BAC Information

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BAC

Clone NameB6Ng01-071D21
Chromosome2 (Build37)
Map Location 35,738,492 - 35,887,035
singlet/doubletdoublet
Overlap geneTtll11
Upstream geneD730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
Downstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071D21.bB6Ng01-071D21.g
ACCDH888996DH888997
length1,1941,168
definitionDH888996|Mus musculus domesticus DNA, BAC clone: B6Ng01-071D21, 5' end.DH888997|Mus musculus domesticus DNA, BAC clone: B6Ng01-071D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,738,492 - 35,739,717)(35,885,864 - 35,887,035)
sequence
gaattctttggcatcagctgaacttcaggatttcaaccaaaggtcagctg
tgtatacacacagatggaccagtctgttggagagggagatggttcctctg
gaagagtctgttcccagaagcatgatcaccagcaggaggatgctgcccct
tttgttaggatggcacgcttagtgcacatagttctggaaaggtggctcaa
gagttaagagtgctggctactttttcagacaactggggttcaattcctag
cactcacatgtagctagcaaccatttctaactccagtttcaggggaatct
gacaccctctcctggcctcagtgggcactgactgcatcatagacatgcag
ggcaaagcgtccatatacataaaataaaaatagtaagccttttaataaat
gaattcatcatttctattattactcagtactgccaatgcaagcgggagga
gtctgagcttatgagcgttctgattcatgtgcttcctccctcttctcgag
gacaggacaaagccacactccttggtcacactcagaatcccagctatgcc
aactgtgtgcctgggaggttcctcttctcagttgctctcagaatgcctcc
cctttgtcctgggttctatgtagaatctacctgctttggaggttcacctg
ttggttctgatggtaaaggagcccagagaaatgcttgccaaggtaagaag
agtggacatctcaatcagtcgcaccgaggcaggctccctccattctttac
agcagggctattatggtgagaagggtaaatgaaatgggagtagactgtgc
caagttactgtgggaagggggccttctgggcttccataaagtcatgtatc
aaacagctgtagttgaatcaaaggcaagcagagtataacccaggcactaa
gaggtatcacaggctccataaaatctcccccagattcctccgcgcctgcc
tccctggcacactttataaattctgggattccagacgctataattcccaa
ggaaagtccagttaccagaaagacagacatcagacaggaaagcagtaaag
tgccctctgactagaacgtacctccccaactagactctctggagatagct
ggggacgatgttctgatagtttcaaacaaagactggcacaaaatacctga
gaaaggttttctcattccttccttgagctgactcaatgtgcagc
gaattcatcgtggtggagaggcatagcaagaaactgagagaccacatcct
caaactcatgcaggaagtagagagtggactggaaggggtgtgaggatcta
aactcttaaagcctgaaactcagtgatgtacttctcccaacagggctgca
ctcctcataacctctccacacagcaccacctgctaggcttcaaatgcctg
agcctgtggggaatgaacatttcttattcaaaccgccatacctctgtagt
cccagaccttaggggttggtgtgatgatttgtatatgctcggaccaggga
gtggaactattacaaggtgtggccctgttggagtaggtgtgtcactatga
gtgtggactttaaaaccctcgtcctagctgcctggaagtcaatattctgc
tagcagccttcagatgaagatgcagaattctcagttcctcctgcaccatt
cctgcctggatgctgccattctcccaccttggtgataatggactgaacct
ctgaacctgcaagccagccccaattaaatgttgtccttataagagttgcc
ttggtcatggtgtctgttcaccgcagtaaaaccctaagacagttggagac
aggaaatatactcacagatgaccaaggccatcttcagatgcataacaagt
tcaaggtcaggctaggctagatgaaacatactcaaaaaaagttattgaga
tttgcaagcatgtgaaatttgtttcacacacaagtggtggatctgggaag
caatgctggactcctggttccagtggccatgctcttagtcattggactca
tcaggcctcaagcctggggtgcacattaaaagcaccttttacccatccat
ttcaccccctaccatgcacatgagtctatgctgttccaaacccttcaggg
ttcctgaagcatcccacacgccatgagagcctggccatttctaacctctc
cttgctgtgtctttttggaatattgatattttatctactgcatgagattc
agctttacagctttctgtggtcagcatatgacttaaaactaataattggg
gattaaaggataccatgcttgctatttacatttcataagagaatgaaagg
tattttttcctctctgtcatgggggaagaaggcatgaaggtccgataaac
ttctgaaaatccattaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35738492_35739717
seq2: B6Ng01-071D21.b_45_1238

