BAC Information

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BAC

Clone NameB6Ng01-065B19
Chromosome2 (Build37)14 (Build37)
Map Location 86,400,089 - 86,400,424103,099,637 - 103,100,732
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080
Downstream geneOlfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065B19.bB6Ng01-065B19.g
ACCDH884685DH884686
length1,0821,087
definitionDH884685|Mus musculus domesticus DNA, BAC clone: B6Ng01-065B19, 5' end.DH884686|Mus musculus domesticus DNA, BAC clone: B6Ng01-065B19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,400,089 - 86,400,424)(103,099,637 - 103,100,732)
sequence
gaattcatcaataatttccagtacttatcaaagaagctcagaagaaatac
ttgtgtttagctgctagtaaagtaaatgaccaggtatcattaacaccaat
tgggtgttaattattactaatgggttaattggtgaattcacctgaaacta
actatattttcaggaaatttctcatagataatagacatccatatggtctt
atcattatcattatgtaacgtagtgtttgggatattatattgttagtaca
ttgttattggttacgttgtggctcctgaatattcctatgttgtgcttctc
cattaaatcagaaggtgggtgtcttatatcatttttccattaccgtaata
aaatactctgacaaaatcaacttaaaggaggaaagacatattctggctta
cagttcaggaacacagttcatcttgaagcagttgtcatattgcatttgca
aacaagaagcagagagcaatgaatgccatgtgcttagctcaccttccctt
ttttatacagtcacagatccagttcagagaatgtaaggataacccctcac
aggtatgtctgggagtgtcttgtcttctaggcagttgagtgaagaccctg
aaagttaaaaattaacatgagccatcccagtaggggttcactttagagta
gtcctaaccaactttactagccttgtaagaagagacatatagacatacag
aggacagattatacaaagacacagcaagaaacgagccatataggagttaa
ggaatagattttttttttccattttttattaggtatttaactcatttaca
ttttcaatgctataccaaaagtcccccatatccacccacccccactcccc
tgcccacccactccccctttttgggcctggtgtcccctgtactggggcat
ataaagtttgcaagtccatggggcctctctttccatgatggcgactaggc
catctttgattaaaatgcagctagagtcaagagctcgggggactggttag
tcataatgttgttccacctataggtggcagatccctttagctcttgggta
ctttctcagctcctccatgggagcccatgatc
gaattcaacactgtcaggagcatatgtctgttatgcatcacgtgccaccc
cacccttttctttataaatggaaagctaatctttggagcaggaaattgtc
ggtatattgggcctgtgctttggttattgttattttcattatttgctggt
aatttagttcccagagcagtaaaatataggccaccatggaagccattctc
agcacagtacgtggttatggggtttcactgtgcagcctgcaatagctttg
cttcacaatgagacatacatttctactcaccatgctcgaattgatgctgg
gaggactgtactcagcacacgataaaactaaaatatataggctacaacat
ctattattgggcaaataaaacacaagggaagttgaatatgtgacagagat
catttaattggtgctccgcatcttgctgttttctgaaccaaattagtaag
acataatgagagtaacagagaccacttaagtgaaaccacttaaatcctaa
ggtgggtagaattactaaggagcttactggccaaactaatcatgtaatcg
ctgtatattgtttacagttgttagaaagttctgtttgcataaggtgcaaa
tgaacacctttcagcttcttggtgggagggcttcctctcctaaattatta
acaatgctgacatcctctataaaataatagagaaaaggttccccacttct
tccaagaccattataatagccaacatgtcaagcccaaagtgtcatatatc
acaagggaccttgagaaatggaaagagttgaggcaaatactcagatgtcc
attttgctcctacaaacatttggtgaggcccgactgagaacatagcactc
tactggaagtggatgtgacagctagctctggctccttgtggtttgctgtg
ctgaaacacaagagaagcaatgccatacgccaggcagttgttcatgcttt
tttcttccatgcattgcacagtgaataaagtattgcctgtaagccaggca
ggcatgagtaacagtctaggctcaatctaactatggctcatgtctctgaa
tggtggctaaatttccataacctgaggttttacaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_86400089_86400424
seq2: B6Ng01-065B19.b_804_1128 (reverse)

seq1  GATCATAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAA  50
      |||||| |||||||| ||||||||||| ||||||||| |||| |||||||
seq2  GATCAT-GGGCTCCC-ATGGAGGAGCT-GAGAAAGTACCCAA-GAGCTAA  46

seq1  AGGGATATGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACC  100
      |||||| ||| | ||||||||||||||||||||||| |||||||||| ||
seq2  AGGGATCTGCCA-CCTATAGGTGGAACAACATTATG-ACTAACCAGT-CC  93

seq1  CCGGAGCTCTTGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGG  150
      || |||||||||||||||||||||| |  ||| ||||||||||||||| |
seq2  CCCGAGCTCTTGACTCTAGCTGCATTTTAATC-AAAGATGGCCTAGTC-G  141

seq1  CCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCA  200
      |||||| |||||||||||||||  ||||||||||||||||||||||||||
seq2  CCATCA-TGGAAAGAGAGGCCCCATGGACTTGCAAACTTTATATGCCCCA  190

seq1  GTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGT  250
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  GTACAGGGG-ACACCAGGCCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGT  239

seq1  GGGGGTGGGTGCATATGGGGGACTTTTGGTATAGCATTGGAAATGTAAAT  300
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  GGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATTGAAAATGTAAAT  289

