BAC Information

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BAC

Clone NameB6Ng01-063E01
Chromosome2 (Build37)13 (Build37)
Map Location 137,431,500 - 137,432,66737,828,501 - 37,828,918
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSnap25, LOC668911, Mkks, 2210009G21Rik, Jag1
Downstream geneBtbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063E01.bB6Ng01-063E01.g
ACCDH883403DH883404
length1,153988
definitionDH883403|Mus musculus domesticus DNA, BAC clone: B6Ng01-063E01, 5' end.DH883404|Mus musculus domesticus DNA, BAC clone: B6Ng01-063E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(137,431,500 - 137,432,667)(37,828,501 - 37,828,918)
sequence
gaattccttccaaagttagaaactaaagaaaattcacatcacttttattt
gctttcactacagagttctgatggcactgagaccaggaatatttagtaat
gtgaaattattatatcccttttattttccaaagtgtttgaacctttggca
aaaattaaaaaaatatgatctgttatacgttgcaggttatatttgagggt
cagtaacagttgagaatatttgcttgtttaaaagtgtgtgaagaaatcag
aaatctataagcctgaaatgaaatattcgtaactcttccttttcgttatc
ttcctcacagttcttagcttcttagggacaaaaggagcaaccatacacca
gatatattttatctacaataatgtttttttttttaatttaaacttgaata
aacaaaaagaaatcagacaacttaattataaattagggtcaattcatgtc
catttggcaacatgggacctgaagtgatgactctgtattctgtcaagtat
ggcacagagacattcttgtgttctgttcatcgatgaccacatagaacaca
taacagtgagagaatgtaggagtgcaaacccattccaagccttggccaag
accatgcccacataccaacaccttaatactctcacagactcaacgtcagt
gcttacagaactctctccctgtggacgacccacgtagccttcaacctagg
ctttctgtatcacggtttctctttattttctttgaatttttaagggataa
gacaacataaaaacaaaacctatctttaggtctttggattgcttacaatt
ctaaagccagattagatttttgttaagactgccacgtacacgtataaata
tgtcttcttgaactgttgccaatatctatacatacataatgagaaggatt
cttggagggaataaaaccctgtcaatctgattatttcttctcctacgtga
gagacaggaatgcacagaggttgagtgttcttctcacctcattctctcat
tccaggctagcaaggcatgtccccaagcaaagcagtgttgtatcattagg
aatggaatacaagaccgagtgctcagcatctcattgggcaaatatagtct
gattgactttgtcgaatcaagaaacaaatatcagctccttaccttatatg
tca
gaattctctgctatatccaaatgattcttgtcatgtttttcattgggaga
tatttaattatttcttttattttattggttactataggactatttaaatt
atttactttacctcaatttaattttgatagtggatatcatacatatctat
aatttatacacacacacacacacacacacacacacacacacacacacgaa
cacacacacacacacacacacacacacacacacatatatatatatgcatt
gtttagaatttttcacttagtagaatatagtttttgaggcatatactcat
ttgattctctgaactttcttaggatttgttgtaatattactattttactt
acaattttattttatttttcttcttttggtttattgagacagggtttctc
tgtgtagccctggctgtcctggaactcactctgtagactaggctggcctc
aaactcagaatctgcctgcctctgcctcccaagtgctgggattaaaggcg
tgtgccactactgcccagctacttaggattttattctcatttgttatttt
tctctttatttcggttaatttgttgacttatcaatctttttaaagaagca
acatctcatttctttgatcccttatattctttttttcattaacttcagac
ctgattttgagtttctttactcatttactattttggcactttttcatttc
ttttctctccgccacaaaggtttttgagtgcattttatggttgttaatgt
gagatggccacatcttttgaaggagtacttagtattatgtgcttcataac
acatatgttgggttttcattttcattccgttgtaagaattttgtaaattt
ctttcttgacttctctcatgacacattttcattgattagtgtttcttttc
tgtcctcagtttaatgtgctttctgccattctgtatcagcttaagcatgt
gtgcagatgaactcagacatttctcagtttctatattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_137431500_137432667
seq2: B6Ng01-063E01.b_45_1197 (reverse)

