BAC Information

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BAC

Clone NameB6Ng01-071H10
Chromosome2 (Build37)
Map Location 145,917,690 - 146,079,047
singlet/doubletdoublet
Overlap geneInsm1
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071H10.bB6Ng01-071H10.g
ACCDH889158DH889159
length1,177337
definitionDH889158|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H10, 5' end.DH889159|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,077,530 - 146,079,047)(145,917,690 - 145,918,026)
sequence
gaattcttggcatataagaaagttcacagcattatggaagagaaagaata
accaaaagcctgtttgtttgtttttttcaccacttaaagaatatagaatg
ataaaatcccagatgaacttcacctacctgtgttcccccaacctgctgga
ggccacaatgaggtattgaagatctggccagcttagaatcctggtggtac
ccacacctctcctgcagctcaatcagaccacaggacagcagcttcattcc
tcacatctcacaaacctacagggcagggttttagacggtcactccaccct
cagaagagtatcctaggacttaataggagaggcatagaagtgggcgaagc
agaaaggtgccctgccttccttgaggctacctcccaggcaggagagaagg
aatcagccatcaggagctccttggtgctaagcaagaaaagacaatggggg
atgagtctgagtgacccgaggaacaggaagtggttctttgagtgagtcct
gtctcactcaaaaagcctcatgtggtggtacaagcctgcaggcccagctc
catgagagactgaaatgagaggattccttgagcccttggcacttaggtct
ttctgtcccagacaagactccttctcgacccattcagggtccctgccttt
gggtacccattgtgttggaacaaatccacaggagtgagcagacatgtgac
caaggggaatccttttattgtcccctcaaaggcagaaaggactaatttgt
tgggtttatggcctgggcaacttttggtaccagtagcaaatgctctcctc
ctttgacccacacacctgagaaatgtaactaatgtgaattgagttattgt
ctgctcccaacttcagcagagtgcatggcaggagctccagtagacaatgc
cttgatcccaggcccacactgcctcctgactgtctaaagacagcacgacc
gtcctgtttgctcgtgtgtctggtcatacactttgcataagtagcccatt
atagactatatccccagtcccaccccagctccagggggctgcttctatca
ataaaactgctacggagttccatcactgctctgatgtttcctggatcctc
tgaacaattagatgcacagtgctaatcccagaaatgtccaccacactaac
tgctcacttttttaagactggtgttgt
tgtgtactttctttagatttgaaagatgtgataaatggggaataaggaca
gaatgggcaagggaggacacagcaggacttgaagaccagggcagccacag
ggaagaatacaagaggaatctcactatggctgcagaaaagaaagaaatga
tgtttcttttagacaaacacaattcaagaaatctcatccgattcccccca
aaaaattgtactatgtcatttttaggtaatgttaaaaagaaaagaaaaga
agaggaaagaaaagaaaagaagagaaaagaaaagaaaagaaaagaaaaga
aaagaaaagaaaagaaaaggggaggggggaggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146077530_146079047
seq2: B6Ng01-071H10.b_43_1219 (reverse)

seq1  ACAACACCAGAATGACTTCAAGATTTAGGGAGAAAACCCACCTGTGGGCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGAAGAGGGGGGCAGCGTAGCGATGAGGTCACGTGGATGTCACCAACA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCCTCTGAGCTGAGCCACTCTACTGACTTCACAGCACCCTCAAAGCAAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACACTTCCTTCAGGTGACACTACTTCTAGTGCCCAAGGCTGTCTCTAAGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGTCCTGTAACTTGACTTCAGCTTTCTTAATACAACTCAAGAGTGGCCTG  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTGAGAGAGGGGCTAGGAGTGTTCTCCCTCTGTGCTCCCTGGGTTTGGTG  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTCACTCATGACTGTATTTTTTAATTCCCTGACAAACAACAGCTTTT  350
                                        || |||| ||| | ||
seq2  ----------------------------------AC-AACACCAG-TCTT  14

seq1  AAAAAAAGTAGCAGTTAGGTGT-GTGGACATTTCTGGGA-TAGCACTGTG  398
      ||||||   |||||||| |||| |||||||||||||||| ||||||||||
seq2  AAAAAAGTGAGCAGTTA-GTGTGGTGGACATTTCTGGGATTAGCACTGTG  63

seq1  CATCCTAATATGTTCAGAAGGATCCAAGGAAACATCAGAGCAGTGATGGA  448
      ||| ||||| ||||||| ||||||| ||||||||||||||||||||||||
seq2  CAT-CTAAT-TGTTCAG-AGGATCC-AGGAAACATCAGAGCAGTGATGGA  109

seq1  ACTCCGTAGCAGTTTTATTGATAGAAGCAGCCCCCTTGGAGCTGGGGTGG  498
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTCCGTAGCAGTTTTATTGATAGAAGCAGCCCCC-TGGAGCTGGGGTGG  158

seq1  GACTGGGGATATAGTCTATAATGGGCTACTTATGCAAAGTGTATGAACCA  548
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACTGGGGATATAGTCTATAATGGGCTACTTATGCAAAGTGTATG-ACCA  207

seq1  GACACACGAGCAAACAGGACGGTCGTGCTGTCTTTAGACAGTCAGGAGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACGAGCAAACAGGACGGTCGTGCTGTCTTTAGACAGTCAGGAGGC  257

seq1  AGTGTGGGCCTGGGATCAAGGCATTGTCTACTGGAGCTCCTGCCATGCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGCCTGGGATCAAGGCATTGTCTACTGGAGCTCCTGCCATGCAC  307

