BAC Information

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BAC

Clone NameB6Ng01-073B02
Chromosome2 (Build37)10 (Build37)
Map Location 142,959,150 - 142,960,312104,054,172 - 104,054,698
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073B02.bB6Ng01-073B02.g
ACCDH890305DH890306
length1,151980
definitionDH890305|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B02, 5' end.DH890306|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,959,150 - 142,960,312)(104,054,172 - 104,054,698)
sequence
gaattcatattcaaagtcaagtccttgttggatagcaaaggttgaggaga
attgcttctcatgatggcaaggatgcttccagaggtcattaccaatccag
taggatctctacaggcctaacaggctttgcatctgtttactgagtgaaac
ctgtcatgctgcttcttagaaagcccctgggatttcaaaatcactttgtg
tcagcacccctcactgtagtaactgaaaagcagtcatggttttgtttttt
gttttttgtttttgtttttgtttttctgctatttcttactatatagctag
aaaagtcatgtgctgtctttagttttaataactttcattaagaatttatt
attggagaaagtttgcaggtttcctaagaaaatagccaaccagccaacca
aacaaacaaacaaatacctgagggaaatttgcctaactggcaggcaagct
gccagaaaactgaagctcagagttcacaaaagagaaattgcttccataaa
ttcaagggtggagcagattgattagttaaacccaggcacaaacttgcaag
agacaaaaaaaaaatataggaccagtgggtcagtcccagaactcatttga
acgagactcagagattgtatcatgctctaggttccagaagtagatccctg
tatttaggagcaagatttgaaattttagaaggttatgcaatgctataatt
ttataactatgtgtgcgagggcacaacagagactctattttaagatttct
ctgctatagtctatattaagatatacatggcaactttcttcccaagggaa
ggaaaagcaagaaggtgaaacagcccctgcagataccttgctaggatatc
ttttgtagtggtgttgctgcaaccccagccaccaaaactcagttagaagc
tgctgacactattaacacgactcagttatgcctccagagaggcctcattc
agcagtggatggaaatggatgcagagacccaccaccgaatatcgggtgga
gctctggtagtcttgtaggagagtcaggtagaggtgaataactagagggt
caagagacttacaaagtcactaattctgggcacatggattcaagaaaatg
aatcactgcaggcctagacctaggcccctacatttttaatcagagtacag
t
gaattccacataaaaccagagacactgaaacttatagagcagaaagtagg
gaaaagcctcgaagatatgggcacagggaaaaattcctgaatagaacagc
aatggcttgtgctgtaagatcgagaatcaacaaatgggacctcataaaat
tgcgaagtttctgtaaggcaaaaaacattgtcaataagacaaaaaaaggc
caccaatagattgggaaaggatctttacctatcctaaatcagatagggga
ctaaaatctaatatatataaagaactcaagaaggtggactccagaaaatc
aaataaccccattaaaaattgggctcagagctaaacaaagaattctcacc
tgaggaataccgaatagctgaaaagcacctgaaaaaaatgttcagcatcc
ttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcac
aacagtcagaatggctaagatccaaaattcaggtgacagtagatgctggc
gagaatgtggagaaagaggaacactcctccattgttggtggaattgcaag
cttgtataaccactctggaaatcagtctggcagttcttcagaaaattgga
catagtactaccagaggatccagcaattcctctcctgggcatatatccag
aagatgttctaaccggtaagaaggacgcatgctcaactatgttcatagca
gccttatttgtaatagctagaagctggaaagaacccagatgcccctcaac
agaggaatggatacagaaaatgtggtacatttacacaatggagtactact
cagctattaacaacaattaatttatgtaattcctaggcaaatcgttggac
ctgtagggcatcatcctgagtgaggtaacccaatcacaaagactcacatg
atatgtactcagtgataagtgtatattagcccagaagcttaggatacaca
gatacagatacaatttgcaaaacacatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142959150_142960312
seq2: B6Ng01-073B02.b_43_1193

