BAC Information

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BAC

Clone NameB6Ng01-067G13
Chromosome2 (Build37)
Map Location 172,742,141 - 172,918,202
singlet/doubletdoublet
Overlap geneBmp7, LOC100043751, Spo11, Rae1, Rbm38
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
Downstream geneCtcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067G13.bB6Ng01-067G13.g
ACCDH886308DH886309
length1,164908
definitionDH886308|Mus musculus domesticus DNA, BAC clone: B6Ng01-067G13, 5' end.DH886309|Mus musculus domesticus DNA, BAC clone: B6Ng01-067G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,742,141 - 172,743,317)(172,917,621 - 172,918,202)
sequence
gaattctttgtcatgttccactggaggggaagaaaacacaccagcaccaa
aacaatttagtgtccggttcctttctgtccatgccattgactcgaagtgg
gtggccactgcctacggcagcctccgtgacaagcttccatcccatgtagg
cacacggtggattttatggtcacaggctcagaccccaaagccatcctcaa
caaaaagagcatggctctgtatccaccctgctgggtgagaccaagcacag
ccatagaacagccacactagactggagtcctagcagctcaggactgggtt
caaacccagcctcggccactaaagtagctgtgtcagaagaaagattcaag
acatcccatctgaaactcagttccaccaaatggaaaatgagaccacattt
acataagcgactgataatgttatggcgaggtaactgtcaccggtgaacac
aggccttgctagacctgtcctgggacagtgtctgacagtgcggtcctcag
ccctggctgcatagaaaaatgactaaatatgcttttagaaattaaaggtg
tctggtcacggcgggctggtgatattaccggctctcagaagggcttgcca
attcctgtggtgtaaacgataccattgagagagagttcaatggccaacac
ggaggcatcgacctcacaggtgggaagagaaatacgccatgagcagccac
agcacacagctcatacccggccccgaaccaaaagggatcaagagctgctc
agagagaagtccccagaaacccctcatgtgtcttctgatgtcagctctcc
tcctgcccactcttcatcccacaaggagcacaccccttctacatcagcac
acgggaaagaccagcttgcacatgtcagagaggagtctgggatgccacca
ggccctcgggtttcctgacagaacagagaaagaaaagttccctttgcagc
agctgctgagcaaggcagtctctgcacgtggggagctagcggggtgaccc
caggataggaggcagcagaagcttaggatagtccctgtcatctgctactt
cctcccatctgctagctcatttctggttgcttggaagacactgacacaag
caacttatttggcttacaatttcaggttacagtcattcatagcaggagtc
gagtcaagagctgg
gaattcagtcctcaccccctgagtgaccgtggttacacctgcaccagaaa
cccagataattatggtctttaaaatgtcctggggggctggagagatggct
cagcagttaagagtacataccactcttgaagaggacctgagttgggctcc
cagcacacatgttgggcagctcacgaccaactctaactccaggagatctg
acattattattgttttttaaggcaggatttctctgggcagtcctcgctgt
cctagaactcactgtgtacaccaggctggcctctaactcaggagatccac
ctgcctctgcttcccgagtgctgaggttaaaggcatgtgctatcatgacc
aactagtttaaaaaacagaaacaaaaaaaaaaataacaagacaaaacaaa
acctttgtttttaatgccttgttgggccagtaagatggctcagtgagtaa
aagcatttgctggctagcctgatgacctgagttcgattcccatgacccac
atcggggaaaaaaagaatgaacttctgctaagttgccctttacttgtaca
tagtggtgtcatacacacacacacactcatacacacacacagacacacac
tcatacacacacagagacacacattcatacacacacacagacacacacac
tcatacatacacagacacacattcatacacacagacacacacactcatac
acacacacagacacacattcatacacacacacagacacacacactcatac
acacacacagacacattcatgcacacactcatacacacagacacacacac
tcatacacacacagacacacattcatacacaacacagacacacattcata
cacacacacactcatacacacacagacacacattcatatacaccacacac
atacattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172742141_172743317
seq2: B6Ng01-067G13.b_47_1210

seq1  GAATTCTTTGTCATGTTCCACTGGAGGGGAAGAAAACACACCAGCACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCATGTTCCACTGGAGGGGAAGAAAACACACCAGCACCAA  50

