BAC Information

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BAC

Clone NameB6Ng01-066J23
Chromosome2 (Build37)
Map Location 35,723,521 - 35,778,020
singlet/doubletdoublet
Overlap geneTtll11
Upstream genePsmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
Downstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066J23.bB6Ng01-066J23.g
ACCDH885751DH885752
length1,1871,112
definitionDH885751|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J23, 5' end.DH885752|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,723,521 - 35,724,263)(35,776,896 - 35,778,020)
sequence
gaattcaaggcccatacctaaacatgataaaagctatctacagcaaagca
gtagccaacatcaaagtaaatggtgagaagttggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctacctattcaacattg
tacttgaagtcctagccagagcaattcgacaacaaaaggaaatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatag
tatatataactgaccctaaaaattccaccagagaactcctaaacctgata
aacagcttcaatgaagtagctggatataaaattaactcaaacaagtcaat
ggcctttctctatacaaaggataaacaggctaagaaagaaattagggaaa
caacacccttatccatagtcacaaataatataaaataccttgacatgact
ctaactaaggaagtgaaagctctgtatgttaagaacttcaagtctctgaa
gaaaaaaattaaagatctcagaagatggaaagatctcccatgctcatgga
ttggtaggatcaacattgtaaaaatggctatcttgccaaaagcaatctac
agattcaatgcaatccccatcaaaattccaactcaattcttcaacgaatt
agaaagagcaatctgcaaattaatctagaataacaaaaaacctaggatag
taaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcct
gacctaaagctgtactacagagcaattgtgataaaaactgcatggtactg
gtatagcgacagacaagtagaccaatggaatagaattgaagacccagaat
gaacccactcacctatggtcacttgatctttgacaagggagctaaaacca
tccagtggaaaaaagacagcattttcaacaatggtgctggcacaactggc
ggttatcatgtagaagccagttcttaagtgtaaatgagtcccaaagccag
gcctaccagagtttggtagcctgttcttcccacttggctacagaagatgg
ctgtgcgcttcatctttacaagcagctatgaatatccagacccttctaag
ctgtgttagacacagtgaggtattaaccgtgggggaaatgcaaaccaacg
gagatgtgaaggttttgttttgtatttggaagccagt
gaattcagtgcatacatctgacttcctccacatctggctgcaaatctcga
gcctctcagttcttcccccagttccttcctctgcctggatgtcccgcctt
tcctatcccgcctcagctataggccgtcagctctttattaaactgatcag
aggtaacagagaagaatgtttacaaaatacgatgcaggtgctgagtaaac
agaataacaatctccaagtccaggcagagctcagctctctgctggtgcag
aaatcaacatttgaatagtacaaagacaacctttgcacaatgtacaaggg
attagaccaacaaacaaatattagagaattaaattcatgagattatgtca
agttatgtatggtttaaaattattttagtcaggtagccatctctagatga
caaagacagcagatcacatgcactgagtaagattttagcaatctaaagtc
acagaatggaagcctgtgctatcttgaaataagatgcagttgtttgattt
ctcgagacagggtttgtttctgtgtgtagctctggctgtcctggaactca
ctctgtaaaccaggctgatctcagagatccaccttcctctgcctcctaag
ggctcagattaaaggtgtgtgccaccatgacctgacataaaagatgtagt
tttgatactacagtttgctaggaatcaggcaccagaatagctgtatatgt
gtatgttcacacacatataaatggacacatatatacatacaacattgttc
ttataggtaagtatacagaaaatgtatactacatatgtatacctacataa
atgtatatatagtatctatgtaagtatttctgtacatagattatatgtgt
agagatataaacctataatttggtattcagaaaataaagaacaataagtt
gtgtatttttaatagatatcttcatttgattttattaatcttacagcaaa
agattaattatagacttggtgcagagtctggtggtagagcacttaactag
cttatgccagccttgagttgatcccagtactgagaagcacatgaataaag
gtgaaacaaaaatttcagttttttgctgtactaatatttacattttatca
ctgaataaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35723521_35724263
seq2: B6Ng01-066J23.b_518_1237

