BAC Information

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BAC

Clone NameB6Ng01-062N05
Chromosome2 (Build37)
Map Location 180,912,155 - 181,064,366
singlet/doubletdoublet
Overlap gene2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1
Upstream geneLama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2
Downstream geneArfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062N05.bB6Ng01-062N05.g
ACCDH883098DH883099
length1,091906
definitionDH883098|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N05, 5' end.DH883099|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,063,270 - 181,064,366)(180,912,155 - 180,913,059)
sequence
gaattccaggacagcccagggcagttacacagagaaaccttgtcttgaaa
aacaaacaaatcaagtcccattctagatcacaggttataagaaacaaaaa
aacaggggccgggcgtggtggcgcacgcctttgatcccagcacttgggag
gcagaggcaggcggatttctgagttcgaggacagcctggtctacagagtg
agttccaggacagcaaggaatataaagagaaaccctgtctcagaaaaacc
acaaaaaaaaaaaaaaaaaaagaaagaaagaaacacaagaaagacagagc
aagcaagagggagggaaggaaggagagagagagaggaaaggcaggttgat
aggcagcttgttttctccttggtataacaaagtctcaagtcgcaatctgt
cattctttttgcagtaccaggaatggaatccaggccttcacacaatcagg
gaagagctacatacagccttagccgttcaggattttctcatcagcacttc
aatgtacagagcggtaagtcagggatgtgtgtgggagagggggcaaagag
gatcacaagtgcattctcagtcacacagcaaatcctcaagtcagcctggg
ctttgagactctgctctgtctcgaataagggaaaataaataaaaagctat
acatttactaccctcagaagggagctaagcttcacacacacagaaggaga
gtcagccatggtatactaagccggagagagcatttggagaataagcacag
acaaaacccagcatccacatgcaaacacttcacagtggtcatcctgaggt
gaagtacaggacagggaacagagctgattccgtaggtctcacctcatatt
cctcagaactgcttacattttttcacagtgttggtttcataaaaggaaaa
gtaaatgtattgtgcttctcataggatgagaatctatcaaggaaggacaa
agcagccacagctcactgggaagaggtcttacttttgttgcttccatcct
ggaaaaggtctccaaattcaggatggggtagccaaatcttgcttcaggat
ttcgctgcaggtaagatacagagtaggccagatgcttcagg
gaattcactttgtagaccaggctgtccttgaactcagaagtctgcctgcc
tctgcctcccgagtgctgggattaaaggtgtgcgccaccactgcccggct
agcattgacttttttttttttttttttaatatatgtgagtacactgttgc
tgttttcagacacacaccagaagagggcatcagatctcattatagatgaa
tgtgagccaccacgtgtttgctgggaattgaacacaggactctggaagag
cagccagtgctcttcttaactgctgagccatctctccagccccagcacaa
tgacctttgtgtattgactttgtgtcttgcaatcttgctgccctcaacac
ctgattttctttttcatagattccttgagaccctctacaaaggcaattac
cattacctgttaatagagataatttcagatctccatttacgatctgcatg
cctcttgtttctttgttttatttttctggctgagaaaataaatttctgca
tggctcttgtttcttgtgggtatggaaagactgtagtgagagtgaagagt
cctatactgcaaccagtgcatgtcttgctgccaaaactttatctatactc
ctagattgaagatgttcctttctggtactgtgtttgtggacggccctggt
gctattgaattttgatgttaattctgcctttccaggaggggttgtctgga
cagaggaatgagtcaagtacttgggtaacttcttgtgaaccttctctcaa
atgaattaagaggccaaccactgggtgagtaggcaggacttccgggttga
cagaggaagagaggaagcaaggagagaattagggttttttttttttttgg
atgaggatagcaagaaagcaaaatgtaactacttagtgtctcccagctta
tatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181063270_181064366
seq2: B6Ng01-062N05.b_46_1136 (reverse)

seq1  CCTG-AGCATCTGTGCTTACTCTTGTATCTTACCTGCAGCGAAATTCCTG  49
      |||| |||||||| || ||||| ||||||||||||||||||||| |||||
seq2  CCTGAAGCATCTG-GCCTACTC-TGTATCTTACCTGCAGCGAAA-TCCTG  47

