||| |||||||||||  
seq2  TCATTTTAGGTTTG-TTTTTGTTT--CTTTCTTTTC-TTTTTTCTTTT--  742

seq1  GTTTTGGTTTTGGTTTTTTGAGACAGGGTTTCTCTGTTTAGCCCTGGCTG  800
      | ||||||||  | ||||||||||||| |||   ||||||||||||||||
seq2  GGTTTGGTTT--GGTTTTTGAGACAGGTTTT---TGTTTAGCCCTGGCTG  787

seq1  TCCTGGAACTCACTTTGTAGAACAGGCTGGCCTTGAACC  839
      || ||||||||| |||||  |||||||||| | ||||||
seq2  TCTTGGAACTCA-TTTGT--AACAGGCTGG-CATGAACC  822

seq1: chr2_127099181_127100304
seq2: B6Ng01-061C23.g_67_1156 (reverse)

seq1  TTTCTCATTTTATATTTTTATTATATTTATTTAT-TTATTCATGTGGTAA  49
      |||||||||| ||          ||| || | || ||||||| |||||||
seq2  TTTCTCATTTGAT----------TATATACTCATATTATTCA-GTGGTAA  39

seq1  GTGTTGCTTTTGAACACTACAACCTTTGTGTGGCGATCAAAGAACAATTT  99
      || |    |||| ||||||| ||||   || |||| ||||||||||  ||
seq2  GTAT---GTTTGGACACTAC-ACCT---TGGGGCG-TCAAAGAACA--TT  79

seq1  GTAGTTGTTTCTTCTGGCATGTGGAAACCTGGGATCAAACTCAGGCCCTC  149
      |||||   ||||||  |||||| ||||||| ||||| |||||||| ||||
seq2  GTAGT--GTTCTTC--GCATGT-GAAACCT-GGATC-AACTCAGG-CCTC  121

seq1  AGACTTAGAGGCAAATGTGTGGTGGTTCTCTCCCCCTCCCCTCAACATCT  199
      ||||||||||||||||||| |  || ||||| ||||||||||||||||||
seq2  AGACTTAGAGGCAAATGTGAG--GGGTCTCT-CCCCTCCCCTCAACATCT  168

seq1  CTCAATACCTGTCTAGAATTTTTATCCAGTTGGCTTCTTTTTGTTTGTTT  249
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCAATACCTGTCTAGAATTTTTATCCAGTTGGCTTC-TTTTGTTTGTTT  217

seq1  GTTTGTTTTTGTTTTTTTCGAGACAGGGTTTCTCTGAGTAGCCCTGGCTG  299
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  GTTTGTTTTTG-TTTTTTCGAGACAGGG-TTCTCTGAGTAGCCCTGGCTG  265

seq1  TCCTGGAACTTACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTTACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTC  315

seq1  CTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCGCCCAGCCCAGTTGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCGCCCAGCCCAGTTGGC  365

seq1  TTCTTAAGCAAAATAATTTTGCTGACTATTATTGGTGCTAGCTGGTGTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGCAAAATAATTTTGCTGACTATTATTGGTGCTAGCTGGTGTTC  415

seq1  TGTGACACTGGGAAAAATCCCATGGAAAAGTACAGCTCTGTGTGTGTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACTGGGAAAAATCCCATGGAAAAGTACAGCTCTGTGTGTGTGTG  465

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTATGTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTATGTGTG  515

seq1  TAAGTTACAGAAACAAAAAGAGGAAGGATGTTAGGAAATATGAAAATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTACAGAAACAAAAAGAGGAAGGATGTTAGGAAATATGAAAATATA  565

seq1  GGGGGAAATGTTCCATTGACCTCATTTTTTTAAAAAGTTAAGTTTACTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAATGTTCCATTGACCTCATTTTTTTAAAAAGTTAAGTTTACTGC  615

seq1  TCAGAAAGTTTGAGGAATTCTACTTAATGAGAAATTAGTTCTAGTAAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGTTTGAGGAATTCTACTTAATGAGAAATTAGTTCTAGTAAATT  665

seq1  TTCACAAAGAAAATTGGCCATTTCCCTTTTTCAGTTTTTTTTTGGGGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAGAAAATTGGCCATTTCCCTTTTTCAGTTTTTTTTTGGGGGGG  715

seq1  TGCATTTAGAATACATTAAACTTTTCAGTGTATTTTTTAGCTAGTGAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAGAATACATTAAACTTTTCAGTGTATTTTTTAGCTAGTGAAAA  765

seq1  ATCTATCTGGCTTAAAGGAACTTAATGGCCACAGTCAGTTTGGTGTCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTGGCTTAAAGGAACTTAATGGCCACAGTCAGTTTGGTGTCTCC  815

seq1  TACAGACAAAGCCTTAGATTATCGAAACAACATAAATGGACCTTGAGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACAAAGCCTTAGATTATCGAAACAACATAAATGGACCTTGAGATT  865

seq1  TGTTGGATTTGTTTTTGTTATTTTACCATTAACTAACTGCTCCAAAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGATTTGTTTTTGTTATTTTACCATTAACTAACTGCTCCAAAAATG  915

seq1  CCATGAACTAGTTTATGTCTTATTTCAAGATATGTCTCATATCAGTAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAACTAGTTTATGTCTTATTTCAAGATATGTCTCATATCAGTAGTA  965

seq1  GCTGAAAAAACTCTAATCTTATTTTTGTTTGTTTGTTTGTTTGGCTTTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAAAACTCTAATCTTATTTTTGTTTGTTTGTTTGTTTGGCTTTTG  1015

seq1  CTTTTGTTCTTAAATTTTATTTAACTTTATTCTGAGGCAAAGTCTCACTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCTTAAATTTTATTTAACTTTATTCTGAGGCAAAGTCTCACTA  1065

seq1  TGTAGCTCTGGCTGTCCTGGAATTC  1124
      |||||||||||||||||||||||||
seq2  TGTAGCTCTGGCTGTCCTGGAATTC  1090