seq1  AGCTCTGTATGTTAAGAACTTCAAGTCTCTGAAGAAAAAAATTAAAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTATGTTAAGAACTTCAAGTCTCTGAAGAAAAAAATTAAAGATC  50

seq1  TCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGTAGGATCAACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGTAGGATCAACATT  100

seq1  GTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCC  150

seq1  CATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGAGCAATCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGAGCAATCTGCA  200

seq1  AATTAATCTAGAATAACAAAAAACCTAGGATAGTAAAAACTCTTCTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCTAGAATAACAAAAAACCTAGGATAGTAAAAACTCTTCTCAAG  250

seq1  GATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTA  300

seq1  CAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGCGACAGACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGCGACAGACAAG  350

seq1  TAGACCAATGGAATAGAATTGAAGACCCAGAATGAACCCACTCACCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAATGGAATAGAATTGAAGACCCAGAATGAACCCACTCACCTATG  400

seq1  GTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  450

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCATGTAGAAG  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCAAC-AATGGTGCTGGCACAACTGGCGGTTATCATGTAGAAG  499

seq1  CCAGTTCTTAAGTGTTAAATGAGTCCCAAAGCCAGGCCTACCAGAGTTTG  550
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTAAGTG-TAAATGAGTCCCAAAGCCAGGCCTACCAGAGTTTG  548

seq1  GTAGCCTGTTCTTCCCACTTGGCTACAG-AGATGGCTGTGCGCTTCCATT  599
      |||||||||||||||||||||||||||| |||||||||||||||| ||| 
seq2  GTAGCCTGTTCTTCCCACTTGGCTACAGAAGATGGCTGTGCGCTT-CAT-  596

seq1  CCTTTACAAGCAGCCTATGAATATTCAAGACCCTTTCTAAGCTTGTTGTT  649
       |||||||||||| ||||||||| || |||||| |||||||||   ||||
seq2  -CTTTACAAGCAG-CTATGAATA-TCCAGACCC-TTCTAAGCT--GTGTT  640

seq1  AAGAACCACAGTGGAAGAGTATTTACACCGTGGGGGAAATGCAAACACAA  699
       |||  |||||||  || |||||   |||||||||||||||||||| |||
seq2  -AGA--CACAGTG--AG-GTATT--AACCGTGGGGGAAATGCAAAC-CAA  681

seq1  CCGGAGGAGTGTGGAGTGTTTTGTTTTGTATTTTGAAAGCCAGT  743
       |||||   |||| || ||||||||||||| |||| ||||||||
seq2  -CGGAG--ATGTGAAG-GTTTTGTTTTGTA-TTTGGAAGCCAGT  720

seq1: chr2_35776896_35778020
seq2: B6Ng01-066J23.g_67_1178 (reverse)

seq1  TAATTT-TTCAGTTGATAAAATGTAAATATTAGTAACAGGCAAAAAAACC  49
      |||||| ||||| ||||||||||||||||||||| ||| ||||||||  |
seq2  TAATTTATTCAG-TGATAAAATGTAAATATTAGT-ACA-GCAAAAAA--C  45

seq1  TGAAATTTTTTGTTTCACCTTTTTATTCATGTGCTTTCTTCAGTACTGGG  99
      ||||| |||||||||||||  |||||||||||||||   |||||||| ||
seq2  TGAAA-TTTTTGTTTCACC--TTTATTCATGTGCTT--CTCAGTACT-GG  89

seq1  GATCAACTCAGGGCCTGGCATAGGCTAGTTAAGTGCTCTACCACCAGACT  149
      |||||||||| || |||||||| |||||||||||||||||||||||||||
seq2  GATCAACTCAAGG-CTGGCATAAGCTAGTTAAGTGCTCTACCACCAGACT  138

seq1  CTGCACCAAGTCTTATAATTAATCTTTTGCTGTAAGATTTAATAAAATCA  199
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  CTGCACCAAGTC-TATAATTAATCTTTTGCTGTAAGA-TTAATAAAATCA  186

