BAC Information

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BAC

Clone NameB6Ng01-061P07
Chromosome2 (Build37)3 (Build37)
Map Location 142,776,666 - 142,777,69862,461,668 - 62,462,750
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061P07.bB6Ng01-061P07.g
ACCDH882490DH882491
length1,0251,071
definitionDH882490|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P07, 5' end.DH882491|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,666 - 142,777,698)(62,461,668 - 62,462,750)
sequence
gaattctttgttcagttctgagccccattttttaatagggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaatgattctttcccaatctgttggtggtct
ttttgtcttactgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccattactgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctatataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattcttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgctaccctaggttttttgttattccagatg
aatttgcaaattgctccttctaattggttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgtagatcctgccaatccataagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagattgaagtttttatcatac
agatcttttacttccttagttagagtcatgccaagatatttatattattt
gtgactatgagaaggtgttgtttccttatttcattcttcagcctgtttat
tctttgtatagagaaggccatcact
gaattctaaattttataaaactaagacgtaagacaagatttggggaccaa
gacaaactttgaatatatgctaggtatatatttctactaggcataaatat
ttgaaaaataacttagtcttaatattgtgtttaagtaaaaaaaaatgatc
ttcatttagaggtgaagttgcatggtttctgtaaccattattttgaagta
aactgagctttctttcttgcatacactttgttttccatagaacgcacagt
ttatgatgatgaaattcaattttctctaaagtgttacatagtatatagaa
gttcaaagagatgtattgaatttggatctggttaattttgttgtgtgatg
tttattttatttcttcagtttttttatgctaaggttgaattttgctttta
aagagttacatattttctcatcctatatcttactttgtttagtaaatgga
atggtgatccagtaactataaatgaaatactacacaatactttcagaaaa
tattttaagtattcccaaaacaaaagccaagaactaagcatgttgctatt
gtaccccagaaatcttttgtgtcccaggacacaagaaaagattccaaaca
ataaaataactaatattctactaatcacaagtttccaaagtacagttata
tttaaaaagcaattctcaaattcatctaaaaaaacagaatagaaaaaaaa
atcttaacaataaaagaacttctgggggaatcaccatccctgacctcaag
ctatactacagagcaatagcagtaaaaactgcatggtattgatacagaga
caaacaggttgggatagacaggttgatcaatggaatagaactgaagacac
agggggaaaacacatacttatggacacttgatctttgacaaagaagccaa
aaatacacatagaaaaagaaagcatcttcatatggtactggtctaactga
cagtctgttggtagacatgaaatagatctatttgccacttgcacaaagct
caactctagtggatcaggatttcaacataaaccagatagataactggatt
tatagtgaggaaagtgtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776666_142777698
seq2: B6Ng01-061P07.b_46_618 (reverse)

seq1  TGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGA  50

seq1  AATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAA  100

seq1  CCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAAC  150
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  CCATCCAGTGGAAGAAAGACAGCATTTTCAAGAATTGGTGCTGGCACAAC  150

seq1  TGGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTG  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTG  200

seq1  TACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGA  250

seq1  CACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGC  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACTGAAACTTATATAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGC  300

seq1  ACAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATC  350
      |||||||| ||||||||||||||||||| |||||||||| ||||||||||
seq2  ACAGGGGAAAAATTCCTGAACAGAACAGTAATGGCTTGTACTGTAAGATC  350

seq1  GAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAA  400

seq1  AAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATC  450
      ||||||| |||| ||||||||||||||||||||||||||||||||| |||
seq2  AAGACACTGTCAGTAAGACAAAAAGACCACCAACAGATTGGGAAAGAATC  450

seq1  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGA  500
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGA  500

seq1  ACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGG  550
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCTATTAAAAAATGGG  550

seq1  GCTCACAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTG  600
      ||||| ||            ||| |||||    |||              
seq2  GCTCAGAA----------CTGAACAAAGA----ATTC-------------  573

seq1  CTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACT  650
                                                        
seq2  --------------------------------------------------  573

seq1  TATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATA  700
                                                        
seq2  --------------------------------------------------  573

seq1  AAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGA  750
                                                        
seq2  --------------------------------------------------  573

seq1  AGATATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTG  800
                                                        
seq2  --------------------------------------------------  573

seq1  CTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTC  850
                                                        
seq2  --------------------------------------------------  573

seq1  TGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTG  900
                                                        
seq2  --------------------------------------------------  573

seq1  GGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACA  950
                                                        
seq2  --------------------------------------------------  573

seq1  TATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATT  1000
                                                        
seq2  --------------------------------------------------  573

seq1  AAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1033
                                       
seq2  ---------------------------------  573

seq1: chr3_62461668_62462750
seq2: B6Ng01-061P07.g_70_1140 (reverse)

seq1  TTCC-CACTTTCTCTACTATAAAATTCAGTTTATCTATCTGGTTTTATGT  49
      |||| |||||||   ||||| |||| ||| |||||||||||| |||||||
seq2  TTCCACACTTTCCTCACTAT-AAATCCAG-TTATCTATCTGG-TTTATGT  47

