BAC Information

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BAC

Clone NameB6Ng01-069I03
Chromosome2 (Build37)
Map Location 35,307,081 - 35,307,818
singlet/doubletsinglet
Overlap geneGgta1
Upstream geneMapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik
Downstream geneLOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069I03.bB6Ng01-069I03.g
ACCDH887794DH887795
length309739
definitionDH887794|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I03, 5' end.DH887795|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aacccccaacacccaagtggtgacttcatggtgatgcgtttgcagaggac
cctgggtaagttctcagcacccatatataatggctctcaacctcttgtag
ctccaattccaggagatcaccatctactgacttttgtgggttcctacaca
cacaaactcatgcatacaagctcatgcagtgtgtgtgtgtgtgtgggaac
ccacaaaagtgagtagatggtgatctcgtggaattggagctacaagaggt
tgagagccattatatatgggtgctgagaacttaccgagggtcctctgcaa
acgcatcac
gaattcatggttggcatgcgttatagaccacagagttctctggttggcac
acaccagtgttggtgtggcctgtggagacctgctttgggcctttgcttgc
ccttttttttttaaaaaattgtataagagtttttgttaacgtgtgctaag
tgcgctgtgtgtgtgcctggtgtctgcagaggtcagaagtagctattgga
tcccttggaattggagttatagacggatgtgagctaccatgtgagttcaa
gaaacaaacctaggtctttagaagaacaacacatgcgcctaacctctgag
ccatctctctagcatcatgcctcagtccttgacggctatgagatctgagt
cctgctccatcggttggctactaggaacgttgccttctctcctgagagga
ggctggtgggaggggaggcattggggaagtgaaagagttgttgagattta
ggccagactggtcaccatgtaggccagaaaggtcaccatttaatatgctt
acttacccagaattatttctgagaatccttctggatctaaaagaggaagt
aaggatagattgtccaagtctcagccagggcttggttgatctggtgccca
atctccacatggagactgcaaagcttggggtgcagacatgagagaggctg
tgggactcttctgtggaagcatggcttgtacccagagtgagctggggtag
agggggagcattttaattatagagaggcctggaagctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35307081_35307818
seq2: B6Ng01-069I03.g_68_806 (reverse)

seq1  TCAGCTTCCAGGCCTCTCTTTGGTTTAAATGCTCCCCCTCTACCCCAGCT  50
      | ||||||||||||||||| |  || ||||||||||||||||||||||||
seq2  TAAGCTTCCAGGCCTCTCTATAATTAAAATGCTCCCCCTCTACCCCAGCT  50

seq1  CACTCTGGGTAC-AGCCATGCTTCCACAGAAGAGTCCCACAGCCTCTCTC  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGGTACAAGCCATGCTTCCACAGAAGAGTCCCACAGCCTCTCTC  100

seq1  ATGTCTGCACCCCAAGCTTTGCAGTCTCCATGTGGAGATTGGGCACCAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCACCCCAAGCTTTGCAGTCTCCATGTGGAGATTGGGCACCAGA  150

seq1  TCAACCCAGCCCTGGCTGAGACTTGGACAATCTATCCTTACTTCCTCTTT  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAAGCCCTGGCTGAGACTTGGACAATCTATCCTTACTTCCTCTTT  200

seq1  TAGATCCAGAAGGATTCTCAGAAATAATTCTGGGTAAGTAAGCATATTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCAGAAGGATTCTCAGAAATAATTCTGGGTAAGTAAGCATATTAA  250

seq1  ATGGTGACCTTTCTGGCCTACATGGTGACCAGTCTGGCCTAAATCTCAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGACCTTTCTGGCCTACATGGTGACCAGTCTGGCCTAAATCTCAAC  300

seq1  AACTCTTTCACTTCCCCAATGCCTCCCCTCCCACCAGCCTCCTCTCAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCACTTCCCCAATGCCTCCCCTCCCACCAGCCTCCTCTCAGGA  350

seq1  GAGAAGGCAACGTTCCTAGTAGCCAACCGATGGAGCAGGACTCAGATCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAACGTTCCTAGTAGCCAACCGATGGAGCAGGACTCAGATCTC  400

seq1  ATAGCCGTCAAGGACTGAGGCATGATGCTAGAGAGATGGCTCAGAGGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCGTCAAGGACTGAGGCATGATGCTAGAGAGATGGCTCAGAGGTTA  450

seq1  GGCGCATGTGTTGTTCTTCTAAAGACCTAGGTTTGTTTCTTGAACTCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCATGTGTTGTTCTTCTAAAGACCTAGGTTTGTTTCTTGAACTCACA  500

seq1  TGGTAGCTCACATCCGTCTATAACTCCAATTCCAAGGGATCCAATAGCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTCACATCCGTCTATAACTCCAATTCCAAGGGATCCAATAGCTA  550

seq1  CTTCTGACCTCTGCAGACACCAGGCACACACACAGCGCACTTAGCACACG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACCTCTGCAGACACCAGGCACACACACAGCGCACTTAGCACACG  600

seq1  TTAACAAAAACTCTTATACAATTTTTTAAAAAAAAAAGGGCAAGCAAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAAACTCTTATACAATTTTTTAAAAAAAAAAGGGCAAGCAAAGG  650

seq1  CCCAAAGCAGGTCTCCACAGGCCACACCAACACTGGTGTGTGCCAACCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCAGGTCTCCACAGGCCACACCAACACTGGTGTGTGCCAACCAG  700

seq1  AGAACTCTGTGGTCTATAACGCATGCCAACCATGAATTC  738
      |||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTGTGGTCTATAACGCATGCCAACCATGAATTC  739