BAC Information

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BAC

Clone NameB6Ng01-071A12
Chromosome7 (Build37)2 (Build37)
Map Location 24,763,411 - 24,764,092142,775,346 - 142,775,865
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575
Downstream geneV1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071A12.bB6Ng01-071A12.g
ACCDH888848DH888849
length1,0391,053
definitionDH888848|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A12, 5' end.DH888849|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,763,411 - 24,764,092)(142,775,346 - 142,775,865)
sequence
gaattccagcatggagtgatgaaggtgggcacaatcacatcactacttgg
agcaggattattagtgataattgatgataaagagatccagtttttaaatg
atttaatccctgacaggttagccacattgtggagaaggccatattttgaa
aaggaatggatttgatggaacaaaagaaaatcaaacgttgtgtggttagg
gctgagagagtagaagtatagaaaatcatgcaataccacatgcctgtaat
cctagcatgtgaaatgtatgatgaaaattcatctcatgtttgaaacttgc
ccgttcttattaaatgttatgattccaggcattgctgcacagcaaggttc
ttcctcataaagttgaggagtaatatacaagttttgtttcctattcttaa
aaaagctttcatatataacaatgaatataaattatacatacaccactcat
tttctgccatttctctactctcttcaatatatctctcattatgcttcaca
tcctctatttttattaaaaatagatttttccacatacagtatatgctgtc
tatagtttcttctacttcatttcctcttagtttctaaacattttacctcc
cagccagatctattccctttctccctttcattaggaaacaaacaggcttc
taagggataatagtaaaactcaaaatattaacaaaaccagtaaaaataat
agaacaaaaaagataaaacaaaaactaacacatcaaaattggacaagact
gacaaacaaaagggtccaagataagggactagagtgagagatccacttgt
ttagatattcacaaatcccctaaacactaaactctaagctataatataga
tacagagggtctgatgtagacatgtgcaggtcctgtgtttgttccttcag
gctctgtttctaacttcatgtcatcatttgaaaaattaccctgtgactcc
atgagtgctttccatagagttatgggtgcctggtcatgcaccagaccatg
ggcagagagtcaatcatacagaaagaaaagtgaccctcc
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacaagatgatcatatggtttttgtcttt
gagtttctttatttaatggattacattgatgaatttccatatattaaacc
atcccctgcatccctggaataaaacctacttgatcaggaaggatgattac
tttaatgtgttcttggattcggttagcgagaattttattgaggattttta
catcaatattcataagagaaattggtctgaacttctctatctttgttgga
tctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagtt
gggtagagtaccttctacttctatcttgtgaaaaagtttgtgcagaactg
gaattagatcttctttgaaggtctgatagaactctgcactaaacccatct
ggtcctgggctttttggctgggagactatttataactgcttctatttctt
taggggatatgggactgtttagaaggtcaacttgatcctgattcaacttt
ggtacctggtatctgtccagaaatttgtccagtttgtccatgttttccag
ttttgttgagtacagccttttgtaaaaggatctgatggtgttttggattt
cttcaggatctgttgttatgtctcccttttcagttctgattttgttaatt
agaattttgtctctgtaccctctagtgagtctagctaagggtttatctat
cttgttgattttctcatagaaccaactcctcgtttggttaattctttgaa
tagttcttcttgtttccacttggttgatttcacccctgagtttgattatt
tcctgccgtctactcctcttgggtgaatttgcttcctttttttctagagc
tttagatgtgttgtcaagctgctagtatgtgctctctcccgtttcttctt
ggaggcactcagagctatgagtttctctcttagaaatactttcattgtgt
cccaaaggtttgggtacgttgtggcttcatttcattaaactctaaaagtc
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24763411_24764092
seq2: B6Ng01-071A12.b_47_728 (reverse)

seq1  GTTAATATTTTGAGTTTTACTATTATCCCTTAGAAGCCTGTTTGTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATTTTGAGTTTTACTATTATCCCTTAGAAGCCTGTTTGTTTCCT  50

seq1  AATGAAAGGGAGAAAGGGAATAGATCTGGCTGGGAGGTAAAATGTTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGGGAGAAAGGGAATAGATCTGGCTGGGAGGTAAAATGTTTAGA  100

