BAC Information

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BAC

Clone NameB6Ng01-070E18
Chromosome2 (Build37)
Map Location 56,445,697 - 56,446,885
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070E18.bB6Ng01-070E18.g
ACCDH888341DH888342
length1,0201,178
definitionDH888341|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E18, 5' end.DH888342|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattaaattctcagtcaaatagatggaattagaaaatatcaccct
gagcgaggtaacccagtcacaaaagaacatacatggtatgcactcactga
taagtggatactagcccaaaagctcagaatatccatgatacaactcacag
actgtctgaagcttaacaagaaggaaggccaaagtgtggatacttctatc
ccacttatgagagggaacaaaatgatcataggagacagatagagagatgg
accttagtgggagaggggaggggagaaagaagtgggagcaggaccatgta
taggaaaagacagtagagaagtccagagggcctagagaacaatagaaata
ggtgggggtggggggaacttggggaaccactagacaggcccaaatggcaa
agatggaggatgcttccaggacccaatgacgatgacattagctgaaatac
ctaacagcagagagatagaacctaaagagaccaccccctttagatagact
tggtccccagtggaggtatggaggtacccaccccacatttttttttaaca
caaaactcttcctgtctaatgaaaattcagggacaaaaatggagcatagg
ctgaaggaaaggccatccatagatccattccctttgcaacaccaaaccta
acactattgctggtcaagaggtatgtgcagataggagcctggtatagctg
ttctctgagaggctcctctagcacctaagacagatgcagatactcatagc
caaacattgtactgagccctggggacctcagtggaatagttaggggaagg
gctgaaggagcttaatggtgattgcaaccccataggaagaaaagcaatat
caactaacaggacacttgaaaacttcccagaggctaaaccaccgacaaaa
gagtatacatggggcatctatggcacctcttcatcactgggaggggagct
gcttgtcctgtggaagcttgatgcccaagaagagggaagctaacgggtga
gggtagtggtggggtgggaa

gaattctggacacttcacaaagcaaaatgcttgctgccaccttcaaggaa
ctcaaactatctgatttttttatttgctgctgccattagattgaaatgat
ttttcttcagtttgctcaaagccagatttaaagtcaggtcccagaggtaa
cgggaaagtcgatcccctaagctgcttggtcgttgtttgctttttttaca
tgtaatatcccacttctaagccagagtataatttaaaatacaaaacacac
tctacataaatatgtcctctagaaattttgtaatctgacatttagtagaa
gttaactaagtgtctaatattatgttgatggagcgaaatggagaaattag
aaatactcttgaagacaattatttctcaatagcgttctacctgtttttta
aagctacgttatttccttgctgcttcaagttaaaaatcacccatgctata
ttctcctttttaacatagatctcgcagattgcttatttatgatgcttcaa
aataagtctcaaatcattccacacatttcacatgatatgagccgcctaga
gccactcagggagctctggtttgcagacactttgtgttttctgggaacag
caaagggttacttccgttcctgtgctgcgagtacgagcaacaggaatcca
tgggtttaatttgtccatgtctttcatttgataccaccagtattaatagc
tttgcaaggaaattctgcagtcattaatcataataattaatcagatccaa
ttatatcgcatataaatgcgaacaaattgctgaaaaaataatgatctatc
accaacgtgtcacaaggaaaaagagactaaaatagtaattagaagcaggg
atttagttgtgtatgagtgccctgcaactgattttaactgtatgatgatc
tgatgatgtaattagtagaaagtctagcatgccttttctgcagaccatct
aatgactgcacaagtgggaaaatcagcttccctttctcgaaacattctgc
gcttattctatcatcttgcgtttctgggtgaagttgatataaagcttgta
tcaatgcagggttctaaatgttcctgtcatggctttctggaattataaag
aatcttttaagtaagactgactgttactgagggttagaattccagaatgc
caatgcatctttttttttaactctgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56445697_56446885
seq2: B6Ng01-070E18.g_67_1244 (reverse)

seq1  TTACAAGAGTTTAAAAAAAAAAGATGCCATGTGGGCTATCTGGATTTCTA  50
      |||| ||||||  ||||||||||||||    | |||  |||||| |||||
seq2  TTAC-AGAGTT--AAAAAAAAAGATGC---ATTGGCATTCTGGAATTCTA  44

seq1  A-CCTCAGTTAACAGTCAGTCTTACTTTAAAAGA-TCTTTATAA-TCCAG  97
      | |||||| |||||||||||||||| |||||||| ||||||||| |||||
seq2  ACCCTCAG-TAACAGTCAGTCTTAC-TTAAAAGATTCTTTATAATTCCAG  92

