BAC Information

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BAC

Clone NameB6Ng01-073C03
Chromosome2 (Build37)
Map Location 161,536,237 - 161,696,370
singlet/doubletdoublet
Overlap genePtprt
Upstream geneTop1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073C03.bB6Ng01-073C03.g
ACCDH890354DH890355
length1,0761,019
definitionDH890354|Mus musculus domesticus DNA, BAC clone: B6Ng01-073C03, 5' end.DH890355|Mus musculus domesticus DNA, BAC clone: B6Ng01-073C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,695,286 - 161,696,370)(161,536,237 - 161,537,262)
sequence
gaattctctcctcagaaattcataactcactagatattctcatgtggtta
tttttctagataagtggtagagaattctgtgcggttgtaatagaaatccc
agcggatttatatcatacctgcgataaattcatagattaacttagaaaga
attgatactattgccagattgaatttcttgtggccttcataaacctttct
ccatttctgagtaggattttgtggttttattcacatcgtttcttcacgca
gttacgcctatttcttgttaagtgtgggcctatcacaccgtttcttcaca
tggctaagccatgggactagctaggcatttcttgttaagcttgggcctag
ggttgctcttgttttgttttgtttttgtttttctgaattttttttcaatt
tataaaatttcccttgctctaccttttcaaattgatcattatttccattg
catttcttatttatttcgtgaagctattagctttttatattaattttgta
accagccactttggtaaatgcctccatttcttttctagtatgttttacag
atgtttcactatggctgacttgcaaacaataatgatttcttaaaatttct
tttttaacagtgagagtgccttttatatcaatctctagtttaattgcttt
ggcaattatatctggaatagaggacatttcctcttgtcctgagtctaatg
taaaatgcttggattatttcaacattaagcacgagaggaagatttaaata
tgagatagctttttcttttatcatgttaaaatccagtcatttatttccat
tttaccaaaccttttatcagggatggatgctgaatttctttaaaagcttt
tttagaaaggcatctattgatattcatctagcaaatatttggtgatagag
gagacaggaaataaagtctcttccttcgtgaaagtgatggtccttttgct
agcgagaagcaaatttccaaagacacagtccatgtgagaaggtgcttctc
agaggggacgccatctgcaaggaggttgcatgcaaagcctggtgggagct
ggaatctattggacatgagatcaaaa
gaattcagattagctcaactaaggcaagcgagggtaataaaccagcaagg
agcagggcagcgattgttgagattgcagccaaatctaccaggaatgtgtt
tgctttttttctagcctttacatcgtggctttttttttttttttttttct
gaatggaaacactgaatcagttcatatcggactaacatagatccatcacc
ttcctcaaaggttgggtgggactataactcctctcctagtagagatggtg
ggctgaggagagtagagtatgctggtcatgctgacgtatcatgtctctct
catgatcctgttcatatctgactttttctgtgccagccccatgcaaagcc
agggcagacattagtttcagcaggcccaggcccagcacatttggtagaag
gggccaggtagagttcctagtaggctggaaaaccagtgtccactcacaat
agccctcacaaaattggaaaaagacacattagggatgctatctaagacat
cactgtacagaggaagaaggaaagacaggaggacagacacagtgcaatgt
gcctcatgcatgctctaacagtattaacctcttaccaaaccacctgcata
gttgctgggaagggggaaaggttgacaaaacccaagcagattcaagacaa
gctgatgctatgggtgagtgccaagttcagtagagcccttcctcctggct
aaaggcagctggctattgcctgtagcttcagcatgagacagtggcttttt
cagagctccttcatgttagcaagctagaccacagaagggagacatcctca
gcaaaggaaggcaggaggtgagaaaggcaagtgctcatggtgatcagata
aataacataaaggaggaacctggagggatggatgaagacgcagaagcagc
tggctatcttgcagcacaatgaagctttccgcagtggttaatcaggacaa
acttcttctatttgagaccgcttttatctaaggatcacttggcatcatgg
ggaggacacacccgaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_161695286_161696370
seq2: B6Ng01-073C03.b_45_1120 (reverse)

seq1  TTTTGATCTCATTGCTCAATAGATTTCCCAGCTCCCACAAGGCTCTGCAT  50
      ||||||||||| ||  |||||||||  ||||||||||| ||||| |||||
seq2  TTTTGATCTCA-TGTCCAATAGATT--CCAGCTCCCACCAGGCTTTGCAT  47

seq1  GCCAACCTCCTCTGCAGATGGCGTCCCCTCTGAGAAGCACCCTTCTCACA  100
      | ||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  G-CAACCTCCT-TGCAGATGGCGTCCCCTCTGAGAAGCA-CCTTCTCACA  94