seq1  AACTAAGAGGAAATGAAGTAGAAGAAACTATAGACAGCATATACTGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGAGGAAATGAAGTAGAAGAAACTATAGACAGCATATACTGTATG  150

seq1  TGGAAAAATCTATTTTTAATAAAAATAGAGGATGTGAAGCATAATGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATCTATTTTTAATAAAAATAGAGGATGTGAAGCATAATGAGAG  200

seq1  ATATATTGAAGAGAGTAGAGAAATGGCAGAAAATGAGTGGTGTATGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGAAGAGAGTAGAGAAATGGCAGAAAATGAGTGGTGTATGTATA  250

seq1  ATTTATATTCATTGTTATATATGAAAGCTTTTTTAAGAATAGGAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTCATTGTTATATATGAAAGCTTTTTTAAGAATAGGAAACAAA  300

seq1  ACTTGTATATTACTCCTCAACTTTATGAGGAAGAACCTTGCTGTGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATATTACTCCTCAACTTTATGAGGAAGAACCTTGCTGTGCAGCA  350

seq1  ATGCCTGGAATCATAACATTTAATAAGAACGGGCAAGTTTCAAACATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGAATCATAACATTTAATAAGAACGGGCAAGTTTCAAACATGAG  400

seq1  ATGAATTTTCATCATACATTTCACATGCTAGGATTACAGGCATGTGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTTCATCATACATTTCACATGCTAGGATTACAGGCATGTGGTAT  450

seq1  TGCATGATTTTCTATACTTCTACTCTCTCAGCCCTAACCACACAACGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGATTTTCTATACTTCTACTCTCTCAGCCCTAACCACACAACGTTT  500

seq1  GATTTTCTTTTGTTCCATCAAATCCATTCCTTTTCAAAATATGGCCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTTTTGTTCCATCAAATCCATTCCTTTTCAAAATATGGCCTTCT  550

seq1  CCACAATGTGGCTAACCTGTCAGGGATTAAATCATTTAAAAACTGGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGTGGCTAACCTGTCAGGGATTAAATCATTTAAAAACTGGATCT  600

seq1  CTTTATCATCAATTATCACTAATAATCCTGCTCCAAGTAGTGATGTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCATCAATTATCACTAATAATCCTGCTCCAAGTAGTGATGTGATT  650

seq1  GTGCCCACCTTCATCACTCCATGCTGGAATTC  682
      ||||||||||||||||||||||||||||||||
seq2  GTGCCCACCTTCATCACTCCATGCTGGAATTC  682

seq1: chr2_142775346_142775865
seq2: B6Ng01-071A12.g_67_585 (reverse)

seq1  AACAGTCCCATATCCCCTAGAGAAATAGAAGCAGTTATAAATAGTCTCCC  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAAATAGTCTCCC  50

seq1  AGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGA  100
      ||||  |||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCC--AAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGA  98

seq1  CCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTTTCACAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTTTCACAAGATA  148

seq1  GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCT  198

seq1  GATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAA  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAAGTTCAGACCAA  248

seq1  TTTCTCTTATGAATATCGATGTAAAAATCCTCAATAAAATTCTCGCTAAC  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCTCTTATGAATATTGATGTAAAAATCCTCAATAAAATTCTCGCTAAC  298

seq1  CGAATCCAAGAACACATTAAAGCAATCATCCATACTGACCAAGTAGGTTT  350
      |||||||||||||||||||||| |||||||| | |||| |||||||||||
seq2  CGAATCCAAGAACACATTAAAGTAATCATCCTTCCTGATCAAGTAGGTTT  348

seq1  TATTCCAGGGATGCA-GGGATGGTTTAATATACGAAAATCCATCAATGTA  399
      ||||||||||||||| |||||||||||||||| | |||| ||||||||||
seq2  TATTCCAGGGATGCAGGGGATGGTTTAATATATGGAAATTCATCAATGTA  398

seq1  ATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTT  449
      |||||||| ||||| |||||||||||||||||||| |||||||||| |||
seq2  ATCCATTAAATAAAGAAACTCAAAGACAAAAACCATATGATCATCTTGTT  448

seq1  AGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAG  498

seq1  TTCTGGAAAGATCAGGAATTC  520
      |||||||||||||||||||||
seq2  TTCTGGAAAGATCAGGAATTC  519