BAC Information

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BAC

Clone NameB6Ng01-069D24
Chromosome2 (Build37)
Map Location 37,279,405 - 37,405,641
singlet/doubletdoublet
Overlap geneZbtb6, Zbtb26, Rabgap1, Gpr21
Upstream geneOlfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2
Downstream gene6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069D24.bB6Ng01-069D24.g
ACCDH887616DH887617
length837998
definitionDH887616|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D24, 5' end.DH887617|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,279,405 - 37,280,243)(37,404,645 - 37,405,641)
sequence
gaattcaaatcccagcaaccacaccgtggctcacatctgatgccctcttc
tggagtgtctgaagacagctacagtgtacttacatataataaataaataa
atctttaaaaaaaaatgcagatgtgatggtgcatccctgtgaacccagca
attgaaaggtccaggcagaatcatagactgaactgcttacaactgcagct
ccagtgacacaaagcttctggcaagtgtgacaagatcggctttttagttt
ttgcattttgtttttttttgtgaaagatccattggccccacctgtttgtt
gtttgttttgttttctggtgccttggctagcctgtaactagctctgtaga
ccaggctggcctcaaacgcagagatctgactgcttcccaagtgctgggat
taaaggcatgtaccaccacctggcagccccaccagctatacattaataac
tcattattcataatttcatccaattatgttaatcaaaaaagaaagtttcc
caacaatcaggtgtacattttggtattttctttttgtttttgtttcaaga
cagggtttcttgtgtagccctggctttcctggaactcactctgcctctgg
agtgctgggctcaaaggtgtgcaccatcaccacctggcacatttctgttc
ttttcaactggacagtgatgagtaattttatatatacatgttccctaacc
tactgtgtgtgcattttccattctacttccatttgatatttttccatttt
cacacaggaaacattccccaacatggaaaaccacattaaaagttaacaat
cacaccttccttccctaatatggttttagacagggct
gaattctggggcccggactcaggctgtcaggtttggcggcaagcaccttt
acctgctgagttatctcaatgtccctaagcttggtattttggtgtaagtt
ccaatgtagtcctaaacacctctctcctttagtcattaatctgtcacaag
aactgaataatgcactcttaaatataaatacatgctatctgccctagtga
agctggttcttggtattaaggcctatgcagatggagagagaatgagggta
gctgctgacctggtctctaggtgcaccctgcttacttagctcagtgaata
atattccatagctccagtcttggcttggctgataacttacttatctgtga
aatactaatagtgcttctgtgtgttaagaggataccctgacagaaaacta
tcatatacagtgctcagaaggctctgtagcacatagggagttcttttcaa
taaactgtaattattccttgctgttgcagtcattatttggcaacctatct
gaaagggtttgtatatgcttggcccaggaagtggcactgttggcaggtgt
ggccttgtgggtgtgtgcttcaatacccttgtcctagttgcctgggagcc
aatcttccactagcagacttcagataaagatgtagaactctcagctctgc
ctgcagcatgcctgcctagatggtaatgactagatgataatggactgaac
ctctgaacctgtaagccagccccaaatttaaatgttgtccttttataaga
cttgccttggtcgtggtgtctgttcatagcaatagaagtaaatcctaact
aagacactatctgaattaggaaacagagcagggagcagttctctgaaaag
gcactgcatacatcaaactatataaataaagtcccatttacacagaaata
tatgagttagctgggcttctggaaaaggagcaggtttccagatgccttca
atgttttacagaaataaaaggtatgctgctttatggggagggtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37279405_37280243
seq2: B6Ng01-069D24.b_46_882

seq1  GAATTCAAATCCCAGCAACCACACCGTGGCTCACATCTGATGCCCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCCAGCAACCACACCGTGGCTCACATCTGATGCCCTCTTC  50

seq1  TGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAA  100

seq1  ATCTTTAAAAAAAAATGCAGATGTGATGGTGCATCCCTGTGAACCCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAAAAAAAATGCAGATGTGATGGTGCATCCCTGTGAACCCAGCA  150