seq1  AATGAAGATATCTATTAAAAATACACAACTTATTGTTCTTTATTTTCTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATATCTATTAAAAATACACAACTTATTGTTCTTTATTTTCTGA  236

seq1  ATACCAAATTATAGGTTTATATCTCTACACATATAATCTATGTACAGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAATTATAGGTTTATATCTCTACACATATAATCTATGTACAGAAA  286

seq1  TACTTACATAGATACTATATATACATTTATGTAGGTATACATATGTAGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACATAGATACTATATATACATTTATGTAGGTATACATATGTAGTA  336

seq1  TACATTTTCTGTATACTTACCTATAAGAACAATGTTGTATGTATATATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTCTGTATACTTACCTATAAGAACAATGTTGTATGTATATATGT  386

seq1  GTCCATTTATATGTGTGTGAACATACACATATACAGCTATTCTGGTGCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTATATGTGTGTGAACATACACATATACAGCTATTCTGGTGCCT  436

seq1  GATTCCTAGCAAACTGTAGTATCAAAACTACATCTTTTATGTCAGGTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTAGCAAACTGTAGTATCAAAACTACATCTTTTATGTCAGGTCAT  486

seq1  GGTGGCACACACCTTTAATCTGAGCCCTTAGGAGGCAGAGGAAGGTGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACACACCTTTAATCTGAGCCCTTAGGAGGCAGAGGAAGGTGGAT  536

seq1  CTCTGAGATCAGCCTGGTTTACAGAGTGAGTTCCAGGACAGCCAGAGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGATCAGCCTGGTTTACAGAGTGAGTTCCAGGACAGCCAGAGCTA  586

seq1  CACACAGAAACAAACCCTGTCTCGAGAAATCAAACAACTGCATCTTATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAAACAAACCCTGTCTCGAGAAATCAAACAACTGCATCTTATTT  636

seq1  CAAGATAGCACAGGCTTCCATTCTGTGACTTTAGATTGCTAAAATCTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGCACAGGCTTCCATTCTGTGACTTTAGATTGCTAAAATCTTAC  686

seq1  TCAGTGCATGTGATCTGCTGTCTTTGTCATCTAGAGATGGCTACCTGACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCATGTGATCTGCTGTCTTTGTCATCTAGAGATGGCTACCTGACT  736

seq1  AAAATAATTTTAAACCATACATAACTTGACATAATCTCATGAATTTAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTTAAACCATACATAACTTGACATAATCTCATGAATTTAATT  786

seq1  CTCTAATATTTGTTTGTTGGTCTAATCCCTTGTACATTGTGCAAAGGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATATTTGTTTGTTGGTCTAATCCCTTGTACATTGTGCAAAGGTTG  836

seq1  TCTTTGTACTATTCAAATGTTGATTTCTGCACCAGCAGAGAGCTGAGCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTACTATTCAAATGTTGATTTCTGCACCAGCAGAGAGCTGAGCTC  886

seq1  TGCCTGGACTTGGAGATTGTTATTCTGTTTACTCAGCACCTGCATCGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGACTTGGAGATTGTTATTCTGTTTACTCAGCACCTGCATCGTAT  936

seq1  TTTGTAAACATTCTTCTCTGTTACCTCTGATCAGTTTAATAAAGAGCTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAACATTCTTCTCTGTTACCTCTGATCAGTTTAATAAAGAGCTGA  986

seq1  CGGCCTATAGCTGAGGCGGGATAGGAAAGGCGGGACATCCAGGCAGAGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTATAGCTGAGGCGGGATAGGAAAGGCGGGACATCCAGGCAGAGGA  1036

seq1  AGGAACTGGGGGAAGAACTGAGAGGCTCGAGATTTGCAGCCAGATGTGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGGGGGAAGAACTGAGAGGCTCGAGATTTGCAGCCAGATGTGGA  1086

seq1  GGAAGTCAGATGTATGCACTGAATTC  1125
      ||||||||||||||||||||||||||
seq2  GGAAGTCAGATGTATGCACTGAATTC  1112