seq1  AAAACCCATGACAGGAACAATTTAGAACCCTGCATTTGAATACAAGCTTT  147
       ||| ||||||||||||| |||||||||||||||||   |||||||||||
seq2  -AAAGCCATGACAGGAAC-ATTTAGAACCCTGCATT--GATACAAGCTTT  138

seq1  ATATCAACTTCACCCAGAAACGCAAGATGATAAGAATAAGCGCAGAATGT  197
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATATCAACTTCACCCAGAAACGCAAGATGAT-AGAATAAGCGCAGAATGT  187

seq1  TTCGAGAAAAGGGAAGCTGATTTTCCCACTTGTGCAGTCATTAGATGGTC  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAG-AAAGGGAAGCTGATTTTCCCACTTGTGCAGTCATTAGATGGTC  236

seq1  TGCAGAAAAGGCATGCTAGACTTTCTACTAATTACATCATCAGATCATCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAAGGCATGCTAGACTTTCTACTAATTACATCATCAGATCATCA  286

seq1  TACAGTTAAAATCAGTTGCAGGGCACTCATACACAACTAAATCCCTGCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTAAAATCAGTTGCAGGGCACTCATACACAACTAAATCCCTGCTT  336

seq1  CTAATTACTATTTTAGTCTCTTTTTCCTTGTGACACGTTGGTGATAGATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTACTATTTTAGTCTCTTTTTCCTTGTGACACGTTGGTGATAGATC  386

seq1  ATTATTTTTTCAGCAATTTGTTCGCATTTATATGCGATATAATTGGATCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTCAGCAATTTGTTCGCATTTATATGCGATATAATTGGATCT  436

seq1  GATTAATTATTATGATTAATGACTGCAGAATTTCCTTGCAAAGCTATTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATTATTATGATTAATGACTGCAGAATTTCCTTGCAAAGCTATTAA  486

seq1  TACTGGTGGTATCAAATGAAAGACATGGACAAATTAAACCCATGGATTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGGTATCAAATGAAAGACATGGACAAATTAAACCCATGGATTCC  536

seq1  TGTTGCTCGTACTCGCAGCACAGGAACGGAAGTAACCCTTTGCTGTTCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCGTACTCGCAGCACAGGAACGGAAGTAACCCTTTGCTGTTCCC  586

seq1  AGAAAACACAAAGTGTCTGCAAACCAGAGCTCCCTGAGTGGCTCTAGGCG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACAAAGTGTCTGCAAACCAGAGCTCCCTGAGTGGCTCTAGGCG  636

seq1  GCTCATATCATGTGAAATGTGTGGAATGATTTGAGACTTATTTTGAAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATATCATGTGAAATGTGTGGAATGATTTGAGACTTATTTTGAAGCA  686

seq1  TCATAAATAAGCAATCTGCGAGATCTATGTTAAAAAGGAGAATATAGCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATAAGCAATCTGCGAGATCTATGTTAAAAAGGAGAATATAGCAT  736

seq1  GGGTGATTTTTAACTTGAAGCAGCAAGGAAATAACGTAGCTTTAAAAAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATTTTTAACTTGAAGCAGCAAGGAAATAACGTAGCTTTAAAAAAC  786

seq1  AGGTAGAACGCTATTGAGAAATAATTGTCTTCAAGAGTATTTCTAATTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAACGCTATTGAGAAATAATTGTCTTCAAGAGTATTTCTAATTTC  836

seq1  TCCATTTCGCTCCATCAACATAATATTAGACACTTAGTTAACTTCTACTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCGCTCCATCAACATAATATTAGACACTTAGTTAACTTCTACTA  886

seq1  AATGTCAGATTACAAAATTTCTAGAGGACATATTTATGTAGAGTGTGTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGATTACAAAATTTCTAGAGGACATATTTATGTAGAGTGTGTTT  936

seq1  TGTATTTTAAATTATACTCTGGCTTAGAAGTGGGATATTACATGTAAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTAAATTATACTCTGGCTTAGAAGTGGGATATTACATGTAAAAA  986

seq1  AAGCAAACAACGACCAAGCAGCTTAGGGGATCGACTTTCCCGTTACCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAACGACCAAGCAGCTTAGGGGATCGACTTTCCCGTTACCTCT  1036

seq1  GGGACCTGACTTTAAATCTGGCTTTGAGCAAACTGAAGAAAAATCATTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGACTTTAAATCTGGCTTTGAGCAAACTGAAGAAAAATCATTTC  1086

seq1  AATCTAATGGCAGCAGCAAATAAAAAAATCAGATAGTTTGAGTTCCTTGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATGGCAGCAGCAAATAAAAAAATCAGATAGTTTGAGTTCCTTGA  1136

seq1  AGGTGGCAGCAAGCATTTTGCTTTGTGAAGTGTCCAGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCAGCAAGCATTTTGCTTTGTGAAGTGTCCAGAATTC  1178


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