seq1  ATTGAAAGGTCCAGGCAGAATCATAGACTGAACTGCTTACAACTGCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGGTCCAGGCAGAATCATAGACTGAACTGCTTACAACTGCAGCT  200

seq1  CCAGTGACACAAAGCTTCTGGCAAGTGTGACAAGATCGGCTTTTTAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACACAAAGCTTCTGGCAAGTGTGACAAGATCGGCTTTTTAGTTT  250

seq1  TTGCATTTTGTTTTTTTTTGTGAAAGATCCATTGGCCCCACCTGTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTTGTTTTTTTTTGTGAAAGATCCATTGGCCCCACCTGTTTGTT  300

seq1  GTTTGTTTTGTTTTCTGGTGCCTTGGCTAGCCTGTAACTAGCTCTGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTGTTTTCTGGTGCCTTGGCTAGCCTGTAACTAGCTCTGTAGA  350

seq1  CCAGGCTGGCCTCAAACGCAGAGATCTGACTGCTTCCCAAGTGCTGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCAAACGCAGAGATCTGACTGCTTCCCAAGTGCTGGGAT  400

seq1  TAAAGGCATGTACCACCACCTGGCAGCCCCACCAGCTATACATTAATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCATGTACCACCACCTGGCAGCCCCACCAGCTATACATTAATAAC  450

seq1  TCATTATTCATAATTTCATCCAATTATGTTAATCAAAAAAGAAAGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCATAATTTCATCCAATTATGTTAATCAAAAAAGAAAGTTTCC  500

seq1  CAACAATCAGGTGTACATTTTGGTATTTTCTTTTTGTTTTTGTTTCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATCAGGTGTACATTTTGGTATTTTCTTTTTGTTTTTGTTTCAAGA  550

seq1  CAGGGTTTCTTGTGTAGCCCTGGCTTTCCTGGAACTCACTCTGCCTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTTGTGTAGCCCTGGCTTTCCTGGAACTCACTCTGCCTCTGG  600

seq1  AGTGCTGGGCTCAAAGGTGTGCACCATCACCACCTGGCACATTTCTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGCTCAAAGGTGTGCACCATCACCACCTGGCACATTTCTGTTC  650

seq1  TTTTCAACTGGACAGTGATGAGTAATTTTATATATACATGTTCCCTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACTGGACAGTGATGAGTAATTTTATATATACATGTTCCCTAACC  700

seq1  TACTGTGTGTGCATTTTCCATTCTACTTCCATTTGATATTTTTCCA-TTT  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TACTGTGTGTGCATTTTCCATTCTACTTCCATTTGATATTTTTCCATTTT  750

seq1  CACACAGGAAACATTCCCCAAACATGGAAAACCACATTAAAAGTTAACAA  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACACAGGAAACATTCCCC-AACATGGAAAACCACATTAAAAGTTAACAA  799

seq1  TCACACCTTCCTTTCCCTATTATGTTTTTTAGACAGGGCT  839
      ||||||||||| ||||||| ||||  ||||||||||||||
seq2  TCACACCTTCC-TTCCCTAATATG-GTTTTAGACAGGGCT  837

seq1: chr2_37404645_37405641
seq2: B6Ng01-069D24.g_66_1063 (reverse)

seq1  CACCCACCCTCCCCATACAGCAGCATACCTTTTATCTCTGTAAAACATTG  50
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  CACCCACCCTCCCCATAAAGCAGCATACCTTTTATTTCTGTAAAACATTG  50

seq1  AAGGCATTCTGGAAACCTGCTCCTTTTCCAGAGGCCAGGCTAACTCATAT  100
      |||||| ||||||||||||||||||||||||| |||  ||||||||||||
seq2  AAGGCA-TCTGGAAACCTGCTCCTTTTCCAGAAGCCCAGCTAACTCATAT  99