seq1  GAATTCATATTCAAAGTCAAGTCCTTGTTGGATAGCAAAGGTTGAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCAAAGTCAAGTCCTTGTTGGATAGCAAAGGTTGAGGAGA  50

seq1  ATTGCTTCTCATGATGGCAAGGATGCTTCCAGAGGTCATTACCAATCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTCATGATGGCAAGGATGCTTCCAGAGGTCATTACCAATCCAG  100

seq1  TAGGATCTCTACAGGCCTAACAGGCTTTGCATCTGTTTACTGAGTGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTCTACAGGCCTAACAGGCTTTGCATCTGTTTACTGAGTGAAAC  150

seq1  CTGTCATGCTGCTTCTTAGAAAGCCCCTGGGATTTCAAAATCACTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGCTGCTTCTTAGAAAGCCCCTGGGATTTCAAAATCACTTTGTG  200

seq1  TCAGCACCCCTCACTGTAGTAACTGAAAAGCAGTCATGGTTTTGTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCCCTCACTGTAGTAACTGAAAAGCAGTCATGGTTTTGTTTTTT  250

seq1  GTTTTTTGTTTTTGTTTTTGTTTTTCTGCTATTTCTTACTATATAGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTGTTTTTGTTTTTCTGCTATTTCTTACTATATAGCTAG  300

seq1  AAAAGTCATGTGCTGTCTTTAGTTTTAATAACTTTCATTAAGAATTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCATGTGCTGTCTTTAGTTTTAATAACTTTCATTAAGAATTTATT  350

seq1  ATTGGAGAAAGTTTGCAGGTTTCCTAAGAAAATAGCCAACCAGCCAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGAAAGTTTGCAGGTTTCCTAAGAAAATAGCCAACCAGCCAACCA  400

seq1  AACAAACAAACAAATACCTGAGGGAAATTTGCCTAACTGGCAGGCAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAATACCTGAGGGAAATTTGCCTAACTGGCAGGCAAGCT  450

seq1  GCCAGAAAACTGAAGCTCAGAGTTCACAAAAGAGAAATTGCTTCCATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAACTGAAGCTCAGAGTTCACAAAAGAGAAATTGCTTCCATAAA  500

seq1  TTCAAGGGTGGAGCAGATTGATTAGTTAAACCCAGGCACAAACTTGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGGTGGAGCAGATTGATTAGTTAAACCCAGGCACAAACTTGCAAG  550

seq1  AGACAAAAAAAAAATATAGGACCAGTGGGTCAGTCCCAGAACTCATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAAAAAAATATAGGACCAGTGGGTCAGTCCCAGAACTCATTTGA  600

seq1  ACGAGACTCAGAGATTGTATCATGCTCTAGGTTCCAGAAGTAGATCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGACTCAGAGATTGTATCATGCTCTAGGTTCCAGAAGTAGATCCCTG  650

seq1  TATTTAGGAGCAAGATTTGAAATTTTAGAAGGTTATGCAATGCTATAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGAGCAAGATTTGAAATTTTAGAAGGTTATGCAATGCTATAATT  700

seq1  TTATAACTATGTGTGCGAGGGCACAACAGAGACTCTATTTTAAGATTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTATGTGTGCGAGGGCACAACAGAGACTCTATTTTAAGATTTCT  750

seq1  CTGCTATAGTCTATATTAAGATATACATGGCAACTTTCTTCCCAAGGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATAGTCTATATTAAGATATACATGGCAACTTTCTTCCCAAGGGAA  800

seq1  GGAAAAGCAAGAAGGTGAAACAGCCCCTGCAGATACCTTGCTAGGATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCAAGAAGGTGAAACAGCCCCTGCAGATACCTTGCTAGGATATC  850

seq1  TTTTGTAGTGGTGTTGCTGCAACCCCAGCCACCAAAACTCAGTTAGAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTGGTGTTGCTGCAACCCCAGCCACCAAAACTCAGTTAGAAGC  900