seq1  GAATTCTTTGGCATCAGCTGAACTTCAGGATTTCAACCAAAGGTCAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGCATCAGCTGAACTTCAGGATTTCAACCAAAGGTCAGCTG  50

seq1  TGTATACACACAGATGGACCAGTCTGTTGGAGAGGGAGATGGTTCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACACACAGATGGACCAGTCTGTTGGAGAGGGAGATGGTTCCTCTG  100

seq1  GAAGAGTCTGTTCCCAGAAGCATGATCACCAGCAGGAGGATGCTGCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCTGTTCCCAGAAGCATGATCACCAGCAGGAGGATGCTGCCCCT  150

seq1  TTTGTTAGGATGGCACGCTTAGTGCACATAGTTCTGGAAAGGTGGCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGGATGGCACGCTTAGTGCACATAGTTCTGGAAAGGTGGCTCAA  200

seq1  GAGTTAAGAGTGCTGGCTACTTTTTCAGACAACTGGGGTTCAATTCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAGAGTGCTGGCTACTTTTTCAGACAACTGGGGTTCAATTCCTAG  250

seq1  CACTCACATGTAGCTAGCAACCATTTCTAACTCCAGTTTCAGGGGAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACATGTAGCTAGCAACCATTTCTAACTCCAGTTTCAGGGGAATCT  300

seq1  GACACCCTCTCCTGGCCTCAGTGGGCACTGACTGCATCATAGACATGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCTCTCCTGGCCTCAGTGGGCACTGACTGCATCATAGACATGCAG  350

seq1  GGCAAAGCGTCCATATACATAAAATAAAAATAGTAAGCCTTTTAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCGTCCATATACATAAAATAAAAATAGTAAGCCTTTTAATAAAT  400

seq1  GAATTCATCATTTCTATTATTACTCAGTACTGCCAATGCAAGCGGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTTCTATTATTACTCAGTACTGCCAATGCAAGCGGGAGGA  450

seq1  GTCTGAGCTTATGAGCGTTCTGATTCATGTGCTTCCTCCCTCTTCTCGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCTTATGAGCGTTCTGATTCATGTGCTTCCTCCCTCTTCTCGAG  500

seq1  GACAGGACAAAGCCACACTCCTTGGTCACACTCAGAATCCCAGCTATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACAAAGCCACACTCCTTGGTCACACTCAGAATCCCAGCTATGCC  550

seq1  AACTGTGTGCCTGGGAGGTTCCTCTTCTCAGTTGCTCTCAGAATGCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTGCCTGGGAGGTTCCTCTTCTCAGTTGCTCTCAGAATGCCTCC  600

seq1  CCTTTGTCCTGGGTTCTATGTAGAATCTACCTGCTTTGGAGGTTCACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCCTGGGTTCTATGTAGAATCTACCTGCTTTGGAGGTTCACCTG  650

seq1  TTGGTTCTGATGGTAAAGGAGCCCAGAGAAATGCTTGCCAAGGTAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTGATGGTAAAGGAGCCCAGAGAAATGCTTGCCAAGGTAAGAAG  700

seq1  AGTGGACATCTCAATCAGTCGCACCGAGGCAGGCTCCCTCCATTCTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACATCTCAATCAGTCGCACCGAGGCAGGCTCCCTCCATTCTTTAC  750

seq1  AGCAGGGCTATTATGGTGAGAAGGGGTAAATGAAATGGGAGTAGACTGTG  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCAGGGCTATTATGGTGAGAA-GGGTAAATGAAATGGGAGTAGACTGTG  799

seq1  CCAAGTTACTGTGGGAAGGGGGCCTTCTGGGCTTCCAT-AAGTCATGTAT  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCAAGTTACTGTGGGAAGGGGGCCTTCTGGGCTTCCATAAAGTCATGTAT  849