seq1  AACAATTTAGTGTCCGGTTCCTTTCTGTCCATGCCATTGACTCGAAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTAGTGTCCGGTTCCTTTCTGTCCATGCCATTGACTCGAAGTGG  100

seq1  GTGGCCACTGCCTACGGCAGCCTCCGTGACAAGCTTCCATCCCATGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACTGCCTACGGCAGCCTCCGTGACAAGCTTCCATCCCATGTAGG  150

seq1  CACACGGTGGATTTTATGGTCACAGGCTCAGACCCCAAAGCCATCCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGTGGATTTTATGGTCACAGGCTCAGACCCCAAAGCCATCCTCAA  200

seq1  CAAAAAGAGCATGGCTCTGTATCCACCCTGCTGGGTGAGACCAAGCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAGCATGGCTCTGTATCCACCCTGCTGGGTGAGACCAAGCACAG  250

seq1  CCATAGAACAGCCACACTAGACTGGAGTCCTAGCAGCTCAGGACTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAACAGCCACACTAGACTGGAGTCCTAGCAGCTCAGGACTGGGTT  300

seq1  CAAACCCAGCCTCGGCCACTAAAGTAGCTGTGTCAGAAGAAAGATTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCAGCCTCGGCCACTAAAGTAGCTGTGTCAGAAGAAAGATTCAAG  350

seq1  ACATCCCATCTGAAACTCAGTTCCACCAAATGGAAAATGAGACCACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCATCTGAAACTCAGTTCCACCAAATGGAAAATGAGACCACATTT  400

seq1  ACATAAGCGACTGATAATGTTATGGCGAGGTAACTGTCACCGGTGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGCGACTGATAATGTTATGGCGAGGTAACTGTCACCGGTGAACAC  450

seq1  AGGCCTTGCTAGACCTGTCCTGGGACAGTGTCTGACAGTGCGGTCCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGCTAGACCTGTCCTGGGACAGTGTCTGACAGTGCGGTCCTCAG  500

seq1  CCCTGGCTGCATAGAAAAATGACTAAATATGCTTTTAGAAATTAAAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGCATAGAAAAATGACTAAATATGCTTTTAGAAATTAAAGGTG  550

seq1  TCTGGTCACGGCGGGCTGGTGATATTACCGGCTCTCAGAAGGGCTTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCACGGCGGGCTGGTGATATTACCGGCTCTCAGAAGGGCTTGCCA  600

seq1  ATTCCTGTGGTGTAAACGATACCATTGAGAGAGAGTTCAATGGCCAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTGGTGTAAACGATACCATTGAGAGAGAGTTCAATGGCCAACAC  650

seq1  GGAGGCATCGACCTCACAGGTGGGAAGAGAAATACGCCATGAGCAGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATCGACCTCACAGGTGGGAAGAGAAATACGCCATGAGCAGCCAC  700

seq1  AGCACACAGCTCATACCCGGCCCCGAACCAAAAGGGATCAAGAGCTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAGCTCATACCCGGCCCCGAACCAAAAGGGATCAAGAGCTGCTC  750

seq1  AGAGAGAAGTCCCCAGAAACCCCTCATGTGTCTTCTGATGTCAGCTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGTCCCCAGAAACCCCTCATGTGTCTTCTGATGTCAGCTCTCC  800

seq1  TCCTGCCCACTCTTCATCCCACAAGGAGCACACCCCTTCTACATCAGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCACTCTTCATCCCACAAGGAGCACACCCCTTCTACATCAGCAC  850

seq1  ACGGGAAAGACCAGCTTGCACATGTCAGAGAGGAGTCTGGGATGCCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAAAGACCAGCTTGCACATGTCAGAGAGGAGTCTGGGATGCCACCA  900

seq1  GGCCCTCGGGTTTCCTGACAGAACAGAGAAGGAAAAGTTCCCTTTGCAGC  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGCCCTCGGGTTTCCTGACAGAACAGAGAAAGAAAAGTTCCCTTTGCAGC  950