seq1  TCTGCTGAAGTTGGGAGCAGACAATAACTCAATTCACATTAGTTACATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAAGTTGGGAGCAGACAATAACTCAATTCACATTAGTTACATTT  357

seq1  CTCAGGTGTGTGGGTCAAAGGAGGAGAGCATTTGCTACTGGTACCAAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGTGTGGGTCAAAGGAGGAGAGCATTTGCTACTGGTACCAAAAG  407

seq1  TTGCCCAGGCCATAAACCCAACAAATTAGTCCTTTCTGCCTTTGAGGGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGGCCATAAACCCAACAAATTAGTCCTTTCTGCCTTTGAGGGGA  457

seq1  CAATAAAAGGATTCCCCTTGGTCACATGTCTGCTCACTCCTGTGGATTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAGGATTCCCCTTGGTCACATGTCTGCTCACTCCTGTGGATTTG  507

seq1  TTCCAACACAATGGGTACCCAAAGGCAGGGACCCTGAATGGGTCGAGAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACACAATGGGTACCCAAAGGCAGGGACCCTGAATGGGTCGAGAAG  557

seq1  GAGTCTTGTCTGGGACAGAAAGACCTAAGTGCCAAGGGCTCAAGGAATCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGTCTGGGACAGAAAGACCTAAGTGCCAAGGGCTCAAGGAATCC  607

seq1  TCTCATTTCAGTCTCTCATGGAGCTGGGCCTGCAGGCTTGTACCACCACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCAGTCTCTCATGGAGCTGGGCCTGCAGGCTTGTACCACCACA  657

seq1  TGAGGCTTTTTGAGTGAGACAGGACTCACTCAAAGAACCACTTCCTGTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTTTTGAGTGAGACAGGACTCACTCAAAGAACCACTTCCTGTTC  707

seq1  CTCGGGTCACTCAGACTCATCCCCCATTGTCTTTTCTTGCTTAGCACCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGTCACTCAGACTCATCCCCCATTGTCTTTTCTTGCTTAGCACCAA  757

seq1  GGAGCTCCTGATGGCTGATTCCTTCTCTCCTGCCTGGGAGGTAGCCTCAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCCTGATGGCTGATTCCTTCTCTCCTGCCTGGGAGGTAGCCTCAA  807

seq1  GGAAGGCAGGGCACCTTTCTGCTTCGCCCACTTCTATGCCTCTCCTATTA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGGGCACCTTTCTGCTTCGCCCACTTCTATGCCTCTCCTATTA  857

seq1  AGTCCTAGGATACTCTTCTGAGGGTGGAGTGACCGTCTAAAACCCTGCCC  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAGGATACTCTTCTGAGGGTGGAGTGACCGTCTAAAACCCTGCCC  907

seq1  TGTAGGTTTGTGAGATGTGAGGAATGAAGCTGCTGTCCTGTGGTCTGATT  1298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTTGTGAGATGTGAGGAATGAAGCTGCTGTCCTGTGGTCTGATT  957

seq1  GAGCTGCAGGAGAGGTGTGGGTACCACCAGGATTCTAAGCTGGCCAGATC  1348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCAGGAGAGGTGTGGGTACCACCAGGATTCTAAGCTGGCCAGATC  1007

seq1  TTCAATACCTCATTGTGGCCTCCAGCAGGTTGGGGGAACACAGGTAGGTG  1398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACCTCATTGTGGCCTCCAGCAGGTTGGGGGAACACAGGTAGGTG  1057

seq1  AAGTTCATCTGGGATTTTATCATTCTATATTCTTTAAGTGGTGAAAAAAA  1448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATCTGGGATTTTATCATTCTATATTCTTTAAGTGGTGAAAAAAA  1107

seq1  CAAACAAACAGGCTTTTGGTTATTCTTTCTCTTCCATAATGCTGTGAACT  1498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAGGCTTTTGGTTATTCTTTCTCTTCCATAATGCTGTGAACT  1157

seq1  TTCTTATATGCCAAGAATTC  1518
      ||||||||||||||||||||
seq2  TTCTTATATGCCAAGAATTC  1177

seq1: chr2_145917690_145918026
seq2: B6Ng01-071H10.g_75_411

seq1  TGTGTACTTTCTTTAGATTTGAAAGATGTGATAAATGGGGAATAAGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTTTCTTTAGATTTGAAAGATGTGATAAATGGGGAATAAGGACA  50

seq1  GAATGGGCAAGGGAGGACACAGCAGGACTTGAAGACCAGGGCAGCCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGCAAGGGAGGACACAGCAGGACTTGAAGACCAGGGCAGCCACAG  100

seq1  GGAAGAATACAAGAGGAATCTCACTATGGCTGCAGAAAAGAAAGAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATACAAGAGGAATCTCACTATGGCTGCAGAAAAGAAAGAAATGA  150

seq1  TGTTTCTTTTAGACAAACACAATTCAAGAAATCTCATCCGATTCCCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTTAGACAAACACAATTCAAGAAATCTCATCCGATTCCCCCCA  200

seq1  AAAAATTGTACTATGTCATTTTTAGGTAATGTTAAAAAGAAAAGAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTACTATGTCATTTTTAGGTAATGTTAAAAAGAAAAGAAAAGA  250

seq1  AGAGGAAAGAAAAGAAAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGAAAAGAAAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGA  300

seq1  AAAGAAAAGAAAAGAAAAGGGGAGGGGGGAGGGGAGG  337
      |||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAAAAGAAAAGGGGAGGGGGGAGGGGAGG  337