BAC Information

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BAC

Clone NameB6Ng01-065O07
Chromosome2 (Build37)
Map Location 88,172,711 - 88,338,748
singlet/doubletdoublet
Overlap geneOlfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184
Upstream geneOlfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175
Downstream geneOlfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065O07.bB6Ng01-065O07.g
ACCDH885236DH885237
length467979
definitionDH885236|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O07, 5' end.DH885237|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,172,711 - 88,173,183)(88,337,759 - 88,338,748)
sequence
atttcaaaaatccttatgcttttactaatgaagacaggatgctactaata
actagatggactcttgtagacaagtttattttcataatggcagattatta
gtgacttgaatctccccatatgacttgatgttttaaaagtgattattggc
taaattaggatgaggactttgtttaattatcttgttttcagctcacatgt
acactccaagacccaggggtttcattcctttctgatcatgcagttatttg
taaaataaaaaaacatggcagttaaatttgtcctctgagtctgcttcccc
ttcagaaacactatgtatcctgaggtttctattcataatgggaggaaatc
aagtttcttagcttcattagaggctaatagtttgcaagaaatggagaagt
taaaaagagtcaaaattatatatatgattgtgtgtgtgtgtgtgtgtgtg
tgtatatatatatatat
gaattcactacctctttgtttctattttccctgtctcctttaactcctgg
ataaattatattttacaaaaatgtatttaatccaattttaatactacctc
ttttttcagtgtagcattttactttgaaaacttaagagtttggacaatga
attttggtatcatcaaagaaaggtgtattataatgatttcattacattta
ggtttatttcattgtaaatgtaacatattctagctatatgttttatattt
cattagagattttttaagtagaaaaatgttacttagaaaagatttatgtc
ctacatacacacacataattatctacttttaaaaattattttaggagaaa
cttatttactgcaatgttattttttatttggttttctctctttctttttt
tttttttggttgtgtattcaaatatttgtgtctcatgtgactgaaaaaaa
atcctcaatgtaatgttactgcctcatttttatgtataatttctatatta
ttattattattattaagacagggtttctctgtgtagcccttgctgtcctg
gaactcactctgtagaccaggttagcctcaagctcagaaatttgcctgcc
tctgcctaccaagtgctgggattaaactttgtgactgaaagaaatcctca
gtgtaatgttactgcctcattttgatgtagaagttctataaaattattag
tatgtttataactcatatcttcatttctttatgtgtgttttcatctctct
cacctttttgtgtattgtgtgagtatgtgtgtatatgcatgtgcatttgt
gacatcacagtaattctctccctccactagtgggtccagctaattgatct
cggcttgttaggcatggcagcaactctttacctggtggtcatttcatgga
tacatgcttttatactttacaggcataatatcatttatatttaatactat
aacataggtataaaggagttattctttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_88172711_88173183
seq2: B6Ng01-065O07.b_48_520

seq1  GAATTCATTTCAAAAATCCTTATGCTTTTACTAATGAAGACAGGATGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCAAAAATCCTTATGCTTTTACTAATGAAGACAGGATGCTA  50

seq1  CTAATAACTAGATGGACTCTTGTAGACAAGTTTATTTTCATAATGGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACTAGATGGACTCTTGTAGACAAGTTTATTTTCATAATGGCAGA  100

seq1  TTATTAGTGACTTGAATCTCCCCATATGACTTGATGTTTTAAAAGTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTGACTTGAATCTCCCCATATGACTTGATGTTTTAAAAGTGATT  150

seq1  ATTGGCTAAATTAGGATGAGGACTTTGTTTAATTATCTTGTTTTCAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTAAATTAGGATGAGGACTTTGTTTAATTATCTTGTTTTCAGCTC  200

seq1  ACATGTACACTCCAAGACCCAGGGGTTTCATTCCTTTCTGATCATGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACACTCCAAGACCCAGGGGTTTCATTCCTTTCTGATCATGCAGT  250

seq1  TATTTGTAAAATAAAAAAACATGGCAGTTAAATTTGTCCTCTGAGTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAAAATAAAAAAACATGGCAGTTAAATTTGTCCTCTGAGTCTGC  300

seq1  TTCCCCTTCAGAAACACTATGTATCCTGAGGTTTCTATTCATAATGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTCAGAAACACTATGTATCCTGAGGTTTCTATTCATAATGGGAG  350

seq1  GAAATCAAGTTTCTTAGCTTCATTAGAGGCTAATAGTTTGCAAGAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAGTTTCTTAGCTTCATTAGAGGCTAATAGTTTGCAAGAAATGG  400

seq1  AGAAGTTAAAAAGAGTCAAAATTATATATATGATTGTGTGTGTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTAAAAAGAGTCAAAATTATATATATGATTGTGTGTGTGTGTGTG  450