seq1  ATTTCTGTGTAAAT-GGACTTTATTTATATAGTTTGATGTATGCAGTGCC  149
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTGTAAATGGGACTTTATTTATATAGTTTGATGTATGCAGTGCC  149

seq1  TTTTCAGAGGACTGCTCCCTGCTCTGTTTCCTAATTCAGATAGTGTCTTA  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGAACTGCTCCCTGCTCTGTTTCCTAATTCAGATAGTGTCTTA  199

seq1  GTTAGGATTTTACTTCTATTGCTATGAACAGACACCACGACCAAGGCAAG  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGA-TTTACTTCTATTGCTATGAACAGACACCACGACCAAGGCAAG  248

seq1  TCTTAT-AAAGGACAACATTT-AATTTGGGGCTGGCTTACAGGTTCAGAG  297
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTTATAAAAGGACAACATTTAAATTTGGGGCTGGCTTACAGGTTCAGAG  298

seq1  GTTCAGTCCATTATCATCTAGTCATTACCATCTAGGCAGGCATGCTGCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTCCATTATCATCTAGTCATTACCATCTAGGCAGGCATGCTGCAG  348

seq1  GCAGAGCTGAGAGTTCTACATCTTTATCTGAAGTCTGCTAGTGGAAGATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTGAGAGTTCTACATCTTTATCTGAAGTCTGCTAGTGGAAGATT  398

seq1  GGCTCCCAGGCAACTAGGACAAGGGTATTGAAGCACACACCCACAAGGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCAGGCAACTAGGACAAGGGTATTGAAGCACACACCCACAAGGCC  448

seq1  ACACCTGCCAACAGTGCCACTTCCTGGGCCAAGCATATACAAACCCTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGCCAACAGTGCCACTTCCTGGGCCAAGCATATACAAACCCTTTC  498

seq1  AGATAGGTTGCCAAATAATGACTGCAACAGCAAGGAATAATTACAGTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGTTGCCAAATAATGACTGCAACAGCAAGGAATAATTACAGTTTA  548

seq1  TTGAAAAGAACTCCCTATGTGCTACAGAGCCTTCTGAGCACTGTATATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGAACTCCCTATGTGCTACAGAGCCTTCTGAGCACTGTATATGA  598

seq1  TAGTTTTCTGTCAGGGTATCCTCTTAACACACAGAAGCACTATTAGTATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCTGTCAGGGTATCCTCTTAACACACAGAAGCACTATTAGTATT  648

seq1  TCACAGATAAGTAAGTTATCAGCCAAGCCAAGACTGGAGCTATGGAATAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATAAGTAAGTTATCAGCCAAGCCAAGACTGGAGCTATGGAATAT  698

seq1  TATTCACTGAGCTAAGTAAGCAGGGTGCACCTAGAGACCAGGTCAGCAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTGAGCTAAGTAAGCAGGGTGCACCTAGAGACCAGGTCAGCAGC  748

seq1  TACCCTCATTCTCTCTCCATCTGCATAGGCCTTAATACCAAGAACCAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCATTCTCTCTCCATCTGCATAGGCCTTAATACCAAGAACCAGCT  798

seq1  TCACTAGGGCAGATAGCATGTATTTATATTTAAGAGTGCATTATTCAGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGGGCAGATAGCATGTATTTATATTTAAGAGTGCATTATTCAGTT  848

seq1  CTTGTGACAGATTAATGACTAAAGGAGAGAGGTGTTTAGGACTACATTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACAGATTAATGACTAAAGGAGAGAGGTGTTTAGGACTACATTGG  898

seq1  AACTTACACCAAAATACCAAGCTTAGGGACATTGAGATAACTCAGCAGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACACCAAAATACCAAGCTTAGGGACATTGAGATAACTCAGCAGGT  948

seq1  AAAGGTGCTTGCCGCCAAACCTGACAGCCTGAGTCCGGGCCCCAGAATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGCTTGCCGCCAAACCTGACAGCCTGAGTCCGGGCCCCAGAATTC  998