seq1  GAGCAAGATTTGGCTACCCCCATCCTGGATATTGAGGACCTTGTCAAGAA  99
       ||||||||||||||| |||||||||| || |||  |||||| || || |
seq2  AAGCAAGATTTGGCTA-CCCCATCCTGAAT-TTGGAGACCTTTTCCAGGA  95

seq1  TGGAAGCAAACAAAAGTAAGACCCTCTCCCAGTGAGGCTGTGGCTGCTTT  149
      ||||||| |||||||||||||||   ||||||||| ||||||||||||||
seq2  TGGAAGC-AACAAAAGTAAGACCTCTTCCCAGTGA-GCTGTGGCTGCTTT  143

seq1  GTCCTTCCTTGATAGATTCTCATCCTATGGGAAGCACAATACATTTACTT  199
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCCTTCCTTGATAGATTCTCATCCTATGAGAAGCACAATACATTTACTT  193

seq1  TTCCTTTTATGAAACCAACACTGTGAAAAAATGTAAGCAGTTCTGAGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTATGAAACCAACACTGTGAAAAAATGTAAGCAGTTCTGAGGAA  243

seq1  TATGAGGTGAGACCTACGGAATCAGCTCTGTTCCCTGTCCTGTACTTCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTGAGACCTACGGAATCAGCTCTGTTCCCTGTCCTGTACTTCAC  293

seq1  CTCAGGATGACCACTGTGAAGTGTTTGCATGTGGATGCTGGGTTTTGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGATGACCACTGTGAAGTGTTTGCATGTGGATGCTGGGTTTTGTCT  343

seq1  GTGCTTATTCTCCAAATGCTCTCTCCGGCTTAGTATACCATGGCTGACTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTATTCTCCAAATGCTCTCTCCGGCTTAGTATACCATGGCTGACTC  393

seq1  TCCTTCTGTGTGTGTGAAGCTTAGCTCCCTTCTGAGGGTAGTAAATGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGTGTGTGTGAAGCTTAGCTCCCTTCTGAGGGTAGTAAATGTAT  443

seq1  AGCTTTTTATTTATTTTCCCTTATTCGAGACAGAGCAGAGTCTCAAAGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTATTTATTTTCCCTTATTCGAGACAGAGCAGAGTCTCAAAGCC  493

seq1  CAGGCTGACTTGAGGATTTGCTGTGTGACTGAGAATGCACTTGTGATCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGACTTGAGGATTTGCTGTGTGACTGAGAATGCACTTGTGATCCT  543

seq1  CTTTGCCCCCTCTCCCACACACATCCCTGACTTACCGCTCTGTACATTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCCCCTCTCCCACACACATCCCTGACTTACCGCTCTGTACATTGA  593

seq1  AGTGCTGATGAGAAAATCCTGAACGGCTAAGGCTGTATGTAGCTCTTCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGATGAGAAAATCCTGAACGGCTAAGGCTGTATGTAGCTCTTCCC  643

seq1  TGATTGTGTGAAGGCCTGGATTCCATTCCTGGTACTGCAAAAAGAATGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTGTGAAGGCCTGGATTCCATTCCTGGTACTGCAAAAAGAATGAC  693

seq1  AGATTGCGACTTGAGACTTTGTTATACCAAGGAGAAAACAAGCTGCCTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCGACTTGAGACTTTGTTATACCAAGGAGAAAACAAGCTGCCTAT  743

seq1  CAACCTGCCTTTCCTCTCTCTCTCTCCTTCCTTCCCTCCCTCTTGCTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGCCTTTCCTCTCTCTCTCTCCTTCCTTCCCTCCCTCTTGCTTGC  793

seq1  TCTGTCTTTCTTGTGTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTCTTGTGTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTGTGG  843

seq1  TTTTTCTGAGACAGGGTTTCTCTTTATATTCCTTGCTGTCCTGGAACTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAGACAGGGTTTCTCTTTATATTCCTTGCTGTCCTGGAACTCA  893

seq1  CTCTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCT  943

seq1  CCCAAGTGCTGGGATCAAAGGCGTGCGCCACCACGCCCGGCCCCTGTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGGGATCAAAGGCGTGCGCCACCACGCCCGGCCCCTGTTTT  993

seq1  TTTGTTTCTTATAACCTGTGATCTAGAATGGGACTTGATTTGTTTGTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTATAACCTGTGATCTAGAATGGGACTTGATTTGTTTGTTTT  1043