seq1  TGGACTGTGTCCTTTGAAAATTTGCTTCTCGCTAGCAAAAGGACCATCAC  150
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  TGGACTGTGT-CTTTGGAAATTTGCTTCTCGCTAGCAAAAGGACCATCAC  143

seq1  TTTTCACGAAGGAAGAGACTTTATTTCCTGTCTCCTCTATTCACCAAATA  200
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  -TTTCACGAAGGAAGAGACTTTATTTCCTGTCTCCTCTA-TCACCAAATA  191

seq1  TTTGCTAGATGAATATCAATAGATGCCTTTCTAAAAAAGCTTTTAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGATGAATATCAATAGATGCCTTTCTAAAAAAGCTTTTAAAGAA  241

seq1  ATTCAGCATCCATCCCTGATAAAAGGTTTGGTAAAATGGAAATAAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCATCCATCCCTGATAAAAGGTTTGGTAAAATGGAAATAAATGAC  291

seq1  TGGATTTTAACATGATAAAAGAAAAAGCTATCTCATATTTAAATCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTAACATGATAAAAGAAAAAGCTATCTCATATTTAAATCTTCCT  341

seq1  CTCGTGCTTAATGTTGAAATAATCCAAGCATTTTACATTAGACTCAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGCTTAATGTTGAAATAATCCAAGCATTTTACATTAGACTCAGGAC  391

seq1  AAGAGGAAATGTCCTCTATTCCAGATATAATTGCCAAAGCAATTAAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAATGTCCTCTATTCCAGATATAATTGCCAAAGCAATTAAACTA  441

seq1  GAGATTGATATAAAAGGCACTCTCACTGTTAAAAAAGAAATTTTAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGATATAAAAGGCACTCTCACTGTTAAAAAAGAAATTTTAAGAAA  491

seq1  TCATTATTGTTTGCAAGTCAGCCATAGTGAAACATCTGTAAAACATACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTGTTTGCAAGTCAGCCATAGTGAAACATCTGTAAAACATACTA  541

seq1  GAAAAGAAATGGAGGCATTTACCAAAGTGGCTGGTTACAAAATTAATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAATGGAGGCATTTACCAAAGTGGCTGGTTACAAAATTAATATA  591

seq1  AAAAGCTAATAGCTTCACGAAATAAATAAGAAATGCAATGGAAATAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTAATAGCTTCACGAAATAAATAAGAAATGCAATGGAAATAATGA  641

seq1  TCAATTTGAAAAGGTAGAGCAAGGGAAATTTTATAAATTGAAAAAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGAAAAGGTAGAGCAAGGGAAATTTTATAAATTGAAAAAAAATT  691

seq1  CAGAAAAACAAAAACAAAACAAAACAAGAGCAACCCTAGGCCCAAGCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAACAAAAACAAAACAAAACAAGAGCAACCCTAGGCCCAAGCTTA  741

seq1  ACAAGAAATGCCTAGCTAGTCCCATGGCTTAGCCATGTGAAGAAACGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAATGCCTAGCTAGTCCCATGGCTTAGCCATGTGAAGAAACGGTG  791

seq1  TGATAGGCCCACACTTAACAAGAAATAGGCGTAACTGCGTGAAGAAACGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCCCACACTTAACAAGAAATAGGCGTAACTGCGTGAAGAAACGA  841

seq1  TGTGAATAAAACCACAAAATCCTACTCAGAAATGGAGAAAGGTTTATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAAAACCACAAAATCCTACTCAGAAATGGAGAAAGGTTTATGAA  891

seq1  GGCCACAAGAAATTCAATCTGGCAATAGTATCAATTCTTTCTAAGTTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAAGAAATTCAATCTGGCAATAGTATCAATTCTTTCTAAGTTAAT  941

seq1  CTATGAATTTATCGCAGGTATGATATAAATCCGCTGGGATTTCTATTACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATTTATCGCAGGTATGATATAAATCCGCTGGGATTTCTATTACA  991

seq1  ACCGCACAGAATTCTCTACCACTTATCTAGAAAAATAACCACATGAGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCACAGAATTCTCTACCACTTATCTAGAAAAATAACCACATGAGAAT  1041

seq1  ATCTAGTGAGTTATGAATTTCTGAGGAGAGAATTC  1085
      |||||||||||||||||||||||||||||||||||
seq2  ATCTAGTGAGTTATGAATTTCTGAGGAGAGAATTC  1076

seq1: chr2_161536237_161537262
seq2: B6Ng01-073C03.g_70_1088

seq1  GAATTCAGATTAGCTCAACTAAGGCAAGCGAGGGTAATAAACCAGCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTAGCTCAACTAAGGCAAGCGAGGGTAATAAACCAGCAAGG  50