seq1  GAGTTAAATACCTAATAAAAAATGGAAAAAAAAAAT  336
      ||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAATACCTAATAAAAAATGGAAAAAAAAAAT  325

seq1: chr14_103099637_103100732
seq2: B6Ng01-065B19.g_68_1154

seq1  GAATTCAACACTGTCAGGAGCATATGTCTGTTATGCATCACGTGCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACTGTCAGGAGCATATGTCTGTTATGCATCACGTGCCACCC  50

seq1  CACCCTTTTCTTTATAAATGGAAAGCTAATCTTTGGAGCAGGAAATTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTTCTTTATAAATGGAAAGCTAATCTTTGGAGCAGGAAATTGTC  100

seq1  GGTATATTGGGCCTGTGCTTTGGTTATTGTTATTTTCATTATTTGCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTGGGCCTGTGCTTTGGTTATTGTTATTTTCATTATTTGCTGGT  150

seq1  AATTTAGTTCCCAGAGCAGTAAAATATAGGCCACCATGGAAGCCATTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTTCCCAGAGCAGTAAAATATAGGCCACCATGGAAGCCATTCTC  200

seq1  AGCACAGTACGTGGTTATGGGGTTTCACTGTGCAGCCTGCAATAGCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTACGTGGTTATGGGGTTTCACTGTGCAGCCTGCAATAGCTTTG  250

seq1  CTTCACAATGAGACATACATTTCTACTCACCATGCTCGAATTGATGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAATGAGACATACATTTCTACTCACCATGCTCGAATTGATGCTGG  300

seq1  GAGGACTGTACTCAGCACACGATAAAACTAAAATATATAGGCTACAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGTACTCAGCACACGATAAAACTAAAATATATAGGCTACAACAT  350

seq1  CTATTATTGGGCAAATAAAACACAAGGGAAGTTGAATATGTGACAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTGGGCAAATAAAACACAAGGGAAGTTGAATATGTGACAGAGAT  400

seq1  CATTTAATTGGTGCTCCGCATCTTGCTGTTTTCTGAACCAAATTAGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATTGGTGCTCCGCATCTTGCTGTTTTCTGAACCAAATTAGTAAG  450

seq1  ACATAATGAGAGTAACAGAGACCACTTAAGTGAAACCACTTAAATCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGAGAGTAACAGAGACCACTTAAGTGAAACCACTTAAATCCTAA  500

seq1  GGTGGGTAGAATTACTAAGGAGCTTACTGGCCAAACTAATCATGTAATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTAGAATTACTAAGGAGCTTACTGGCCAAACTAATCATGTAATCG  550

seq1  CTGTATATTGTTTACAGTTGTTAGAAAGTTCTGTTTGCATAAGGTGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATTGTTTACAGTTGTTAGAAAGTTCTGTTTGCATAAGGTGCAAA  600

seq1  TGAACACCTTTCAGCTTCTTGGTGGGAGGGCTTCCTCTCCTAAATTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACCTTTCAGCTTCTTGGTGGGAGGGCTTCCTCTCCTAAATTATTA  650

seq1  ACAATGCTGACATCCTCTAT-AAATAATAGAGAAAAGGTTCCCCACTTCT  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAATGCTGACATCCTCTATAAAATAATAGAGAAAAGGTTCCCCACTTCT  700

seq1  TCCAAGACCATTATAATAGCCAACATGTCAAGCCCAAAGTGTCATATATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACCATTATAATAGCCAACATGTCAAGCCCAAAGTGTCATATATC  750

seq1  ACAAGGGACCTTGAGAAATGGAAAGAGTTGAGGCAAATACTCAGATGTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGACCTTGAGAAATGGAAAGAGTTGAGGCAAATACTCAGATGTCC  800

seq1  ATTTTGCTCCTACAAACATTTGGTGAGGCCCGACTGAGAACATAGCACTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTCCTACAAACATTTGGTGAGGCCCGACTGAGAACATAGCACTC  850

seq1  TACTAGGAAGTGGATGTGACAGCTAGCTCTGGCTCCTTGTGGTTTGCCTG  899
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  TACT-GGAAGTGGATGTGACAGCTAGCTCTGGCTCCTTGTGGTTTG-CTG  898

seq1  TGGCTGACACACAGGAGAAGCAATGCCATACGCCAGGCAGTTGTTCATGC  949
      | ||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  T-GCTGAAACACAAGAGAAGCAATGCCATACGCCAGGCAGTTGTTCATGC  947

seq1  -TATTTCTTCCATGCATTGCACAGTGATTAAAGTATTGCCTGTAAAGGCA  998
       | |||||||||||||||||||||||| ||||||||||||||| ||| ||
seq2  TTTTTTCTTCCATGCATTGCACAGTGAATAAAGTATTGCCTGT-AAGCCA  996

seq1  GGCAGGCATGAGTAACAGTCTAGGCTCAAATCTTACTTATTGCTCATGTC  1048
      ||||||||||||||||||||||||||| ||||| || ||| |||||||| 
seq2  GGCAGGCATGAGTAACAGTCTAGGCTC-AATCTAAC-TATGGCTCATGT-  1043

seq1  CTCTGGACTGGTTGCTTAATTTCCCATAGCCTGAGGTTTTATACAAAT  1096
      |||| || |||| ||| ||||| ||||| ||||||||||  |||||||
seq2  CTCT-GAATGGTGGCTAAATTT-CCATAACCTGAGGTTT--TACAAAT  1087