seq1  TCAAGACAAGGTTTCTCTGTGTAACTGCCCTGGGCTGTCCTGGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACAAGGTTTCTCTGTGTAACTGCCCTGGGCTGTCCTGGAATTC  1091

seq1: chr2_180912155_180913059
seq2: B6Ng01-062N05.g_71_976

seq1  GAATTCACTTTGTAGACCAGGCTGTCCTTGAACTCAGAAGTCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGTCCTTGAACTCAGAAGTCTGCCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCGGCT  100

seq1  AGCATTGACTTTTTTTTTTTTTTTTTTAATATATGTGAGTACACTGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGACTTTTTTTTTTTTTTTTTTAATATATGTGAGTACACTGTTGC  150

seq1  TGTTTTCAGACACACACCAGAAGAGGGCATCAGATCTCATTATAGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGACACACACCAGAAGAGGGCATCAGATCTCATTATAGATGAA  200

seq1  TGTGAGCCACCACGTGTTTGCTGGGAATTGAACACAGGACTCTGGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCACGTGTTTGCTGGGAATTGAACACAGGACTCTGGAAGAG  250

seq1  CAGCCAGTGCTCTTCTTAACTGCTGAGCCATCTCTCCAGCCCCAGCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGCTCTTCTTAACTGCTGAGCCATCTCTCCAGCCCCAGCACAA  300

seq1  TGACCTTTGTGTATTGACTTTGTGTCTTGCAATCTTGCTGCCCTCAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTGTGTATTGACTTTGTGTCTTGCAATCTTGCTGCCCTCAACAC  350

seq1  CTGATTTTCTTTTTCATAGATTCCTTGAGACCCTCTACAAAGGCAATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTCTTTTTCATAGATTCCTTGAGACCCTCTACAAAGGCAATTAC  400

seq1  CATTACCTGTTAATAGAGATAATTTCAGATCTCCATTTACGATCTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTGTTAATAGAGATAATTTCAGATCTCCATTTACGATCTGCATG  450

seq1  CCTCTTGTTTCTTTGTTTTATTTTTCTGGCTGAGAAAATAAATTTCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTTTCTTTGTTTTATTTTTCTGGCTGAGAAAATAAATTTCTGCA  500

seq1  TGGCTCTTGTTTCTTGTGGGTATGGAAAGACTGTAGTGAGAGTGAAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTGTTTCTTGTGGGTATGGAAAGACTGTAGTGAGAGTGAAGAGT  550

seq1  CCTATACTGCAACCAGTGCATGTCTTGCTGCCAAAACTTTATCTATACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACTGCAACCAGTGCATGTCTTGCTGCCAAAACTTTATCTATACTC  600

seq1  CTAGATTGAAGATGTTCCTTTCTGGTACTGTGTTTGTGGACGGCCCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTGAAGATGTTCCTTTCTGGTACTGTGTTTGTGGACGGCCCTGGT  650

seq1  GCTATTGAATTTTGATGTTAATTCTGCCTTTCCAGGAGGGGTTGTCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGAATTTTGATGTTAATTCTGCCTTTCCAGGAGGGGTTGTCTGGA  700

seq1  CAGAGGAATGAGTCAAGTACTTGGGTAACTTCTTGTGAACCTTCCCCCAA  750
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  CAGAGGAATGAGTCAAGTACTTGGGTAACTTCTTGTGAACCTTCTCTCAA  750

seq1  ATGAATTAAGAGGCCAACCACTGGGTGAGTAGGCAGGACTTCCGGGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGAATTAAGAGGCCAACCACTGGGTGAGTAGGCAGGACTTCCGGGTTG-  799

seq1  ACAGAGGAAGAGAGGAAGC-AGGAGAGAATTAGGGTTTTTTTTTTTTTTG  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAGAGGAAGAGAGGAAGCAAGGAGAGAATTAGGGTTTTTTTTTTTTTTG  849

seq1  GATGAGGATAGCAAGAGAGCAAGATGTAGCTAC-TAGTGTCTCCCAGCTT  898
      |||||||||||||||| ||||| ||||| |||| ||||||||||||||||
seq2  GATGAGGATAGCAAGAAAGCAAAATGTAACTACTTAGTGTCTCCCAGCTT  899

seq1  ATATGGT  905
      |||| ||
seq2  ATATAGT  906