seq1  TGACATATAAGGTAATGAAGCTGATTATTTGTTTCTTGATTCTGACAATA  50
      ||||||||||||||| | |||||| ||||||||||||||||| ||||| |
seq2  TGACATATAAGGTAA-GGAGCTGA-TATTTGTTTCTTGATTC-GACAA-A  46

seq1  GTCATTCAGACTAATATTGGCCAATGAGATGCTGAAAACCAACTCTGTCT  100
      |||| ||||||||   ||| |||||||||||||||      |||| ||||
seq2  GTCAATCAGACTATATTTGCCCAATGAGATGCTGA----GCACTCGGTCT  92

seq1  GTGTATTTCCATTTCTAATGATACAACACTGCCTCTGCTTTGAGAACATG  150
       |||| ||||||| ||||||||||||||||| || ||| ||| | |||||
seq2  -TGTA-TTCCATTCCTAATGATACAACACTG-CTTTGC-TTGGGGACATG  138

seq1  CCCTGGCTAGCCTGGAATGAGAGAATGAGGTGGAGAAGAACACTCAACCT  200
       ||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  -CCTTGCTAGCCTGGAATGAGAGAATGAGGT-GAGAAGAACACTCAACCT  186

seq1  CTGTGCATTCCTGTCTCTCACGTAGGAGAAGAAATAATCAGATTGACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATTCCTGTCTCTCACGTAGGAGAAGAAATAATCAGATTGACAGG  236

seq1  GTTTTATTTCCCTCCAAGAATCCTTCTCATTATGTATGTATAGATATTGG  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTA-TTCCCTCCAAGAATCCTTCTCATTATGTATGTATAGATATTGG  285

seq1  CAACAGTTCAAGAAGACATATTTATACGTGTACGTGGCAGTCTTAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTTCAAGAAGACATATTTATACGTGTACGTGGCAGTCTTAACAAA  335

seq1  AATCTAATCTGGCTTTAGAATTGTAAGCAATCCAAAGACCTAAAGATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATCTGGCTTTAGAATTGTAAGCAATCCAAAGACCTAAAGATAGG  385

seq1  TTTTGTTTTTATGTTGTCTTATCCCTTAAAAATTCAAAGAAAATAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTATGTTGTCTTATCCCTTAAAAATTCAAAGAAAATAAAGAG  435

seq1  AAACCGTGATACAGAAAGCCTAGGTTGAAGGCTACGTGGGTCGTCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGTGATACAGAAAGCCTAGGTTGAAGGCTACGTGGGTCGTCCACAG  485

seq1  GGAGAGAGTTCTGTAAGCACTGACGTTGAGTCTGTGAGAGTATTAAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGTTCTGTAAGCACTGACGTTGAGTCTGTGAGAGTATTAAGGTG  535

seq1  TTGGTATGTGGGCATGGTCTTGGCCAAGGCTTGGAATGGGTTTGCACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATGTGGGCATGGTCTTGGCCAAGGCTTGGAATGGGTTTGCACTCC  585

seq1  TACATTCTCTCACTGTTATGTGTTCTATGTGGTCATCGATGAACAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTCTCACTGTTATGTGTTCTATGTGGTCATCGATGAACAGAACA  635

seq1  CAAGAATGTCTCTGTGCCATACTTGACAGAATACAGAGTCATCACTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGTCTCTGTGCCATACTTGACAGAATACAGAGTCATCACTTCAG  685

seq1  GTCCCATGTTGCCAAATGGACATGAATTGACCCTAATTTATAATTAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGTTGCCAAATGGACATGAATTGACCCTAATTTATAATTAAGTT  735

seq1  GTCTGATTTCTTTTTGTTTATTCAAGTTTAAATTAAAAAAAAAAACATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTTCTTTTTGTTTATTCAAGTTTAAATTAAAAAAAAAAACATTA  785

seq1  TTGTAGATAAAATATATCTGGTGTATGGTTGCTCCTTTTGTCCCTAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATAAAATATATCTGGTGTATGGTTGCTCCTTTTGTCCCTAAGAA  835