seq1  CAAACAGCTGTAGTTGAATCAAAGGCAAGCAGAGTATAACCCAGGCACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCTGTAGTTGAATCAAAGGCAAGCAGAGTATAACCCAGGCACTA  899

seq1  AGAGGTATCACAGGCTCCATAAAATCTCCCCCAGATTCCTCCGCGCCTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATCACAGGCTCCATAAAATCTCCCCCAGATTCCTCCGCGCCTGC  949

seq1  CTCCCTGGCACACTTTATAAATTCTGGGATTCCAGAAGGCTATAATTCCC  999
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  CTCCCTGGCACACTTTATAAATTCTGGGATTCCAG-ACGCTATAATTCCC  998

seq1  AAGGAAAGTCCAGTTACCAGAAAGACAGACATTCAGGACAGGAAAGCAAG  1049
      ||||||||||||||||||||||||||||||| ||| ||||||||||| ||
seq2  AAGGAAAGTCCAGTTACCAGAAAGACAGACA-TCA-GACAGGAAAGC-AG  1045

seq1  TAAAGTGGCCCCTCTGGACTTAGACGTACCTCCCCCAAACTAGGACCTCC  1099
      |||||||  |||||| ||||   ||||||||||||  ||||| |||   |
seq2  TAAAGTG--CCCTCT-GACTAGAACGTACCTCCCC--AACTA-GAC--TC  1087

seq1  TCTGAGAATAGCTGGGGACGATG-TCTGATAGGTTTCAAAACAAAGACTT  1148
      ||||   |||||||||||||||| ||||||| ||||| ||||||||||| 
seq2  TCTGGAGATAGCTGGGGACGATGTTCTGATA-GTTTC-AAACAAAGACT-  1134

seq1  GGGCAACCAAAATACCTTGAGAAAAGGGGTTTTTCTCATTTTCCCTTTCT  1198
       ||||  ||||||||| |||||||    | ||||||||||   |||   |
seq2  -GGCA--CAAAATACC-TGAGAAA----GGTTTTCTCATT---CCT---T  1170

seq1  CTTTGATGCTGAACTTTCAATGTGCAGC  1226
      | |||| |||||    ||||||||||||
seq2  CCTTGA-GCTGA---CTCAATGTGCAGC  1194

seq1: chr2_35885864_35887035
seq2: B6Ng01-071D21.g_66_1233 (reverse)

seq1  ATTAATGGATTCTCAGAGTTCTACTGCGACCCTACTGCCTTCCTCCCACT  50
      ||||||||||| |||||  | || |  |||| |  ||||||| |||| | 
seq2  ATTAATGGATTTTCAGAAGTTTA-TCGGACCTTCATGCCTTCTTCCCCCA  49

seq1  GAACAGAG-GGGAAAAATA-CATTCATCTCT-TTATG-AATGTAAATGAG  96
        |||||| || ||||||| | ||||| ||| ||||| ||||||||| ||
seq2  TGACAGAGAGGAAAAAATACCTTTCAT-TCTCTTATGAAATGTAAAT-AG  97

seq1  CAAGCATGGTATCATTTAAT-CACAATATATATGTCTAAGTCATATGCTG  145
      ||||||||||||| |||||| | ||||   ||  | ||||||||||||| 
seq2  CAAGCATGGTATCCTTTAATCCCCAATTATTAGTTTTAAGTCATATGCT-  146

seq1  GACCACAGAAAGCTGTAAAGCTGAATCTCATGCAGTAGATAAAAATATCA  195
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GACCACAGAAAGCTGTAAAGCTGAATCTCATGCAGTAGAT-AAAATATCA  195

seq1  ATATTCCAAAAAGACACAGCAAGGAGAGGTTAGAAATGGGCCAGGCTCTC  245
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATATTCCAAAAAGACACAGCAAGGAGAGGTTAGAAAT-GGCCAGGCTCTC  244

seq1  ATGGCGTGTGGGATGCTTTCAGGAACCCCTGAAGGTTTTGGAACAGCATA  295
      |||||||||||||||| |||||||| ||||||||| ||||||||||||||
seq2  ATGGCGTGTGGGATGC-TTCAGGAA-CCCTGAAGGGTTTGGAACAGCATA  292