seq1  TGCTGACACTATTAACACGACTCAGTTATGCCTCCAGAGAGGCCTCATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACACTATTAACACGACTCAGTTATGCCTCCAGAGAGGCCTCATTC  950

seq1  AGCAGTGGATGGAAATGGATGCAGAGACCCACCACCAAATATCGGGTGGA  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCAGTGGATGGAAATGGATGCAGAGACCCACCACCGAATATCGGGTGGA  1000

seq1  GCTCTGGTAGTCTTGTAGAAGAGTCAGGGGTAGAGGTTGAATAAACTAGA  1050
      |||||||||||||||||| |||||||  |||||||| ||||| |||||||
seq2  GCTCTGGTAGTCTTGTAGGAGAGTCA--GGTAGAGG-TGAAT-AACTAGA  1046

seq1  GGGGTCAAGAAGACTTACAAAGTCAACTAA-TCTGGGCACATGGAGTTCA  1099
       |||||||| |||||||||||||| ||||| |||||||||||||| ||||
seq2  -GGGTCAAG-AGACTTACAAAGTC-ACTAATTCTGGGCACATGGA-TTCA  1092

seq1  TAGAAAATGAATCACTGCAGGGGCTAGACCTAGGCCCCCTACATGTTTAT  1149
       |||||||||||||||||| || ||||||||||| ||||||||| |||| 
seq2  -AGAAAATGAATCACTGCA-GGCCTAGACCTAGG-CCCCTACATTTTTA-  1138

seq1  ATCAGATGTACAGT  1163
      |||||| |||||||
seq2  ATCAGA-GTACAGT  1151

seq1: chr10_104054172_104054698
seq2: B6Ng01-073B02.g_69_596 (reverse)

seq1  ATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCAC  50
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  ATGGAGGAGTGTTCCTCTTTCTCCACATTCTCGCCAGCATCTACTGTCAC  50

seq1  CTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGG  100
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  CTGAATTTTGGATCTTAGCCATTCTGACTGTTGTGAGGTGGAATCTCAGG  100

seq1  GTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACA-TTTTT  149
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  GTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGCTGAACATTTTTT  150

seq1  TCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTC  199
      |||||||||| || || |||||||||||||||||||||||||||||||| 
seq2  TCAGGTGCTTTTCAGCTATTCGGTATTCCTCAGGTGAGAATTCTTTGTTT  200

seq1  AGTTCTGAGCCCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCAC  249
      || |||||| |||| |||||||| |||||||||||||||||| |||||||
seq2  AGCTCTGAG-CCCAATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCAC  249

seq1  CTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAG  299
      ||||||||||||||||||||| || ||| |||||||||||||||| ||||
seq2  CTTCTTGAGTTCTTTATATATATTAGATTTTAGTCCCCTATCTGATTTAG  299

seq1  GATAGGTAAAGATCCTTTCTCAATCTGTTGGTGG--TCTTTTTGTCTTAT  347
      ||||||||||||||||||| |||||| |||||||  | ||||||||||||
seq2  GATAGGTAAAGATCCTTTCCCAATCTATTGGTGGCCTTTTTTTGTCTTAT  349

seq1  TGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCAT  397
      ||||  ||| ||||||||| ||||| ||| ||||||||||||||||||||
seq2  TGACAATGTTTTTTGCCTTACAGAAACTTCGCAATTTTATGAGGTCCCAT  399

seq1  TTATCAACTCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA  447
      || |  | |||| |||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA  449

seq1  TTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTA  497
      ||||| |||||| ||||||||||||||||||||||||||||| | |||||
seq2  TTTTT-CCCTGTGCCCATATCTTCGAGGCTTTTCCCTACTTTCTGCTCTA  498

seq1  TAAGTTTCAGTGTCTCTGGTTTTATGTGGA  527
      ||||||||||||||||||||||||||||||
seq2  TAAGTTTCAGTGTCTCTGGTTTTATGTGGA  528