seq1  GCTAAGAACTGTGAGGAAGATAACGAAAAGGAAGAGTTACGAATATTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAACTGTGAGGAAGATAACGAAAAGGAAGAGTTACGAATATTTCA  885

seq1  TTTCAGGCTTATAGATTTCTGATTTCTTCACACACTTTTAAACAAGCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCTTATAGATTTCTGATTTCTTCACACACTTTTAAACAAGCAAA  935

seq1  TATTCTCAACTGTTACTGACCCTCAAATATAACCTGCAACGTATAACAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCAACTGTTACTGACCCTCAAATATAACCTGCAACGTATAACAGA  985

seq1  TCATATTTTTTTAATTTTTGCCAAAGGTTCAAACACTTTGGAAAATAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTTTTAATTTTTGCCAAAGGTTCAAACACTTTGGAAAATAAAA  1035

seq1  GGGATATAATAATTTCACATTACTAAATATTCCTGGTCTCAGTGCCATCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATAATAATTTCACATTACTAAATATTCCTGGTCTCAGTGCCATCA  1085

seq1  GAACTCTGTAGTGAAAGCAAATAAAAGTGATGTGAATTTTCTTTAGTTTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGTAGTGAAAGCAAATAAAAGTGATGTGAATTTTCTTTAGTTTC  1135

seq1  TAACTTTGGAAGGAATTC  1168
      ||||||||||||||||||
seq2  TAACTTTGGAAGGAATTC  1153

seq1: chr13_37828501_37828918
seq2: B6Ng01-063E01.g_125_575 (reverse)

seq1  GTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATT  50
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGA-T  49

seq1  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  100
      |||||||| ||||||||||| ||||||| |||||||||||||||||||||
seq2  TCTGAGTTTGAGGCCAGCCTAGTCTACAGAGTGAGTTCCAGGACAGCCAG  99

seq1  GGCTATACAGAGAAACC--------AAAAAAAAAAAAAAAAAAAAAAAAA  142
      ||||| |||||||||||        | |||  |||| || ||||| ||||
seq2  GGCTACACAGAGAAACCCTGTCTCAATAAACCAAAAGAAGAAAAATAAAA  149

seq1  AAAAATGGCTCACTGGGTAAAAGCACTGACTACTCTTCCAA-AGGTCCTG  191
       ||||| |     |  ||||||      | || | || ||| |  |||| 
seq2  TAAAATTG-----TAAGTAAAA-----TAGTAATATTACAACAAATCCT-  188

seq1  AATTCAAATCCCGA-AACCACATG-----GTGGCTCACAACC------AC  229
       |   || | | || || || |||      || |||| || |        
seq2  -AAGAAAGTTCAGAGAATCAAATGAGTATATGCCTCAAAAACTATATTCT  237

seq1  CCAAAATGAGA---TCT----GATGCACCCTTCT---GGTGCGTCTAAAG  269
       | || ||| |   |||     |||||    | |    ||| || |   |
seq2  ACTAAGTGAAAAATTCTAAACAATGCATATATATATATGTGTGTGT-GTG  286

seq1  ACAGCTACAATGTATTTATGTATAAATAAATCTTTAGGCTGGAGCAAGGG  319
         |      ||| | | ||| |   |   | | |  |   | |   | |
seq2  TGTGTGTGTGTGTGTGTGTGTGTTCGTGTGTGTGTGTGTGTGTGTGTGTG  336

seq1  AG---CAGAGTTCCTAAAAATTCAATTCCTAACAACCCCATGAAGGCGCA  366
       |     | ||   || |||||  ||   ||   |    ||  |    ||
seq2  TGTGTGTGTGTGTGTATAAATT--ATAGATATGTATGATATCCACTATCA  384

seq1  CAACCATCT----GTATAG--------CTACAGTGTGCT-TATAAAC--A  401
       ||  |  |    ||| ||         || |  || || ||  |||  |
seq2  AAATTAAATTGAGGTAAAGTAAATAATTTAAATAGTCCTATAGTAACCAA  434

seq1  TAAAATAAAAGAAATAA  418
      |||||||||||||||||
seq2  TAAAATAAAAGAAATAA  451