seq1  AGCAGGGCAGCGATTGTTGAGATTGCAGCCAAATCTACCAGGAATGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCAGCGATTGTTGAGATTGCAGCCAAATCTACCAGGAATGTGTT  100

seq1  TGCTTTTTTTCTAGCCTTTACATCGTGGCTTTTTTTTTTTTTTTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTTTCTAGCCTTTACATCGTGGCTTTTTTTTTTTTTTTTTTTCT  150

seq1  GAATGGAAACACTGAATCAGTTCATATCGGACTAACATAGATCCATCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAACACTGAATCAGTTCATATCGGACTAACATAGATCCATCACC  200

seq1  TTCCTCAAAGGTTGGGTGGGACTATAACTCCTCTCCTAGTAGAGATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAAGGTTGGGTGGGACTATAACTCCTCTCCTAGTAGAGATGGTG  250

seq1  GGCTGAGGAGAGTAGAGTATGCTGGTCATGCTGACGTATCATGTCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGAGAGTAGAGTATGCTGGTCATGCTGACGTATCATGTCTCTCT  300

seq1  CATGATCCTGTTCATATCTGACTTTTTCTGTGCCAGCCCCATGCAAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCCTGTTCATATCTGACTTTTTCTGTGCCAGCCCCATGCAAAGCC  350

seq1  AGGGCAGACATTAGTTTCAGCAGGCCCAGGCCCAGCACATTTGGTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGACATTAGTTTCAGCAGGCCCAGGCCCAGCACATTTGGTAGAAG  400

seq1  GGGCCAGGTAGAGTTCCTAGTAGGCTGGAAAACCAGTGTCCACTCACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGTAGAGTTCCTAGTAGGCTGGAAAACCAGTGTCCACTCACAAT  450

seq1  AGCCCTCACAAAATTGGAAAAAGACACATTAGGGATGCTATCTAAGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCACAAAATTGGAAAAAGACACATTAGGGATGCTATCTAAGACAT  500

seq1  CACTGTACAGAGGAAGAAGGAAAGACAGGAGGACAGACACAGTGCAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTACAGAGGAAGAAGGAAAGACAGGAGGACAGACACAGTGCAATGT  550

seq1  GCCTCATGCATGCTCTAACAGTATTAACCTCTTACCAAACCACCTGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGCATGCTCTAACAGTATTAACCTCTTACCAAACCACCTGCATA  600

seq1  GTTGCTGGGAAGGGGGAAAGGTTGACAAAACCCAAGCAGATTCAAGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGAAGGGGGAAAGGTTGACAAAACCCAAGCAGATTCAAGACAA  650

seq1  GCTGATGCTATGGGTGAGTGCCAAGTTCAGTAGAGCCCTTCCTCCTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGCTATGGGTGAGTGCCAAGTTCAGTAGAGCCCTTCCTCCTGGCT  700

seq1  AAAGGCAGCTGGCTATTGCCTGTAGCTTCAGCATGAGACAGTAGGCTTTT  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAGGCAGCTGGCTATTGCCTGTAGCTTCAGCATGAGACAGT-GGCTTTT  749

seq1  TCAGAGCTCCTTCATGTTAGCAAGCTAGACCACAGAAGGGAGACATCC-C  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAGAGCTCCTTCATGTTAGCAAGCTAGACCACAGAAGGGAGACATCCTC  799

seq1  AGCAAAGGAAGGCAGGAGGTGAGAAAGGCAAGTGCTCAT-GTGATCAGAT  848
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCAAAGGAAGGCAGGAGGTGAGAAAGGCAAGTGCTCATGGTGATCAGAT  849

seq1  AAATAACATAAAGGAGGAACCTGGAGGGATGGATGAAGACGGCAGAAGCA  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAATAACATAAAGGAGGAACCTGGAGGGATGGATGAAGAC-GCAGAAGCA  898

seq1  GGCTGGCTATCCTGCAGCACAATGGAAGCTTCCGGCAGGTGTTAATCAGG  948
       |||||||||| ||||||||||| ||||||| | ||||  ||||||||||
seq2  -GCTGGCTATCTTGCAGCACAAT-GAAGCTTTCCGCAGTGGTTAATCAGG  946

seq1  ACAAAACTCTTCTATTTGAAGGACCGCTTTTATCTAAAGGATCACTTGGG  998
      |||||  ||||||||||||  |||||||||||||| ||||||||||| ||
seq2  ACAAACTTCTTCTATTTGA--GACCGCTTTTATCT-AAGGATCACTT-GG  992

seq1  CATCAGTGGGGAGGACACACCGGAAGAG  1026
      ||||| ||||||||||||||| ||||||
seq2  CATCA-TGGGGAGGACACACCCGAAGAG  1019