seq1  AGCTGCTGAGCAAGGCAGTCTCCTGCACGTGGGGAGCTAGCGGGGTGACC  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCTGCTGAGCAAGGCAGTCT-CTGCACGTGGGGAGCTAGCGGGGTGACC  999

seq1  CCAGGATAAGGAGGCAAGGCAGGAAGCTTAGGATAGTCCCTGTCATCTGC  1050
      ||||||| ||||||||  ||| ||||||||||||||||||||||||||||
seq2  CCAGGAT-AGGAGGCA--GCA-GAAGCTTAGGATAGTCCCTGTCATCTGC  1045

seq1  TACTTCCTCCCATCCTGCCTAGCTTCATTTCT-GTTGCTGAGAAGACAAC  1099
      ||||||||||||| ||| ||||| |||||||| ||||||  |||||||  
seq2  TACTTCCTCCCAT-CTG-CTAGC-TCATTTCTGGTTGCTTGGAAGACA--  1090

seq1  CTGACACAAAGCAACTTATTTGGCTTACAATTCCAGGTTACAGTCGATCA  1149
      ||||||| |||||||||||||||||||||||| ||||||||||||  |||
seq2  CTGACAC-AAGCAACTTATTTGGCTTACAATTTCAGGTTACAGTCATTCA  1139

seq1  TAGCAGGGAAGTCAGAGTCAAGAGCTGG  1177
      |||||||  |||| ||||||||||||||
seq2  TAGCAGG--AGTC-GAGTCAAGAGCTGG  1164

seq1: chr2_172917621_172918202
seq2: B6Ng01-067G13.g_70_651 (reverse)

seq1  GTATGAGTGTGTGTGTGTGTATGACACCACTATGTACAAGTAAAGGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTGTGTGTGTGTGTATGACACCACTATGTACAAGTAAAGGGCAA  50

seq1  CTTAGCAGAAGTTCATTCTTTTTTTCCCCGATGTGGGTCATGGGAATCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGAAGTTCATTCTTTTTTTCCCCGATGTGGGTCATGGGAATCGA  100

seq1  ACTCAGGTCATCAGGCTAGCCAGCAAATGCTTTTACTCACTGAGCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTCATCAGGCTAGCCAGCAAATGCTTTTACTCACTGAGCCATCT  150

seq1  TACTGGCCCAACAAGGCATTAAAAACAAAGGTTTTGTTTTGTCTTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCCCAACAAGGCATTAAAAACAAAGGTTTTGTTTTGTCTTGTTAT  200

seq1  TTTTTTTTTTGTTTCTGTTTTTTAAACTAGTTGGTCATGATAGCACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGTTTCTGTTTTTTAAACTAGTTGGTCATGATAGCACATGC  250

seq1  CTTTAACCTCAGCACTCGGGAAGCAGAGGCAGGTGGATCTCCTGAGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACCTCAGCACTCGGGAAGCAGAGGCAGGTGGATCTCCTGAGTTAG  300

seq1  AGGCCAGCCTGGTGTACACAGTGAGTTCTAGGACAGCGAGGACTGCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTGTACACAGTGAGTTCTAGGACAGCGAGGACTGCCCAG  350

seq1  AGAAATCCTGCCTTAAAAAACAATAATAATGTCAGATCTCCTGGAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCTGCCTTAAAAAACAATAATAATGTCAGATCTCCTGGAGTTAG  400

seq1  AGTTGGTCGTGAGCTGCCCAACATGTGTGCTGGGAGCCCAACTCAGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTCGTGAGCTGCCCAACATGTGTGCTGGGAGCCCAACTCAGGTCC  450

seq1  TCTTCAAGAGTGGTATGTACTCTTAACTGCTGAGCCATCTCTCCAGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGAGTGGTATGTACTCTTAACTGCTGAGCCATCTCTCCAGCCCC  500

seq1  CCAGGACATTTTAAAGACCATAATTATCTGGGTTTCTGGTGCAGGTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACATTTTAAAGACCATAATTATCTGGGTTTCTGGTGCAGGTGTAA  550

seq1  CCACGGTCACTCAGGGGGTGAGGACTGAATTC  582
      ||||||||||||||||||||||||||||||||
seq2  CCACGGTCACTCAGGGGGTGAGGACTGAATTC  582