seq1  TGTGTGTGTATATATATATATAT  473
      |||||||||||||||||||||||
seq2  TGTGTGTGTATATATATATATAT  473

seq1: chr2_88337759_88338748
seq2: B6Ng01-065O07.g_67_1045 (reverse)

seq1  CCAAAGAATATACTACTTTTATTATACTATTGTTATAGTATTAAATATAA  50
      |||||||||| ||| ||    ||||||   ||||||||||||||||||||
seq2  CCAAAGAATA-ACTCCT----TTATACCTATGTTATAGTATTAAATATAA  45

seq1  ATTGATATTTATGACTGTAAAGTATAAAAGCATGTATCCATTGAAATGGA  100
      | ||||| ||||| |||||||||||||||||||||||||| |||||| ||
seq2  A-TGATA-TTATGCCTGTAAAGTATAAAAGCATGTATCCA-TGAAAT-GA  91

seq1  CCACCAGGTAAAGAGTTGCTGCCATGCCTAACAAGCCGAGATCAATTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGTAAAGAGTTGCTGCCATGCCTAACAAGCCGAGATCAATTAGC  141

seq1  TGGACCCACTAGGTGGAGGGAGAGAATTACTGTGATGTCACAAATGCACA  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCACTA-GTGGAGGGAGAGAATTACTGTGATGTCACAAATGCACA  190

seq1  TGCATATACACACATACTCACACAAATACACAAAAAGGTGAGAGAGATGA  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCATATACACACATACTCACAC-AATACACAAAAAGGTGAGAGAGATGA  239

seq1  AAACACACATAAAGAAATGAAGATATGAGTTATAAACATACTAATAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACATAAAGAAATGAAGATATGAGTTATAAACATACTAATAATTT  289

seq1  TATAGAACTTCTACATCAAAATGAGGCAGTAACATTACACTGAGGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAACTTCTACATCAAAATGAGGCAGTAACATTACACTGAGGATTTC  339

seq1  TTTCAGTCACAAAGTTTAATCCCAGCACTTGGTAGGCAGAGGCAGGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCACAAAGTTTAATCCCAGCACTTGGTAGGCAGAGGCAGGCAAA  389

seq1  TTTCTGAGCTTGAGGCTAACCTGGTCTACAGAGTGAGTTCCAGGACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCTTGAGGCTAACCTGGTCTACAGAGTGAGTTCCAGGACAGCA  439

seq1  AGGGCTACACAGAGAAACCCTGTCTTAATAATAATAATAATAATATAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAGAGAAACCCTGTCTTAATAATAATAATAATAATATAGAA  489

seq1  ATTATACATAAAAATGAGGCAGTAACATTACATTGAGGATTTTTTTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACATAAAAATGAGGCAGTAACATTACATTGAGGATTTTTTTTCAG  539

seq1  TCACATGAGACACAAATATTTGAATACACAACCAAAAAAAAAAAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAGACACAAATATTTGAATACACAACCAAAAAAAAAAAAAGAAA  589

seq1  GAGAGAAAACCAAATAAAAAATAACATTGCAGTAAATAAGTTTCTCCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAACCAAATAAAAAATAACATTGCAGTAAATAAGTTTCTCCTAA  639

seq1  AATAATTTTTAAAAGTAGATAATTATGTGTGTGTATGTAGGACATAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTAAAAGTAGATAATTATGTGTGTGTATGTAGGACATAAATC  689

seq1  TTTTCTAAGTAACATTTTTCTACTTAAAAAATCTCTAATGAAATATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGTAACATTTTTCTACTTAAAAAATCTCTAATGAAATATAAAA  739

seq1  CATATAGCTAGAATATGTTACATTTACAATGAAATAAACCTAAATGTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGCTAGAATATGTTACATTTACAATGAAATAAACCTAAATGTAAT  789

seq1  GAAATCATTATAATACACCTTTCTTTGATGATACCAAAATTCATTGTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATTATAATACACCTTTCTTTGATGATACCAAAATTCATTGTCCA  839

seq1  AACTCTTAAGTTTTCAAAGTAAAATGCTACACTGAAAAAAGAGGTAGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTAAGTTTTCAAAGTAAAATGCTACACTGAAAAAAGAGGTAGTAT  889

seq1  TAAAATTGGATTAAATACATTTTTGTAAAATATAATTTATCCAGGAGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGGATTAAATACATTTTTGTAAAATATAATTTATCCAGGAGTTA  939

seq1  AAGGAGACAGGGAAAATAGAAACAAAGAGGTAGTGAATTC  990
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACAGGGAAAATAGAAACAAAGAGGTAGTGAATTC  979