seq1  TGAAATCCTTGATCCACTTAGAGTTGAGCTTTGTGCAAGGTGGCAAATAG  99
      |||||||| |||||||| |||||||||||||||||||| |||||||||||
seq2  TGAAATCC-TGATCCAC-TAGAGTTGAGCTTTGTGCAA-GTGGCAAATAG  94

seq1  ATCTATTTTCATTGTTCTACCAACAGACTGTCAGTTAGACCAGTACCATA  149
      ||||| ||||||   |||||||||||||||||||||||||||||||||||
seq2  ATCTA-TTTCAT--GTCTACCAACAGACTGTCAGTTAGACCAGTACCATA  141

seq1  TTGAAGATGCTTTCTTTTTTCTATTGTGTATTTTTGGCTTCTTTGTCAAA  199
       ||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  -TGAAGATGCTTTC-TTTTTCTA-TGTGTATTTTTGGCTTCTTTGTCAAA  188

seq1  GATCAAGTGTCCATAAGTATGTGTTTTTCCCCCTGTGTCTTCAGTTCTAT  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATCAAGTGTCCATAAGTATGTG-TTTTCCCCCTGTGTCTTCAGTTCTAT  237

seq1  TCCATTGATCAACCTGTCTATCCCAACCTGTTTGTCTCTGTATCAATACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGATCAACCTGTCTATCCCAACCTGTTTGTCTCTGTATCAATACC  287

seq1  ATGCAGTTTTTACTGCTATTGCTCTGTAGTATAGCTTGAGGTCAGGGATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTTTTACTGCTATTGCTCTGTAGTATAGCTTGAGGTCAGGGATG  337

seq1  GTGATTCCCCCAGAAGTTCTTTTATTGTTAAGATTTTTTTTTCTATTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCCCCAGAAGTTCTTTTATTGTTAAGATTTTTTTTTCTATTCTG  387

seq1  TTTTTTTAGATGAATTTGAGAATTGCTTTTTAAATATAACTGTACTTTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGATGAATTTGAGAATTGCTTTTTAAATATAACTGTACTTTGG  437

seq1  AAACTTGTGATTAGTAGAATATTAGTTATTTTATTGTTTGGAATCTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGTGATTAGTAGAATATTAGTTATTTTATTGTTTGGAATCTTTTC  487

seq1  TTGTGTCCTGGGACACAAAAGATTTCTGGGGTACAATAGCAACATGCTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCTGGGACACAAAAGATTTCTGGGGTACAATAGCAACATGCTTA  537

seq1  GTTCTTGGCTTTTGTTTTGGGAATACTTAAAATATTTTCTGAAAGTATTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGCTTTTGTTTTGGGAATACTTAAAATATTTTCTGAAAGTATTG  587

seq1  TGTAGTATTTCATTTATAGTTACTGGATCACCATTCCATTTACTAAACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTATTTCATTTATAGTTACTGGATCACCATTCCATTTACTAAACAA  637

seq1  AGTAAGATATAGGATGAGAAAATATGTAACTCTTTAAAAGCAAAATTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATATAGGATGAGAAAATATGTAACTCTTTAAAAGCAAAATTCAA  687

seq1  CCTTAGCATAAAAAAACTGAAGAAATAAAATAAACATCACACAACAAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCATAAAAAAACTGAAGAAATAAAATAAACATCACACAACAAAAT  737

seq1  TAACCAGATCCAAATTCAATACATCTCTTTGAACTTCTATATACTATGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGATCCAAATTCAATACATCTCTTTGAACTTCTATATACTATGTA  787

seq1  ACACTTTAGAGAAAATTGAATTTCATCATCATAAACTGTGCGTTCTATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAGAGAAAATTGAATTTCATCATCATAAACTGTGCGTTCTATGG  837

seq1  AAAACAAAGTGTATGCAAGAAAGAAAGCTCAGTTTACTTCAAAATAATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGTGTATGCAAGAAAGAAAGCTCAGTTTACTTCAAAATAATGG  887

seq1  TTACAGAAACCATGCAACTTCACCTCTAAATGAAGATCATTTTTTTTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAACCATGCAACTTCACCTCTAAATGAAGATCATTTTTTTTTAC  937

seq1  TTAAACACAATATTAAGACTAAGTTATTTTTCAAATATTTATGCCTAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACAATATTAAGACTAAGTTATTTTTCAAATATTTATGCCTAGTA  987

seq1  GAAATATATACCTAGCATATATTCAAAGTTTGTCTTGGTCCCCAAATCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATACCTAGCATATATTCAAAGTTTGTCTTGGTCCCCAAATCTT  1037

seq1  GTCTTACGTCTTAGTTTTATAAAATTTAGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  GTCTTACGTCTTAGTTTTATAAAATTTAGAATTC  1071