seq1  GACTCATGTTGCATGGTAGGGGGTGAAATGGATGGGTAAAAGGTGCTTTT  345
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATG-TGCATGGTAGGGGGTGAAATGGATGGGTAAAAGGTGCTTTT  341

seq1  AATGTGCACCCCAGGCTTGAGGCCTGATGAGTCCAATGACTAAGAGCATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCACCCCAGGCTTGAGGCCTGATGAGTCCAATGACTAAGAGCATG  391

seq1  GCCACTGGAACCAGGAGTCCAGCATTGCTTCCCAGATCCACCACTTGTGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGAACCAGGAGTCCAGCATTGCTTCCCAGATCCACCACTTGTGT  441

seq1  GTGAAACAAATTTCACATGCTTGCAAATCTCAATAACTTTTTTTGAGTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACAAATTTCACATGCTTGCAAATCTCAATAACTTTTTTTGAGTAT  491

seq1  GTTTCATCTAGCCTAGCCTGACCTTGAACTTGTTATGCATCTGAAGATGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATCTAGCCTAGCCTGACCTTGAACTTGTTATGCATCTGAAGATGG  541

seq1  CCTTGGTCATCTGTGAGTATATTTCCTGTCTCCAACTGTCTTAGGGTTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCATCTGTGAGTATATTTCCTGTCTCCAACTGTCTTAGGGTTTT  591

seq1  ACTGCGGTGAACAGACACCATGACCAAGGCAACTCTTATAAGGACAACAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGGTGAACAGACACCATGACCAAGGCAACTCTTATAAGGACAACAT  641

seq1  TTAATTGGGGCTGGCTTGCAGGTTCAGAGGTTCAGTCCATTATCACCAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGGGCTGGCTTGCAGGTTCAGAGGTTCAGTCCATTATCACCAAG  691

seq1  GTGGGAGAATGGCAGCATCCAGGCAGGAATGGTGCAGGAGGAACTGAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAATGGCAGCATCCAGGCAGGAATGGTGCAGGAGGAACTGAGAA  741

seq1  TTCTGCATCTTCATCTGAAGGCTGCTAGCAGAATATTGACTTCCAGGCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATCTTCATCTGAAGGCTGCTAGCAGAATATTGACTTCCAGGCAG  791

seq1  CTAGGACGAGGGTTTTAAAGTCCACACTCATAGTGACACACCTACTCCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACGAGGGTTTTAAAGTCCACACTCATAGTGACACACCTACTCCAA  841

seq1  CAGGGCCACACCTTGTAATAGTTCCACTCCCTGGTCCGAGCATATACAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCACACCTTGTAATAGTTCCACTCCCTGGTCCGAGCATATACAAA  891

seq1  TCATCACACCAACCCCTAAGGTCTGGGACTACAGAGGTATGGCGGTTTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACACCAACCCCTAAGGTCTGGGACTACAGAGGTATGGCGGTTTGA  941

seq1  ATAAGAAATGTTCATTCCCCACAGGCTCAGGCATTTGAAGCCTAGCAGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAATGTTCATTCCCCACAGGCTCAGGCATTTGAAGCCTAGCAGGT  991

seq1  GGTGCTGTGTGGAGAGGTTATGAGGAGTGCAGCCCTGTTGGGAGAAGTAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTGTGGAGAGGTTATGAGGAGTGCAGCCCTGTTGGGAGAAGTAC  1041

seq1  ATCACTGAGTTTCAGGCTTTAAGAGTTTAGATCCTCACACCCCTTCCAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGAGTTTCAGGCTTTAAGAGTTTAGATCCTCACACCCCTTCCAGT  1091

seq1  CCACTCTCTACTTCCTGCATGAGTTTGAGGATGTGGTCTCTCAGTTTCTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCTACTTCCTGCATGAGTTTGAGGATGTGGTCTCTCAGTTTCTT  1141

seq1  GCTATGCCTCTCCACCACGATGAATTC  1172
      |||||||||||||||||||||||||||
seq2  GCTATGCCTCTCCACCACGATGAATTC  1168